Query lcl|Aclame:protein:vir:104585|NCBI_annot:gp13|genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Match_columns 268 No_of_seqs 38 out of 44 Neff 4.9 Searched_HMMs 1612 Date Sun Dec 1 09:25:48 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_145 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_145_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:104585 Length: 268 100.0 2E-145 1E-148 814.2 22.1 268 1-268 1-268 (268) 2 protein:vir:103004 Length: 268 100.0 2E-137 1E-140 770.3 18.3 268 1-268 1-268 (268) 3 protein:vir:104694 Length: 281 100.0 7E-126 4E-129 706.8 18.6 262 3-268 1-281 (281) 4 protein:vir:106985 Length: 276 100.0 5E-124 3E-127 696.6 20.9 264 3-268 1-276 (276) 5 protein:vir:107900 Length: 311 100.0 6E-122 4E-125 685.3 18.6 262 1-268 1-311 (311) 6 protein:vir:103451 Length: 309 100.0 6E-120 4E-123 674.2 18.3 262 1-268 1-309 (309) 7 protein:vir:101857 Length: 307 100.0 1E-119 9E-123 672.1 18.4 262 1-268 1-307 (307) 8 protein:vir:101153 Length: 307 100.0 1E-119 9E-123 672.1 18.4 262 1-268 1-307 (307) 9 protein:vir:7198 Length: 309 # 100.0 5E-119 3E-122 669.3 18.6 262 1-268 1-309 (309) 10 protein:vir:6589 Length: 310 # 100.0 2E-118 1E-121 666.5 19.4 263 1-268 1-309 (310) 11 protein:vir:81013 Length: 310 100.0 2E-118 1E-121 666.5 19.4 263 1-268 1-309 (310) 12 protein:vir:5657 Length: 307 # 100.0 6E-118 3E-121 663.4 19.0 262 1-268 1-307 (307) 13 protein:vir:6889 Length: 308 # 100.0 2E-117 1E-120 660.0 18.9 261 1-268 1-308 (308) 14 protein:vir:100534 Length: 314 100.0 1E-115 7E-119 650.7 18.2 263 1-268 1-314 (314) 15 protein:vir:98189 Length: 307 100.0 3E-115 2E-118 648.3 17.7 260 1-267 1-307 (307) 16 protein:vir:106428 Length: 306 100.0 3E-112 2E-115 632.2 17.1 263 1-268 2-306 (306) 17 protein:vir:106428 Length: 306 98.2 3.3E-09 2.1E-12 67.0 4.1 208 49-268 1-302 (306) 18 protein:vir:100534 Length: 314 92.0 0.0014 8.4E-07 36.3 5.5 221 19-268 1-310 (314) 19 protein:vir:81013 Length: 310 88.8 0.0018 1.1E-06 35.6 3.2 214 22-268 1-274 (310) 20 protein:vir:6589 Length: 310 # 88.8 0.0018 1.1E-06 35.6 3.2 214 22-268 1-274 (310) 21 protein:vir:103451 Length: 309 88.3 0.0019 1.2E-06 35.5 3.1 213 22-268 1-305 (309) No 1 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=1.7e-145 Score=814.22 Aligned_cols=268 Identities=100% Similarity=1.516 Sum_probs=267.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhhhcccceeeceeec Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKGFTQEGSTP 80 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~t~~~~~~~~~t~~ 80 (268) ||+|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++||+++++||++|+| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~rt~~~~~t~~~t~~ 80 (268) T protein:vir:10 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKGFTQEGSTP 80 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhcccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhcccccEEEEEEEEeeecchhhhhcccccccee Q lcl|Aclame:pro 81 WYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHYFLTSQYLETLDFVTNSQANRRVK 160 (268) Q Consensus 81 ~~~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~ 160 (268) |+|++||+++||+|+||++||+++++|++|++|||+|+|||||||+++|++++|++|+|++|||+++|++++++++++++ T Consensus 81 ~~~~~nyi~~p~~~~Gv~~vf~~~~~~~~~~~nm~~~~~q~~lnd~~~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~ 160 (268) T protein:vir:10 81 WYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHYFLTSQYLETLDFVTNSQANRRVK 160 (268) T ss_pred ccCCCcceecCccccchhhhhccccccccccchhhcccchhhccccccccceeEEEEEEeeeeecchhhhhccCCCccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccCCccceeccccccccceeeeeceecCCccchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHH Q lcl|Aclame:pro 161 WNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQI 240 (268) Q Consensus 161 fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i 240 (268) ||++++|||++.+|++|+++++++++|++++||++++++|||||||||||||+|+||||||+|||||||||||||||+|| T Consensus 161 ~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i 240 (268) T protein:vir:10 161 WNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQI 240 (268) T ss_pred eecccCceeeeeeccCcccchhhhhhhhhccCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 241 LEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 241 ~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) |+||++|+|+|||||+++|+.||++||| T Consensus 241 ~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 241 LEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 9999999999999999999999999999 No 2 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=1.8e-137 Score=770.29 Aligned_cols=268 Identities=82% Similarity=1.331 Sum_probs=266.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhhhcccceeeceeec Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKGFTQEGSTP 80 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~t~~~~~~~~~t~~ 80 (268) ||+|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++++....