Query lcl|Aclame:protein:vir:98858|NCBI_annot:hypothetical protein|genbank:acc:YP_654734;genbank:gi:109302919;genbank:GeneID:4156063 Match_columns 150 No_of_seqs 102 out of 208 Neff 5.7 Searched_HMMs 1612 Date Sun Dec 1 20:39:58 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_28 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_28_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3785 Length: 150 # 100.0 5.1E-71 3.2E-74 406.0 17.7 150 1-150 1-150 (150) 2 protein:vir:3748 Length: 150 # 100.0 6.7E-71 4.1E-74 405.3 17.8 150 1-150 1-150 (150) 3 protein:vir:98858 Length: 150 100.0 6.9E-71 4.3E-74 405.2 17.4 150 1-150 1-150 (150) 4 protein:vir:78780 Length: 153 100.0 1.3E-69 8.1E-73 398.2 17.3 150 1-150 1-153 (153) 5 protein:vir:272 Length: 153 # 100.0 3E-69 1.8E-72 396.3 17.6 150 1-150 1-153 (153) 6 protein:vir:1831 Length: 168 # 100.0 5.1E-67 3.2E-70 384.0 17.5 150 1-150 17-168 (168) 7 protein:vir:1155 Length: 153 # 100.0 1E-66 6.3E-70 382.4 17.7 150 1-150 2-153 (153) 8 protein:vir:100333 Length: 171 100.0 1.4E-66 8.5E-70 381.7 17.0 150 1-150 17-171 (171) 9 protein:vir:5696 Length: 169 # 100.0 3.8E-66 2.3E-69 379.3 17.6 150 1-150 17-169 (169) 10 protein:vir:2018 Length: 169 # 100.0 5E-66 3.1E-69 378.6 17.7 150 1-150 12-169 (169) 11 protein:vir:79124 Length: 159 100.0 8.6E-66 5.4E-69 377.3 17.4 150 1-150 3-159 (159) 12 protein:vir:6063 Length: 169 # 100.0 2E-65 1.2E-68 375.3 17.7 150 1-150 12-169 (169) 13 protein:vir:98558 Length: 168 100.0 2.4E-65 1.5E-68 374.8 17.6 150 1-150 16-168 (168) 14 protein:vir:79188 Length: 159 100.0 3E-65 1.8E-68 374.3 17.8 150 1-150 3-159 (159) No 1 >protein:vir:3785 Length: 150 # NCBI annotation: packaging protein # Family: family:all:204 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536825;genbank:gi:17981834;genbank:GeneID:929213 Probab=100.00 E-value=5.1e-71 Score=405.96 Aligned_cols=150 Identities=68% Similarity=0.988 Sum_probs=149.1 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~~ 80 (150) ||||+|.++++.+|+||||||||++++||+.||||++||++||++||+.||++||.+|+.|++.|+++||++|++||+++ T Consensus 1 mF~g~~~~~~~~~I~ndgFwPdI~l~~fr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~~~G~~sl~~vp~~~ 80 (150) T protein:vir:37 1 MFNGRTQDYDDTVITNNGFWSDIYVEEFQKQRAIPLQIPVEMVKTALIAAMQGVNLDLAEVEENHRKSAVNSVQEISTQR 80 (150) T ss_pred CCCCCCCCcccceecCCCcCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 81 VNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNRDYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) |||+|+++++|+|||||+|||+|+|+|+++|+|++|+++++++++++|||+|+||||+|+|++|+||||| T Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~~~~~~~~~l~rda~~AIr~i~G~~r~tveLI 150 (150) T protein:vir:37 81 INGENYAETLYKKAVFARAKAELLPEFNTLSGREIHQNRDYVVEQKSLLAEATHAIRTLKGKKRGSVWLL 150 (150) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhHhhcCccccchhccccchhhHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:3748 Length: 150 # NCBI annotation: orf15 # Family: family:all:204 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043489;genbank:gi:9628624;genbank:GeneID:1261139 Probab=100.00 E-value=6.7e-71 Score=405.31 Aligned_cols=150 Identities=67% Similarity=1.003 Sum_probs=149.3 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~~ 80 (150) ||||||.++++.+|+||||||||++++||+.||||++||++||++||+.||++||.+|+.||+.