Query lcl|Aclame:protein:vir:100535|NCBI_annot:gp14 head completion protein|genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Match_columns 253 No_of_seqs 34 out of 39 Neff 3.7 Searched_HMMs 1612 Date Mon Dec 2 12:21:59 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_157 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_157_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:100535 Length: 253 100.0 2E-143 1E-146 803.3 19.0 253 1-253 1-253 (253) 2 protein:vir:101154 Length: 252 100.0 9E-140 6E-143 782.8 19.2 252 1-252 1-252 (252) 3 protein:vir:101800 Length: 252 100.0 9E-140 6E-143 782.8 19.2 252 1-252 1-252 (252) 4 protein:vir:80995 Length: 246 100.0 2E-133 1E-136 748.4 18.7 245 1-250 1-246 (246) 5 protein:vir:6590 Length: 246 # 100.0 2E-133 1E-136 747.8 18.5 245 1-250 1-246 (246) 6 protein:vir:6890 Length: 254 # 100.0 1E-132 7E-136 743.8 19.0 251 1-253 3-254 (254) 7 protein:vir:7199 Length: 256 # 100.0 1E-130 6E-134 733.2 19.2 253 1-253 3-256 (256) 8 protein:vir:103452 Length: 256 100.0 1E-130 8E-134 732.7 19.1 253 1-253 3-256 (256) 9 protein:vir:107937 Length: 257 100.0 3E-130 2E-133 730.9 18.3 253 1-253 3-256 (257) 10 protein:vir:98258 Length: 248 100.0 1E-129 8E-133 727.3 18.3 245 1-246 3-248 (248) 11 protein:vir:106285 Length: 262 100.0 3E-129 2E-132 725.5 17.6 246 1-253 3-248 (262) 12 protein:vir:5658 Length: 278 # 100.0 3E-124 2E-127 698.1 17.4 253 1-253 3-271 (278) 13 protein:vir:104476 Length: 308 100.0 2E-110 1E-113 621.8 15.6 233 18-253 1-254 (308) 14 protein:vir:106986 Length: 292 100.0 2E-105 1E-108 594.9 16.1 228 23-253 1-243 (292) 15 protein:vir:103005 Length: 390 100.0 7.7E-97 5E-100 547.5 15.6 244 8-253 1-261 (390) 16 protein:vir:104739 Length: 470 100.0 2.4E-84 1.5E-87 479.0 14.5 218 23-253 1-257 (470) 17 protein:vir:97237 Length: 122 28.4 1.8 0.0011 19.2 10.3 121 25-171 1-122 (122) 18 protein:vir:1385 Length: 107 # 21.4 2.6 0.0016 18.3 8.9 106 51-173 1-107 (107) No 1 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=1.7e-143 Score=803.28 Aligned_cols=253 Identities=100% Similarity=1.536 Sum_probs=252.7 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) |||+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCccccccccccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIEDQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNPV 240 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~~ 240 (253) |||||+|+|+||+||+|+|+||+++||+|+++++.|||+||++++|++|+++.+++|++++++||++||++|+||+|||+ T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~~ 240 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIEDQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNPV 240 (253) T ss_pred CceEEEEEEEEEecCCccccccCcccccccchhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCccccccCC Q lcl|Aclame:pro 241 NSFNSPFGRHEGQ 253 (253) Q Consensus 241 ~~~~sp~~~~~~~ 253 (253) +|++|||+||||| T Consensus 241 ~g~~spf~~~~~~ 253 (253) T protein:vir:10 241 NSFNSPFGRHEGQ 253 (253) T ss_pred ccccCcccccCCC Confidence 9999999999999 No 2 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=9.4e-140 Score=782.78 Aligned_cols=252 Identities=82% Similarity=1.347 Sum_probs=251.5 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) |||+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCccccccccccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIEDQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNPV 240 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~~ 240 (253) |||||+|+|+||+||+|+|+|++++||+|+++++.|||++|+++||++|++++||+|++++++||++||+||+||+|++. T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~~ 240 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIEDMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNSF 240 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccchhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCccccccC Q lcl|Aclame:pro 241 NSFNSPFGRHEG 252 (253) Q Consensus 241 ~~~~sp~~~~~~ 252 (253) .