++++|+++ T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g~~~t~~g~~~ 80 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAAQSTTQQGSTN 80 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhhhhcccCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhcccccEEEEEEEEeeecchhhhhcccccccee Q lcl|Aclame:pro 81 WYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHYFLTSQYLETLDFVTNSQANRRVK 160 (268) Q Consensus 81 ~~~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~ 160 (268) |+|.+||+++||+|+||++||++++++++|++|||+|+|||||||++++++|++++|+|+++++++++++++++.+++++ T Consensus 81 ~~~~~~fi~~pp~v~gv~~vf~~~~~~~~~~~n~~~~~~q~~lnd~~~~~~g~il~y~~~~~~l~~~~~~~~s~~~~~~~ 160 (268) T protein:vir:10 81 WYENNNYVSLPPGVLGVNHVYTNIGASSVVPGNIFNIKYQIFLNDIYAMTHGQILHYFMTSQYLETLDWVTNSQANRRVK 160 (268) T ss_pred ccccccceecCCceeehhhhhhcccccccccccccccchhhhhcchhhhhHHhhhhhhhccceeehhhhhhcccCccceE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999 Q ss_pred cccccCCccceeccccccccceeeeeceecCCccchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHH Q lcl|Aclame:pro 161 WNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQI 240 (268) Q Consensus 161 fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i 240 (268) ||++++|||++.||+.+..+++++++|++++||++++++|||||||||||||+|+||||||+|||||||||||||||+|| T Consensus 161 ~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~dP~~~~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i 240 (268) T protein:vir:10 161 FNEHQARLYLDFDWDTLQAGDFIMVDLTMRQDPDEYTGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQI 240 (268) T ss_pred EEeeeceeEEeeccCCcccchhhhhHhhcccCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 241 LEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 241 ~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) |+||++|+|+|||||+++|+.||++||| T Consensus 241 ~eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 241 LEDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred HHHHHHHHHHHHHHHHhhcCCCcceecC Confidence 9999999999999999999999999999 No 3 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=6.7e-126 Score=706.84 Aligned_cols=262 Identities=37% Similarity=0.819 Sum_probs=248.8 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhhhcccc---------- Q lcl|Aclame:pro 3 ATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKG---------- 72 (268) Q Consensus 3 ~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~t~~~~---------- 72 (268) -|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++++++.. T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~av 80 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTDGVGIVT 80 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecCcceeEE Confidence 4699999999999999999999999999999999999999999999999999999999999999876411 Q ss_pred -------eee--ceeeccccccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhcccccEEEEEEEEee Q lcl|Aclame:pro 73 -------FTQ--EGSTPWYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHYFLTSQY 143 (268) Q Consensus 73 -------~~~--~~t~~~~~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~gdll~y~~~~q~ 143 (268) ..| .+|+||++++||+..|+++.|+.++|.. .++.+.+|+|+..||+++||+|+|++++|++|+|++|| T Consensus 81 t~i~~t~~~~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~--~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m~~qy 158 (281) T protein:vir:10 81 TTATSTNIAGYGTTTSSWYETSNFLQVPDSVVGIEKIFKF--DTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSMVKSY 158 (281) T ss_pred EeeeccccccccccccchhhcccceecCccceeeeeeccc--cccccCcceeecchhhhhhhhccCCchhhhhhhhhhhh Confidence 013 3479999999999999999999999975 46688899999999999999999999999999999999 Q ss_pred ecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCccchhccccchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 LETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSK 223 (268) Q Consensus 144 l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~yn~~WvKdyatal~K~~wG~nL~K 223 (268) ++++|+++++. ++|+||+++||||++.||.....++|++++|+++.||+++|++|||||||||||||+|+||||||+| T Consensus 159 l~~~d~v~n~~--~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y~~~dP~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K 236 (281) T protein:vir:10 159 LEDIDFLLTTD--KQVRFNKRQDRLYLDIDWGAESLDNFLVLDCYRALDPTSFTQVYNDPFLKLYLTALMKRQWGQNLIK 236 (281) T ss_pred hhhhHhhcCCC--ceEEEeeeCCeEEEEEecccccCCCceEEeeeeccCCcccccccchhHHHHHHHHHHHHHHHHHHHH Confidence 99999999975 6899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 224 YDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 224 fqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ||||||||||||||+|||+||++|+|+|||||+++|+.||++||| T Consensus 237 ~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 237 FRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred hCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 999999999999999999999999999999999999999999999 No 4 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=4.8e-124 Score=696.64 Aligned_cols=264 Identities=34% Similarity=0.720 Sum_probs=252.0 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhhhccccee----ecee Q lcl|Aclame:pro 3 ATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKGFT----QEGS 78 (268) Q Consensus 3 ~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~t~~~~~~----~~~t 78 (268) -|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++++++.