|+++||++|++||+++ T Consensus 1 mF~G~~~~~~~~~I~n~gFwPdi~l~~fr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~~~G~~~l~~vp~~~ 80 (150) T protein:vir:37 1 MFNGRTQDYDDTVITNNGFWSDIYVEEFQKQRAIPLQIPVEMVKAALVAAIQGVDLDLADVAESYRKSAVNSVTEISSPL 80 (150) T ss_pred CCCCCCCCcccccccCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 81 VNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNRDYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) |||+|+++++|+|||||+|||+|+|+|+++|+|++|+++++++++++|||+++||||+|+|++|+||||| T Consensus 81 i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~~~~~~~~~l~rda~~AIr~i~G~~r~tveLI 150 (150) T protein:vir:37 81 INDENYAETLYKKAVFARAKAELLPEFNTLSGREIHQNRDYVTEQKSLLAEATHAIRTLKGKKRGSVWLL 150 (150) T ss_pred cCCchHHHHHHHHHHHHHHHHHHhHhhcCcccchhhhhhcchHHHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:98858 Length: 150 # NCBI annotation: hypothetical protein # Family: family:all:204 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654734;genbank:gi:109302919;genbank:GeneID:4156063 Probab=100.00 E-value=6.9e-71 Score=405.23 Aligned_cols=150 Identities=100% Similarity=1.329 Sum_probs=149.3 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~~ 80 (150) ||||+|.++++.+|+||||||||++++||+.||||++||++||++||+.||++||.+|+.|+++|+++||++|++||+++ T Consensus 1 mFsG~~~~~~~~~I~n~gFwPdi~l~~fr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~~l~~vp~~~ 80 (150) T protein:vir:98 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) T ss_pred CCCCCCCCcccceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 81 VNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNRDYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) |||+|+++++|+|||||+|||+|+|+|+++|+|++|+++++++++++|||+++||||+|+|++|+||||| T Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~~~~~~~~~l~rda~~AIr~i~G~~r~tveLI 150 (150) T protein:vir:98 81 VNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNRDYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhHhhcCCCcchhhhhccChHHHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:78780 Length: 153 # NCBI annotation: putative head completion protein # Family: family:all:204 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285649;genbank:gi:148727155;genbank:GeneID:5220129 Probab=100.00 E-value=1.3e-69 Score=398.22 Aligned_cols=150 Identities=33% Similarity=0.624 Sum_probs=147.6 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~~ 80 (150) ||+|||.++++.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|++.|+++||++|++||+++ T Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~l~~fr~~~ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~~~G~~~la~vp~~~ 80 (153) T protein:vir:78 1 MFAGKDIDYSAATIRNDGFWPDVAVADFERRRALPADLDQQTTGAALLAAVSEINLQLASHQAALQAKGYASAAAVPGPS 80 (153) T ss_pred CCCCCCCCccceeecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred c-CCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 81 V-NNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 81 i-~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) | ||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 81 i~~g~s~~v~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~ae~~~~~~~~l~rda~~AIr~i~G~~r~tveLI 153 (153) T protein:vir:78 81 LEDGTNALTEQYLAAVFARAKAALLPEFASVTERATANNQVERSPDQRNQLLAESQQLVRSIKGKRRAGVSQI 153 (153) T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhHhhcCCCcchHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 9 89999999999999999999999999999999999987 4678999999999999999999999999999 No 5 >protein:vir:272 Length: 153 # NCBI annotation: putative head completion protein # Family: family:all:204 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536652;genbank:gi:17975130;genbank:GeneID:929086 Probab=100.00 E-value=3e-69 Score=396.29 Aligned_cols=150 Identities=36% Similarity=0.614 Sum_probs=147.2 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccc-c Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAK-S 79 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~-~ 79 (150) ||+|+++++++.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|++.