+++|||++||| T Consensus 241 ~~~~~pf~~~~~ 252 (252) T protein:vir:10 241 GNFDSPFGKHEA 252 (252) T ss_pred CCcCCcccccCC Confidence 999999999999 No 3 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=9.4e-140 Score=782.78 Aligned_cols=252 Identities=82% Similarity=1.347 Sum_probs=251.5 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) |||+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCccccccccccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIEDQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNPV 240 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~~ 240 (253) |||||+|+|+||+||+|+|+|++++||+|+++++.|||++|+++||++|++++||+|++++++||++||+||+||+|++. T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~~ 240 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIEDMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNSF 240 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccchhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCccccccC Q lcl|Aclame:pro 241 NSFNSPFGRHEG 252 (253) Q Consensus 241 ~~~~sp~~~~~~ 252 (253) .+++|||++||| T Consensus 241 ~~~~~pf~~~~~ 252 (252) T protein:vir:10 241 GNFDSPFGKHEA 252 (252) T ss_pred CCcCCcccccCC Confidence 999999999999 No 4 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=1.8e-133 Score=748.39 Aligned_cols=245 Identities=54% Similarity=0.998 Sum_probs=242.2 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) |||+|||||||+++||++|++++|+|||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |||||+|+|+||+||+|+|+||+++||+|+ ++++.|||++|+++||++|+++++++|+++++.||++||+||+|| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~---- 236 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPI---- 236 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceee---- Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999 Q ss_pred CCcccCccccc Q lcl|Aclame:pro 240 VNSFNSPFGRH 250 (253) Q Consensus 240 ~~~~~sp~~~~ 250 (253) +|++|||+-. T Consensus 237 -~~~gspf~~~ 246 (246) T protein:vir:80 237 -NGKGSPFADF 246 (246) T ss_pred -cCCCCccccC Confidence 5555999988 No 5 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=2.2e-133 Score=747.81 Aligned_cols=245 Identities=53% Similarity=1.010 Sum_probs=242.3 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) |||+|||||||+++||++|++++|||||||+||+.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |||||+|+|+||+||+|+|+||+++||+|+ ++++.|||++|+++||++|+++++++|+++++.||++||+||+|| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~---- 236 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPI---- 236 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceee---- Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999 Q ss_pred CCcccCccccc Q lcl|Aclame:pro 240 VNSFNSPFGRH 250 (253) Q Consensus 240 ~~~~~sp~~~~ 250 (253) +|++|||+-. T Consensus 237 -~~~gspf~~~ 246 (246) T protein:vir:65 237 -NGKGSPFADF 246 (246) T ss_pred -cCCCCccccC Confidence 5555999988 No 6 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=1.2e-132 Score=743.82 Aligned_cols=251 Identities=60% Similarity=1.002 Sum_probs=244.3 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) -+|+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (254) T protein:vir:68 3 TYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKFTK 82 (254) T ss_pred ccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (254) T protein:vir:68 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQVG 162 (254) T ss_pred ceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |||||+|+|+||+||+|+|+||+++||+|+ .++++|||+||.+|+|++|++++|++|++++++||++||+||+||+|++ T Consensus 163 Kn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~~g 242 (254) T protein:vir:68 163 KNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNNRG 242 (254) T ss_pred CceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecCCC Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999997665 Q ss_pred CCcccCccccccCC Q lcl|Aclame:pro 240 VNSFNSPFGRHEGQ 253 (253) Q Consensus 240 ~~~~~sp~~~~~~~ 253 (253) +.+|||.-.--. T Consensus 243 --~~~~pf~~~~~~ 254 (254) T protein:vir:68 243 --RQNSPFDDGFMN 254 (254) T ss_pred --CCCCcccccccC Confidence 479999754333 No 7 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=1e-130 Score=733.19 Aligned_cols=253 Identities=58% Similarity=0.974 Sum_probs=248.0 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) -+|+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF~k 82 (256) T protein:vir:71 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) T ss_pred ccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (256) T protein:vir:71 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) T ss_pred ceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |||||+|+|+||+||+|+|+||++++|+|+ ++++.