+.+ +..+ T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~~~~~~~~~~~s~ 80 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRFTSSDQLTTAPNN 80 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhhhhhhhcccccce Confidence 469999999999999999999999999999999999999999999999999999999999999998875543 3346 Q ss_pred eccccccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhcccc--------cEEEEEEEEeeecchhhh Q lcl|Aclame:pro 79 TPWYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHG--------QILHYFLTSQYLETLDFV 150 (268) Q Consensus 79 ~~~~~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~g--------dll~y~~~~q~l~~id~~ 150 (268) ++|.|+.||+.+||.|+|+.+||.. .+++..+|+|+..+||||||+||++.| ++++|+|+++|++++|.+ T Consensus 81 ~~~~g~~~Y~~~pd~v~gi~~v~~g--~s~~~g~n~f~~~~q~fl~d~~~~~~~ql~~~g~~~~~dy~~ve~~~~~id~~ 158 (276) T protein:vir:10 81 DDWENRNNYIQVPDAVIGISKVFGV--SSNFLRNNLFGLSNQYYLMDLFSFSTGSAFSFGNFDLTNYYMIKQHFETIDMI 158 (276) T ss_pred eeeeccCcceecCcchhhhhhhccc--CccccCCccccccHHHHHHHHhcccccceeeccceeeeeEEEEEEEeccccee Confidence 8899999999999999999999974 567888999999999999999998754 599999999999999999 Q ss_pred hccccccceecccccCCccceeccccccccceeeeeceecCCccchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCC Q lcl|Aclame:pro 151 TNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQML 230 (268) Q Consensus 151 ~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLP 230 (268) +++++..+|+||++++|||++.+|++++.+.+++++|+|..||++++++|||||||||||||+|+||||||+|||||||| T Consensus 159 ~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~dP~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLP 238 (276) T protein:vir:10 159 INTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCYRYLNPDDFTQVYDDSFVKRYATALLKRQWGQNLIKYNSVQLP 238 (276) T ss_pred ecCCceeEEeeeccCCccccccccccccCCHHHHhhcccccCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 231 GGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 231 GGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) |||||||+|||+||++|+|+|||||+++|++||++||| T Consensus 239 GGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 239 GGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred CceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 99999999999999999999999999999999999999 No 5 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=5.7e-122 Score=685.28 Aligned_cols=262 Identities=24% Similarity=0.398 Sum_probs=236.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhhh------------ Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKT------------ 68 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~t------------ 68 (268) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++.+ T Consensus 1 MA-~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~ 79 (311) T protein:vir:10 1 MA-SESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGR 79 (311) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCc Confidence 87 89999999999999999999999999999999999999999999999999999999998877653 Q ss_pred -----------cccce-eec--eeeccc-------------cccccccCCcchhhh-hhhhcccccccccccccccccch Q lcl|Aclame:pro 69 -----------QAKGF-TQE--GSTPWY-------------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQ 120 (268) Q Consensus 69 -----------~~~~~-~~~--~t~~~~-------------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q 120 (268) +++++ +++ ++|||+ ..+++.++.|+++|+ +++|+++++|++|+++||+|.|+ T Consensus 80 ~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~d 159 (311) T protein:vir:10 80 NIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCNSFGPNAFGADLGYFTQLMQYRSMMQDLLVPLPD 159 (311) T ss_pred chhHHHHhhccccccccCCCCcccccccCchhhhhhhhhccccccccccccccccchHHHHHHHHHHHHHHHHhhccccc Confidence 33332 233 457774 123345678888887 78999999999999999999999 Q ss_pred hhhhhh-------hhcccccEEEEEEEEeeecchhhhhccccccc-eecccccCCccceeccccccccceeeeeceec-C Q lcl|Aclame:pro 121 IFLNDI-------YSMTHGQILHYFLTSQYLETLDFVTNSQANRR-VKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMR-Q 191 (268) Q Consensus 121 ~~lnd~-------~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~-~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~-~ 191 (268) ||+|+. .||++||+|+||+++|||+++|.++++.++.+ ++|+.++|||+++++|+||. .+++|+|. . T Consensus 160 ~~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~----~~l~~~rag~ 235 (311) T protein:vir:10 160 YWYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPA----RRISGMRAGE 235 (311) T ss_pred cccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccc----cccccceeec Confidence 999994 58999999999999999999999998877766 58899999999999999983 67778766 8 Q ss_pred CccchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 192 DPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 192 dp~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ||++||++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||. +|+.