|+++||++|++||+ + T Consensus 1 mF~g~~~~~~~~~I~n~gFwPdi~l~~fr~~~ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~~~G~~~ladvpa~~ 80 (153) T protein:vir:27 1 MFTASNTSFQDTTIENDGFWPNINAGDFERLRGTPAAQDDERIAHAVVNAIASVNLQLSDLKAKYIAAGHASAADVPAFP 80 (153) T ss_pred CCCCCCCCcccccccCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcCCcc Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 7 Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 80 TVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 80 ~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) +|||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 81 ~inges~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~ae~~~~~~~~l~rda~~AIr~i~G~~r~tveLI 153 (153) T protein:vir:27 81 KVNDKNLIVIQYQSAVFARAKADLLPDFATVSQKKEGDHLAERSQETKNELLAESERIIRNMLGKNRASVELI 153 (153) T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhHhhcCCCCchHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCCceeeeC Confidence 9999999999999999999999999999999999999887 4678999999999999999999999999999 No 6 >protein:vir:1831 Length: 168 # NCBI annotation: Q protein # Family: family:all:204 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052255;genbank:gi:9634062;genbank:GeneID:1262460 Probab=100.00 E-value=5.1e-67 Score=384.01 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=146.5 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~~ 80 (150) =|+|+++++++.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.||++|+++||++|++||+++ T Consensus 17 ~f~~~~~~~~~~~I~ndgFwPdI~l~efr~~~ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~~La~vp~~~ 96 (168) T protein:vir:18 17 GVVIPAPETGGAVIKNTFFFPDVDPKRVRELMRLEQTVSDARLRNAIKTGMAETNAELYDYRLRQTAAGFKQLADVPAEE 96 (168) T ss_pred cCCCCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcchhh Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 81 VNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) |||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 97 i~ges~~v~~Y~rAVy~~AkA~Lle~y~~~dtt~~g~~~ae~l~~~~d~l~rda~~AIr~i~G~~R~tVeLI 168 (168) T protein:vir:18 97 IDGENVRVFHYLSAVTAMATATLYERYRGVEATGKGDKKADSVETTIDDLWRDMRWSVARLQDKPRCIVGQL 168 (168) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhHhhcCCCccHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceeecC Confidence 999999999999999999999999999999999999987 4678999999999999999999999999999 No 7 >protein:vir:1155 Length: 153 # NCBI annotation: predicted capsid completion protein # Family: family:all:204 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490604;genbank:gi:17313224;genbank:GeneID:927321 Probab=100.00 E-value=1e-66 Score=382.39 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=145.3 Q ss_pred CCCCCCCCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Q lcl|Aclame:pro 1 MFNGRNQQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKST 80 (150) Q Consensus 1 mF~g~~~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~~ 80 (150) .|.|.+.+.++.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.||++|+++||++|++||+++ T Consensus 2 s~~~~~~~~~~~~I~n~gFwPdi~l~~fr~~~ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~~l~~vp~~~ 81 (153) T protein:vir:11 2 SGFIANGPVPAGHINSDPFWPTIELEHVRANLRIDSSVDPARLEVAVIAAVISVNRELRAWRLEKIAAGYAELAQVPSDK 81 (153) T ss_pred CCCCCCCCCCcceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhccccc Confidence 56677788888999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 81 VNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 81 i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) |||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 82 i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~ae~~~~~~~~l~rda~~AIr~i~G~~r~tveLI 153 (153) T protein:vir:11 82 VRDTSELVQLYLRAVQSATAAEVAERYRWYDTTTSGNDKAQDIATTIDDYRRDQRWAIRDFLKRPRTTVELI 153 (153) T ss_pred cCchHHHHHHHHHHHHHHHHHHHhhhhcCCCccHHHhhhhhhchhhHHHHHHHHHHHHHHhhCCCCceeeeC Confidence 999999999999999999999999999999999999987 4678999999999999999999999999999 No 8 >protein:vir:100333 Length: 171 # NCBI annotation: head completion protein L # Family: family:all:204 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655474;genbank:gi:109289942;genbank:GeneID:4157376 Probab=100.00 E-value=1.4e-66 Score=381.66 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=144.4 Q ss_pred CCCCCCC---CCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcc Q lcl|Aclame:pro 1 MFNGRNQ---QLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIA 77 (150) Q Consensus 1 mF~g~~~---~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp 77 (150) ||+|+++ ++++.