|||++|++++|++|+++.++++++++++||++||+|++||+|++ T Consensus 163 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~~G 242 (256) T protein:vir:71 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) T ss_pred CCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecCCC Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999 Q ss_pred CCcccCccccccCC Q lcl|Aclame:pro 240 VNSFNSPFGRHEGQ 253 (253) Q Consensus 240 ~~~~~sp~~~~~~~ 253 (253) .+..++||...--. T Consensus 243 ~~~~~~pfd~~~~~ 256 (256) T protein:vir:71 243 KSFESSPFDNDFMD 256 (256) T ss_pred CCCcCCCccccccC Confidence 98899999764433 No 8 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=1.3e-130 Score=732.70 Aligned_cols=253 Identities=58% Similarity=0.978 Sum_probs=248.0 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) -+|+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (256) T protein:vir:10 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) T ss_pred ccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (256) T protein:vir:10 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) T ss_pred ceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |||||+|+|+||+||+|+|+||+++||+|+ ++++.||++||++++|++|+++.++++++++++|+++||+|++||+|++ T Consensus 163 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~~G 242 (256) T protein:vir:10 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) T ss_pred CCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecCCC Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999 Q ss_pred CCcccCccccccCC Q lcl|Aclame:pro 240 VNSFNSPFGRHEGQ 253 (253) Q Consensus 240 ~~~~~sp~~~~~~~ 253 (253) .+..++||...--. T Consensus 243 ~~~~~~pfd~~~~~ 256 (256) T protein:vir:10 243 KSFESSPFDNDFMD 256 (256) T ss_pred CCCcCCCccccccC Confidence 98899999764433 No 9 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=2.8e-130 Score=730.87 Aligned_cols=253 Identities=53% Similarity=0.893 Sum_probs=248.0 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) -+|+|||||||+++||++||+++|||||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (257) T protein:vir:10 3 TFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKFTK 82 (257) T ss_pred ccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (257) T protein:vir:10 83 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 162 (257) T ss_pred ceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |+|||+|+|+||+||+|+|.|++++++++. ++++.||+++|++++|++|+++.+++|++++++||++||+||+||+|++ T Consensus 163 kn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~~g 242 (257) T protein:vir:10 163 TNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 242 (257) T ss_pred CceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCCCC Confidence 999999999999999999999999999998 8899999999999999999999999999999999999999999999999 Q ss_pred CCcccCccccccCC Q lcl|Aclame:pro 240 VNSFNSPFGRHEGQ 253 (253) Q Consensus 240 ~~~~~sp~~~~~~~ 253 (253) .++++|||.-.--. T Consensus 243 ~~~~~~pf~~~~~~ 256 (257) T protein:vir:10 243 EDAPPTAFDDAFLD 256 (257) T ss_pred CCCCCCcccchhcc Confidence 99999999764333 No 10 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=1.2e-129 Score=727.35 Aligned_cols=245 Identities=47% Similarity=0.855 Sum_probs=241.1 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) -+|+|||||||+++||++||++++||||||+|+|++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (248) T protein:vir:98 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) T ss_pred ccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||| +||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) T protein:vir:98 83 SWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-CchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 6999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~ 239 (253) |||||+|+|+||+||+|+|+||++++|+|+ ..++.+||+||.+++|++|+++.