||++||| T Consensus 236 dp~~~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~-~~~~Pp~~liG 311 (311) T protein:vir:10 236 DLGLQDGAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELD-LLDPPTPILIG 311 (311) T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHh-hcCCCchhccC Confidence 99999999999999999999999999999999999999999999999999999999999999996 69999999999 No 6 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=6e-120 Score=674.19 Aligned_cols=262 Identities=23% Similarity=0.388 Sum_probs=240.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK------------- 67 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~------------- 67 (268) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++. T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcc Confidence 9999999999999999999999999999999999999999999999999999999999998876554 Q ss_pred ---------hcccce-eec--eeeccc--------------cccccccCCcchhhh-hhhhcccccccccccccccccch Q lcl|Aclame:pro 68 ---------TQAKGF-TQE--GSTPWY--------------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQ 120 (268) Q Consensus 68 ---------t~~~~~-~~~--~t~~~~--------------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q 120 (268) |++++. +++ +|+||+ +++++-.+||+++|+ +++|++++||++|++++|+|.|+ T Consensus 81 v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd 160 (309) T protein:vir:10 81 VFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCC Confidence 343443 344 467886 245556689999998 89999999999999999999999 Q ss_pred hhhhh-------hhhcccccEEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCc Q lcl|Aclame:pro 121 IFLND-------IYSMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDP 193 (268) Q Consensus 121 ~~lnd-------~~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp 193 (268) ||||+ .+||..||++..|++++++.+++.++++.++ ++|..++|||+++.+|+|| ++++++|+|++|| T Consensus 161 ~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g--~~~~~~~d~~~~~~~~~~~---~~~l~~~~r~~dp 235 (309) T protein:vir:10 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVG--YGTVGPQDSWSLSERYNNP---DHNLVGRVVGQDP 235 (309) T ss_pred ceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccc--cccccCccccccccccccc---chhhhcceeccCC Confidence 99999 4689999999999999999999999998754 5666789999999999998 7899999999999 Q ss_pred cchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 194 TTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 194 ~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ++||++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||++ ++.|+.++|| T Consensus 236 ~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~-l~pP~~~i~G 309 (309) T protein:vir:10 236 DVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) T ss_pred cchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHh-ccCCcccccC Confidence 9999999999999999999999999999999999999999999999999999999999999985 7888888999 No 7 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=1.5e-119 Score=672.08 Aligned_cols=262 Identities=22% Similarity=0.393 Sum_probs=234.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcc----------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVT----------------- 63 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT----------------- 63 (268) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++| T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~ 79 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVF 79 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchh Confidence 98 779999999999999999999999999999999999999999999999999999999754 Q ss_pred ---hhhhhcccce-eece--eecccc-----------ccccccCCcchhhh-hhhhcccccccccccccccccchhhhhh Q lcl|Aclame:pro 64 ---EAIKTQAKGF-TQEG--STPWYG-----------QDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLND 125 (268) Q Consensus 64 ---~~~~t~~~~~-~~~~--t~~~~~-----------~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~lnd 125 (268) +++||++++. +++| ++||++ ...+..+.|+++|+ ++||+++|||+.|++|||+|+||||+|+ T Consensus 80 avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~ 159 (307) T protein:vir:10 80 AVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNS 159 (307) T ss_pred hhhhhhhhccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecC Confidence 4556776664 5665 578883 22223578999998 7999999999999999999999999999 Q ss_pred -------hhhcccccEEEEEEE-EeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCccchh Q lcl|Aclame:pro 126 -------IYSMTHGQILHYFLT-SQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFT 197 (268) Q Consensus 126 -------~~nf~~gdll~y~~~-~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~ 197 (268) .+||.+||+|+|||+ ++|++++++++++. ++++|+.+++|+++ +|.+.+.+++++++|+++.||++++ T Consensus 160 ~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~t 235 (307) T protein:vir:10 160 SSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTS--AGYGFAMSCDGDEP--SQSQLYGNPNLAGGAIYAGGSNGML 235 (307) T ss_pred CceeEEEeeeccCCceEEEEEEeccccchhhhhhccc--ccceEeeccccCCc--cchhhcCCchhhcccccccCccccc Confidence 679999999999996 66888888888754 67888888998755 4777888889999999999999987 Q ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 198 --DMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 198 --~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||+++|+.