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|+++|+++||++|++|| T Consensus 17 ~~~~~~~~~~~~~~~~I~ndgFwPdI~l~efr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~tLa~vp 96 (171) T protein:vir:10 17 ESSKNAIKPTAESDETITNNGFFPNIELLEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACD 96 (171) T ss_pred cCCCCCCCCCCCCCceecCCCcCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhcc Confidence 9999754 4566799999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 78 KSTVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 78 ~~~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) +++|||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 97 ~~~i~ges~~v~~Y~rAVya~AkA~Lle~yr~~dtt~~g~~~ae~l~~~~d~l~rda~~AIr~i~G~~R~tVeLI 171 (171) T protein:vir:10 97 DEQINGESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDILGENRMISELI 171 (171) T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhhhhcCCcchHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 999999999999999999999999999999999999999987 4678999999999999999999999999999 No 9 >protein:vir:5696 Length: 169 # NCBI annotation: gpL # Family: family:all:204 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839855;genbank:gi:30065710;genbank:GeneID:1260604 Probab=100.00 E-value=3.8e-66 Score=379.27 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=141.5 Q ss_pred CCCCCCC-CCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcccc Q lcl|Aclame:pro 1 MFNGRNQ-QLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKS 79 (150) Q Consensus 1 mF~g~~~-~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~ 79 (150) ||..+|. ++.+.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|+++|+++||++|++||++ T Consensus 17 ~~~~~p~~~~~~~~I~ndgFwPdI~l~efr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~~La~vp~~ 96 (169) T protein:vir:56 17 GTVVIPQPAGDEPVIKNTFFFPDIDPKRVRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTCLADVPAD 96 (169) T ss_pred CCccCCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcchh Confidence 3344443 345679999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 80 TVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 80 ~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) +|||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 97 ~i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~dtt~~g~~~ae~~~~~~d~l~rda~~AIr~i~G~~r~tveLI 169 (169) T protein:vir:56 97 DIDGESIKVFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWRDMRWAVARIQDKPRCIVSQI 169 (169) T ss_pred hcCChhHHHHHHHHHHHHHHHHHHhHhhcCCCccHHHhhhhhhchhhHHHHHHHHHHHHHHhhCCCCceeeeC Confidence 9999999999999999999999999999999999999987 4678999999999999999999999999999 No 10 >protein:vir:2018 Length: 169 # NCBI annotation: gpL # Family: family:all:204 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046762;genbank:gi:9630333;genbank:GeneID:1261510 Probab=100.00 E-value=5e-66 Score=378.57 Aligned_cols=150 Identities=18% Similarity=0.283 Sum_probs=141.2 Q ss_pred CCCCCC------CCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 1 MFNGRN------QQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQ 74 (150) Q Consensus 1 mF~g~~------~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~ 74 (150) =|+|++ +++.+.