+++|++++++||++||++|+||+|++ T Consensus 162 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~~g 241 (248) T protein:vir:98 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) T ss_pred CCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecCcC Confidence 999999999999999999999999999999 6788999999999999999999999999999999999999999998888 Q ss_pred CCcccCc Q lcl|Aclame:pro 240 VNSFNSP 246 (253) Q Consensus 240 ~~~~~sp 246 (253) .+.+++| T Consensus 242 ~~~~~~~ 248 (248) T protein:vir:98 242 SPFATLP 248 (248) T ss_pred CCccCCC Confidence 8888888 No 11 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=2.7e-129 Score=725.45 Aligned_cols=246 Identities=46% Similarity=0.796 Sum_probs=239.8 Q ss_pred CCCccceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) Q Consensus 1 m~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~ 80 (253) -+|+|||||||+++||++|++++|+|||||+++|++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF~k 82 (262) T protein:vir:10 3 ARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKFKK 82 (262) T ss_pred ccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 81 a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ~G 162 (262) T protein:vir:10 83 TYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVKRE 162 (262) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCccccccccccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCCC Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIEDQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNPV 240 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~~ 240 (253) |||||+|+|+||+||+|+|+|++++||+|+.+.. +|++|+++||+.|+++.|++|+++++.|+++||++|++|+ T Consensus 163 kn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e~~--~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~---- 236 (262) T protein:vir:10 163 QLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGEDD--PLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNII---- 236 (262) T ss_pred CceEEEEEEEEEeeCCccccccCccccccccccc--cccccccccceeecccccccchhHHhhhhhhhcchhcccC---- Confidence 9999999999999999999999999999987643 6999999999999999999999999999999999999995 Q ss_pred CcccCccccccCC Q lcl|Aclame:pro 241 NSFNSPFGRHEGQ 253 (253) Q Consensus 241 ~~~~sp~~~~~~~ 253 (253) |.+|||++|+-. T Consensus 237 -~~gsp~~~~~~~ 248 (262) T protein:vir:10 237 -GNGTPIAEHKPT 248 (262) T ss_pred -CCCCcccccCCC Confidence 557999998876 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=2.6e-124 Score=698.12 Aligned_cols=253 Identities=38% Similarity=0.679 Sum_probs=238.0 Q ss_pred CCCc---cceeeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeecccccccccccccc Q lcl|Aclame:pro 1 MMDK---SLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSR 77 (253) Q Consensus 1 m~~~---~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~Sk 77 (253) -||+ |||||||+++||++|++++|||||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|| T Consensus 3 ~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~sk 82 (278) T protein:vir:56 3 AYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPMSK 82 (278) T ss_pred cccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccccc Confidence 7999 7999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchh Q lcl|Aclame:pro 78 FEKAWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFY 157 (253) Q Consensus 78 F~~a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFY 157 (253) |++||+|||||+||+||+|++|||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||| T Consensus 83 F~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFY 162 (278) T protein:vir:56 83 FTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDPWY 162 (278) T ss_pred cccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCchh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCCceEEEEEEEEEecCCcccCCC-----ccccccccc----cccccchhhhhccCCeeccccccccchhhhhhccccc Q lcl|Aclame:pro 158 QMGKNPIRVIVAQKFIYSGEKLAPQ-----FQEKPEIED----QYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPF 228 (253) Q Consensus 158 Q~Gk~yv~~l~ce~F~Ys~E~idtg-----i~~iD~Ie~----~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~ 228 (253) |+||+|||+|+|+||+||+|+|+|| +++++.|.+ ....||+++|.+++|.+|+.+.++++++++++|++.