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|+++|+++||++|+ T Consensus 12 ~~s~~~~~~~p~~~~~~~~I~ndgFwPdI~l~~fr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~tLa 91 (169) T protein:vir:20 12 PVSGEGTVVIPQPAGDEPVIKNTFFFPDIDPKRVRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTRLA 91 (169) T ss_pred ccccCCccccCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH Confidence 155542 23456789999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 75 EIAKSTVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 75 ~Vp~~~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) +||+++|||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 92 ~vp~~~i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~dtt~~g~~~ae~~~~~~d~l~rda~~AIr~i~G~~r~tveLI 169 (169) T protein:vir:20 92 DVPADDIDGESIKVFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWRDMRWAVARIQGKPRCIVSQI 169 (169) T ss_pred hcchhhcCChhHHHHHHHHHHHHHHHHHHhHhhcCCCcchhhhhhhhcchhhHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 999999999999999999999999999999999999999999987 4678999999999999999999999999999 No 11 >protein:vir:79124 Length: 159 # NCBI annotation: head completion/stabilization protein L # Family: family:all:204 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165259;genbank:gi:145708084;genbank:GeneID:5247135 Probab=100.00 E-value=8.6e-66 Score=377.28 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=142.8 Q ss_pred CCCCCCC-----CCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh Q lcl|Aclame:pro 1 MFNGRNQ-----QLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQE 75 (150) Q Consensus 1 mF~g~~~-----~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~ 75 (150) +|.++++ ++.+.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|+++|+++||++|++ T Consensus 3 ~f~~~~~~~~~~~~~~~~I~n~gFwPdi~l~~fr~~~ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~~la~ 82 (159) T protein:vir:79 3 SFIAAAPVPTPAQPGGQPIGNDGFFPDIDVDQACAAMRLDGTVTPERLRAALVDAALSVNDELAAWKAQQLAAGFTELGA 82 (159) T ss_pred ccccCCCCCCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhh Confidence 6777653 23567899999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhc--cHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 76 IAKSTVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNRD--YVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 76 Vp~~~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~~--~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) ||+++|||+|.++++|+|||||+|||+|+|+|+++|+|++|++++ .++++++|||+++||||+|+|++|+||||| T Consensus 83 vp~~~i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~ae~~~~~~d~l~rda~~AIr~i~G~~r~tveLI 159 (159) T protein:vir:79 83 VPGQWIDGRSRHVHRYLRAVHCTAAAWLMERYRSFDATAAGDRKAEAENTSVDDLRRDARWAVSDITGAARTTVELI 159 (159) T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHhHhhcCCCcchhhhhHhhhhhHhHHHHHHHHHHHHHHhhCCCCceeeeC Confidence 999999999999999999999999999999999999999999974 578999999999999999999999999999 No 12 >protein:vir:6063 Length: 169 # NCBI annotation: gpL # Family: family:all:204 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878204;genbank:gi:33438903;genbank:GeneID:1457738 Probab=100.00 E-value=2e-65 Score=375.28 Aligned_cols=150 Identities=17% Similarity=0.269 Sum_probs=141.3 Q ss_pred CCCCCC------CCCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 1 MFNGRN------QQLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQ 74 (150) Q Consensus 1 mF~g~~------~~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~ 74 (150) =|+|++ +++.+.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|+++|+++||++|+ T Consensus 12 ~~s~~~~~~~p~~~~~~~~I~n~gFwPdI~l~efr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~~La 91 (169) T protein:vir:60 12 PVSGEGTVVIPQPAGDEPVIKNTFFFPDIDPKRVRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTRLA 91 (169) T ss_pred ccccCCcccCCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH Confidence 245543 23456689999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 75 EIAKSTVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 75 ~Vp~~~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) +||+++|||+|+++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 