| T Consensus 163 Q~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~~f 242 (278) T protein:vir:56 163 MNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVDKF 242 (278) T ss_pred hhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhcccee Confidence 9999999999999999999999988 666776622 2234899999999999999999999999999999999 Q ss_pred ceeeecccCCCCC----cccCccccccCC Q lcl|Aclame:pro 229 VEPFDPISTNPVN----SFNSPFGRHEGQ 253 (253) Q Consensus 229 v~~~~~v~~~~~~----~~~sp~~~~~~~ 253 (253) +++++|+.++... .++||.+.|-+- T Consensus 243 ~~~~~v~~~~~~~~~t~~~n~~~g~~v~~ 271 (278) T protein:vir:56 243 YESEQVVPSGSDVQPTDPRNATIGFNVNN 271 (278) T ss_pred eecCceecCCCCccccCcccccCCCcCcc Confidence 9999999877444 456666666655 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=2.2e-110 Score=621.79 Aligned_cols=233 Identities=30% Similarity=0.476 Sum_probs=214.1 Q ss_pred hhhhcccccce----------eeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeecccccccccccccccccceeeeee Q lcl|Aclame:pro 18 QTNEQNILNPY----------VKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEKAWKFAAW 87 (253) Q Consensus 18 ~~~~~~~~NpY----------fn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~a~~ieaY 87 (253) -+++++.+||| ||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~py~~~~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF~~a~~ieaY 80 (308) T protein:vir:10 1 MAIQNSPAQDYVQSDYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKFESAKAIRAY 80 (308) T ss_pred CccccCCCCCcccccccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhcccccccccccccccccceeEEEE Confidence 56666666666 58999999999999999999999999999999999999999999999999999999999 Q ss_pred ehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCC-------CCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 88 LNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGK-------EPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 88 l~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~-------rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) |+||+||+|+||||||||||++|||||+|||+||++++++. ||+|||||||||+|+|||||||||++||||+| T Consensus 81 ~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE~~~PFyQ~G 160 (308) T protein:vir:10 81 VNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVEVERPFYQLG 160 (308) T ss_pred eechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999984 99999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhccccc---ceeeeccc Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPF---VEPFDPIS 236 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~---v~~~~~v~ 236 (253) |||||+|+|+||+||+|+|+|||++||+|+ ..++.|+|++|++++|..|+++.++++.++++.|++.| +++..|+ T Consensus 161 k~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds~v~~ItV~- 239 (308) T protein:vir:10 161 RNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDASTRTLIVI- 239 (308) T ss_pred CceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecCCceEEEEE- Confidence 999999999999999999999999999999 67789999999999999999999999999999999999 5555555 Q ss_pred CCCCCcccCccccccCC Q lcl|Aclame:pro 237 TNPVNSFNSPFGRHEGQ 253 (253) Q Consensus 237 ~~~~~~~~sp~~~~~~~ 253 (253) |++.+++||=.-. |+ T Consensus 240 -N~gGsftspptIt-Gs 254 (308) T protein:vir:10 240 -NRSGTFTVPETVT-GG 254 (308) T ss_pred -eCCCceeeCcEEE-ec Confidence 4445666653221 21 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=1.8e-105 Score=594.87 Aligned_cols=228 Identities=26% Similarity=0.469 Sum_probs=204.3 Q ss_pred ccccceee--ccccchhHHHHHHHHHHHHHhcCeeEEEeeeeecccccccccccccccccceeeeeeehhhhccCCccch Q lcl|Aclame:pro 23 NILNPYVK--FNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEKAWKFAAWLNSFESYEGQQSF 100 (253) Q Consensus 23 ~~~NpYfn--~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~a~~ieaYl~n~eGf~g~gd~ 100 (253) --|||||| +|||.