92 ~vp~~~i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~dtt~~g~~~ae~~~~~~d~l~rda~~AIr~i~G~~r~tveLI 169 (169) T protein:vir:60 92 DVPADDIDGESIKVFYYERAVCAMATASLYERYRGVDASAKGDKKPDSIDSTIDELWRDMRWAVARIQDKPRCIVSQI 169 (169) T ss_pred hccccccCChhHHHHHHHHHHHHHHHHHHhHhhcCCCcchhHhhhhhhchhhHHHHHHHHHHHHHHhhCCCCceeeeC Confidence 999999999999999999999999999999999999999999987 4678999999999999999999999999999 No 13 >protein:vir:98558 Length: 168 # NCBI annotation: gp7 # Family: family:all:204 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958062;genbank:gi:41057359;genbank:GeneID:2744229 Probab=100.00 E-value=2.4e-65 Score=374.84 Aligned_cols=150 Identities=20% Similarity=0.210 Sum_probs=140.1 Q ss_pred CCCCCCC-CCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcccc Q lcl|Aclame:pro 1 MFNGRNQ-QLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQEIAKS 79 (150) Q Consensus 1 mF~g~~~-~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~Vp~~ 79 (150) =|.-+|+ ++++.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.||++|+++||++|++||++ T Consensus 16 ~~~~~p~~~~~~~~I~ndgFwPdI~l~efr~~~Ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~a~G~~tLa~Vp~~ 95 (168) T protein:vir:98 16 PGVVIPVPETGDAVIKNTFFFPDVDPKRVRELMRLEQTVSDARLRHAIRTGMAETNAELYDYRLRQTAAGFKHLADVPAE 95 (168) T ss_pred CccccCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcchh Confidence 1122222 245678999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 80 TVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 80 ~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) +|||+|.++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 96 ~i~ges~~v~~Y~rAVya~AkA~Lle~yr~~dtt~~g~~~ae~l~~~~d~l~rda~~AIr~i~G~~R~tVeLI 168 (168) T protein:vir:98 96 EIDGENVRIFHYLSAVTAMATATLYERYRGVEATGKGDKKADSVETTIDDLWRDMRWSVARLQDKPRCIVGQL 168 (168) T ss_pred hcCChhHHHHHHHHHHHHHHHHHHhHhhcCCCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceeeeC Confidence 9999999999999999999999999999999999999987 4678999999999999999999999999999 No 14 >protein:vir:79188 Length: 159 # NCBI annotation: gp48, phage head completion protein (GPL) # Family: family:all:204 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111079;genbank:gi:134288751;genbank:GeneID:4960707 Probab=100.00 E-value=3e-65 Score=374.34 Aligned_cols=150 Identities=17% Similarity=0.294 Sum_probs=140.4 Q ss_pred CCCCC--CC---CCCCceecCCCcCCcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh Q lcl|Aclame:pro 1 MFNGR--NQ---QLESAVILNSGFWAHINIAEFQKERNIPLQMPVETVKSALITAMQELELDLKDVEQRYKARGINNVQE 75 (150) Q Consensus 1 mF~g~--~~---~~~~~~I~ndgFwPdi~~~~fr~~~Ri~~~vt~~rl~~al~~A~~~VN~~L~~~~~~~~a~G~~~L~~ 75 (150) =|.++ +. ++.+.+|+||||||||++++||+.||||++||++||+++|+.||++||.+|+.|+++|+++||++|++ T Consensus 3 sfv~~~~~~~~~~~~~~~I~n~gFwPdi~l~~fr~~~ri~~~vt~~rl~~al~~Ai~~VN~eL~~~~~~~~~~G~~~la~ 82 (159) T protein:vir:79 3 SFVATAAPAVAATPIEGTLTNDGFFPDIDLSALRDAMRLDGTVTAERLRHAARDALLTVNDELAAWRARQRAAGAATLAD 82 (159) T ss_pred CCcCCCCCCCCCCCCCceecCCCCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh Confidence 24333 22 23356899999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhh--ccHHHHHHHHHHHHHHHHHhhCCCCceeeeC Q lcl|Aclame:pro 76 IAKSTVNNENPAQTLYKKAVFARAKADLLPEFFALSAREIHQNR--DYVEEQKSLLAEATRAIRTLKGKKRGSVHLL 150 (150) Q Consensus 76 Vp~~~i~g~s~~~~~Y~rAVy~~AkA~L~e~y~~~d~t~~g~~~--~~~~~~d~~~r~a~~AIr~i~G~~r~~VeLI 150 (150) ||+++|||+|.++++|+|||||+|||+|+|+|+++|+|++|+++ +.++++++|||+++||||+|+|++|+||||| T Consensus 83 vp~~~i~ges~~~~~Y~rAVy~~AkA~Lle~y~~~d~t~~g~~~ae~~~~~~d~l~rda~~AIr~i~G~~r~tveLI 159 (159) T protein:vir:79 83 VPAPRIDGESAHVARYRRAVYHLTHADVTEKYRGYDTTKSGGQVAADLAATVDDSRRAARWAISDILGIARSTVELI 159 (159) T ss_pred ccccccCchhHHHHHHHHHHHHHHHHHHhHhhcCCCcchhHhhHhhhhhHHHHHHHHHHHHHHHHhhCCCCceeeeC Confidence 99999999999999999999999999999999999999999987 4678999999999999999999999999999 Done!