+||+|+|+||+|||||||+|||||||++|+ |++|+|+++|||++||+|||||+||+||+|+||| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 45999999 69999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceeeeeEEEEEcchhhhhhhcC------CCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEec Q lcl|Aclame:pro 101 FSKFGHQQNDEVRISINPGLFKYQVNG------KEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMGKNPIRVIVAQKFIY 174 (253) Q Consensus 101 ~SKFG~~~~DE~Tf~IS~~rF~~~v~~------~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~Gk~yv~~l~ce~F~Y 174 (253) |||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+||||++||||+||+|||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 79999999999999999999999999999999999999999999999 Q ss_pred CCcccCCCcccccccc-ccccccchhhhhccCCeeccccccccchhhhhhcccccceeee---cccCCCCCcccC---cc Q lcl|Aclame:pro 175 SGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFD---PISTNPVNSFNS---PF 247 (253) Q Consensus 175 s~E~idtgi~~iD~Ie-~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~---~v~~~~~~~~~s---p~ 247 (253) |+|+|+||+++||+|+ ...+.|+++++++++|..|+++..+++...++.+++.|...++ |+.++ .++++ +- T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~--GsF~T~e~i~ 237 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRT--GTFEEGESVT 237 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCc--cccccCceee Confidence 9999999999999999 4556777888888888888888889999999999999966555 44332 11211 11 Q ss_pred ccccCC Q lcl|Aclame:pro 248 GRHEGQ 253 (253) Q Consensus 248 ~~~~~~ 253 (253) +...|. T Consensus 238 G~~Sga 243 (292) T protein:vir:10 238 GNDSGS 243 (292) T ss_pred EeecCC Confidence 212222 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=7.7e-97 Score=547.51 Aligned_cols=244 Identities=29% Similarity=0.393 Sum_probs=194.5 Q ss_pred eeecCCcchhhhhhcccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeecccccccccccccccccceeeeee Q lcl|Aclame:pro 8 ATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEKAWKFAAW 87 (253) Q Consensus 8 a~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~a~~ieaY 87 (253) -..-+.+||+++++.+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||++||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCC-------CCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 88 LNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGK-------EPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) Q Consensus 88 l~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~-------rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~G 160 (253) |+|||||+|++|||||||||++|||||+|||+||++++++. ||+|||||||||+++||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 99999999999999999999999999999999999999984 99999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCcccCCCcccccccccc-ccccchhhhhccCCeeccccccccchhhhhhcccccc---eeeeccc Q lcl|Aclame:pro 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIEDQ-YNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFV---EPFDPIS 236 (253) Q Consensus 161 k~yv~~l~ce~F~Ys~E~idtgi~~iD~Ie~~-~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v---~~~~~v~ 236 (253) |+|+|+|+|++|+||+|.+++++++++.|... ...+++..+.. |.........--.......+..-+ ....+.. T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~--g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtI 238 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAG--GTGAFTVGEEIVGDLYLATATATISGDAVDAVTV 238 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccC--CcccccccceeeecCcceeEEEEecCCeEEEEEE Confidence 99999999999999999999999999998743 23333322222 111111111100011111111111 1223334 Q ss_pred CCCCCcccC---c---cccccCC Q lcl|Aclame:pro 237 TNPVNSFNS---P---FGRHEGQ 253 (253) Q Consensus 237 ~~~~~~~~s---p---~~~~~~~ 253 (253) .|++.|-++ | ++..-|. T Consensus 239 tn~GsGYt~~~~ptVtisgg~gt 261 (390) T protein:vir:10 239 TDGGEHYKSALPPTVTITGGGGS 261 (390) T ss_pred eeCCCCcccCceeEEEecCCCCc Confidence 455555443 1 1111111 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=2.4e-84 Score=478.99 Aligned_cols=218 Identities=26% Similarity=0.451 Sum_probs=171.8 Q ss_pred ccccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeecccccccccccccccccceeeeeeehhhhccCCccchhh Q lcl|Aclame:pro 23 NILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEKAWKFAAWLNSFESYEGQQSFFS 102 (253) Q Consensus 23 ~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E~~~SkF~~a~~ieaYl~n~eGf~g~gd~~S 102 (253) -.+||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||++||+|||||+||+||+|++|||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 67999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceeeeeEEEEEcchhhh------------------hhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceE Q lcl|Aclame:pro 103 KFGHQQNDEVRISINPGLFK------------------YQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMGKNPI 164 (253) Q Consensus 103 KFG~~~~DE~Tf~IS~~rF~------------------~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~Gk~yv 164 (253) |||++++|||||+|||+||+ +|+...||+|||||||||+|+||||+|||+++||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999996 455568999999999999999999999999999999999999 Q ss_pred EEEEEEEEecCCcccCCCccccccccccccccchhhhhccCCeeccccccccchhhhhhcccccceeeecccCCCCCccc Q lcl|Aclame:pro 165 RVIVAQKFIYSGEKLAPQFQEKPEIEDQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNPVNSFN 244 (253) Q Consensus 165 ~~l~ce~F~Ys~E~idtgi~~iD~Ie~~~~~l~l~~i~~l~G~~d~~~~e~~e~~~~~~e~~~~v~~~~~v~~~~~~~~~ 244 (253) |+|+|++|+|++|.+++.+..++.+...... ...+.....|..-...... +..-+. .+...+++.+.+ T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~-~~t~t~~~~g~~~~~t~~~---------~~g~vt--~ititn~Gsgyt 227 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGY-ISKLQLVGIGRTAEVAASI---------GVGYVR--EIFLNNDGSGFT 227 (470) T ss_pred EEeeeceeEecCCccccceeccccccccccc-ceeeeecCCCccceeeeee---------cceeee--EeEeecccccee Confidence 9999999999999999999999987754322 2222111111111110000 001111 122223333322 Q ss_pred Ccc-cc--------------------ccCC Q lcl|Aclame:pro 245 SPF-GR--------------------HEGQ 253 (253) Q Consensus 245 sp~-~~--------------------~~~~ 253 (253) .|= -. ..+. T Consensus 228 ~~ptVti~~~~~~~~~~a~~~~~t~~~~g~ 257 (470) T protein:vir:10 228 SPPTITFSASPAFTDARAVGILTTRANVTS 257 (470) T ss_pred ccCEEEEccCCCCCCccceeeEeecceeeE Confidence 210 00 0000 No 17 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=28.38 E-value=1.8 Score=19.25 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=77.7 Q ss_pred ccceeeccccchhHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccc-ccccccccceeeeeeehhhhccCCccchhhh Q lcl|Aclame:pro 25 LNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGE-DPNSRFEKAWKFAAWLNSFESYEGQQSFFSK 103 (253) Q Consensus 25 ~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlpRe~v~~D~v~~E-~~~SkF~~a~~ieaYl~n~eGf~g~gd~~SK 103 (253) .+.|. .-++... +.|+-+|..|.+.+.+-..-|+-.++ ++-+.-...|.+.+.+.+|.--.=+|.+ T Consensus 1 M~~y~------~~~~~a~----~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARFD------SAIALAK----KLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccch------HHHHHHH----HHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 23443 2344444 45555999999888877666766665 2334446789999999988754333332 Q ss_pred cCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEE Q lcl|Aclame:pro 104 FGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMGKNPIRVIVAQK 171 (253) Q Consensus 104 FG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~Gk~yv~~l~ce~ 171 (253) ++..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| .|--..|+|..-+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 455565544332211 347889999966 677899999987666 4555567777777 No 18 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=21.42 E-value=2.6 Score=18.30 Aligned_cols=106 Identities=8% Similarity=0.032 Sum_probs=73.7 Q ss_pred hcCe-eEEEeeeeecccccccccccccccccceeeeeeehhhhccCCccchhhhcCceeeeeEEEEEcchhhhhhhcCCC Q lcl|Aclame:pro 51 MRGL-EFYYLEREYTNLDLLFGEDPNSRFEKAWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKE 129 (253) Q Consensus 51 m~G~-dvyYlpRe~v~~D~v~~E~~~SkF~~a~~ieaYl~n~eGf~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~r 129 (253) |.+- -|....++-+ .|. .|... ..+...+++-|.+....| +++++-=+++..-.++|+|. |..-++..+ T Consensus 1 ~~~~hRI~i~~~~~~-~D~-~G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~iR---y~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLEEK-NIK-GRRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKIR---YCKKVEELR 70 (107) T ss_pred CCcceEEEEEeeeee-eCC-CCCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEEE---ecCCccccc Confidence 7664 4566555554 474 45443 469999999999999755 56777767788888888873 333444555 Q ss_pred CccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEe Q lcl|Aclame:pro 130 PKLGDLIYMPMDNSLFEITWVEPYTPFYQMGKNPIRVIVAQKFI 173 (253) Q Consensus 130 P~EGDLIYfP~~n~lFEI~~VE~e~PFYQ~Gk~yv~~l~ce~F~ 173 (253) +..++-|-+ .++.|+|..|.+.+ .++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 666777765 78999999997432 24557899998766 Done!