|| .+|| T Consensus 236 ~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~pp-i~mg 307 (307) T protein:vir:10 236 KDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPP-IIMG 307 (307) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCc-cccC Confidence 799999999999999999999999999999999999999999999999999999999998877777 6677 No 8 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=1.5e-119 Score=672.08 Aligned_cols=262 Identities=22% Similarity=0.393 Sum_probs=234.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcc----------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVT----------------- 63 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT----------------- 63 (268) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++| T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~ 79 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVF 79 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchh Confidence 98 779999999999999999999999999999999999999999999999999999999754 Q ss_pred ---hhhhhcccce-eece--eecccc-----------ccccccCCcchhhh-hhhhcccccccccccccccccchhhhhh Q lcl|Aclame:pro 64 ---EAIKTQAKGF-TQEG--STPWYG-----------QDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLND 125 (268) Q Consensus 64 ---~~~~t~~~~~-~~~~--t~~~~~-----------~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~lnd 125 (268) +++||++++. +++| ++||++ ...+..+.|+++|+ ++||+++|||+.|++|||+|+||||+|+ T Consensus 80 avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~ 159 (307) T protein:vir:10 80 AVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNS 159 (307) T ss_pred hhhhhhhhccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecC Confidence 4556776664 5665 578883 22223578999998 7999999999999999999999999999 Q ss_pred -------hhhcccccEEEEEEE-EeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCccchh Q lcl|Aclame:pro 126 -------IYSMTHGQILHYFLT-SQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFT 197 (268) Q Consensus 126 -------~~nf~~gdll~y~~~-~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~ 197 (268) .+||.+||+|+|||+ ++|++++++++++. ++++|+.+++|+++ +|.+.+.+++++++|+++.||++++ T Consensus 160 ~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~t 235 (307) T protein:vir:10 160 SSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTS--AGYGFAMSCDGDEP--SQSQLYGNPNLAGGAIYAGGSNGML 235 (307) T ss_pred CceeEEEeeeccCCceEEEEEEeccccchhhhhhccc--ccceEeeccccCCc--cchhhcCCchhhcccccccCccccc Confidence 679999999999996 66888888888754 67888888998755 4777888889999999999999987 Q ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 198 --DMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 198 --~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||+++|+.|| .+|| T Consensus 236 ~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~pp-i~mg 307 (307) T protein:vir:10 236 KDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPP-IIMG 307 (307) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCc-cccC Confidence 799999999999999999999999999999999999999999999999999999999998877777 6677 No 9 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=4.6e-119 Score=669.35 Aligned_cols=262 Identities=24% Similarity=0.396 Sum_probs=238.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK------------- 67 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~------------- 67 (268) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++. T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcc Confidence 9999999999999999999999999999999999999999999999999999999999998876553 Q ss_pred ---------hcccce-eece--eeccc--------------cccccccCCcchhhh-hhhhcccccccccccccccccch Q lcl|Aclame:pro 68 ---------TQAKGF-TQEG--STPWY--------------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQ 120 (268) Q Consensus 68 ---------t~~~~~-~~~~--t~~~~--------------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q 120 (268) |++++. +++| |+||+ +++++-.+||+++|+ ++||+++++|++|+++||+|.|+ T Consensus 81 v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd 160 (309) T protein:vir:71 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCC Confidence 343443 3444 57886 244555689999999 89999999999999999999999 Q ss_pred hhhhh-------hhhcccccEEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCc Q lcl|Aclame:pro 121 IFLND-------IYSMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDP 193 (268) Q Consensus 121 ~~lnd-------~~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp 193 (268) ||||+ .+||..||++..|++.+++.+++.++++.+ +++|..++|+|++...|+|| ++.+++|+|++|| T Consensus 161 ~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~--g~~~~~~~d~~~~~~~y~~~---~~~l~~~~r~~dp 235 (309) T protein:vir:71 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTV--GYGTVGPQDSWSLSERYNNP---DHNLVGRVVGQDP 235 (309) T ss_pred cccccccceEEEEEeeeecceEEEEEeeccccccchhhhcch--hhccccccccccceehhccc---chhhhcceeccCC Confidence 99999 467999999999999888889999998875 56677789999999999998 7899999999999 Q ss_pred cchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 194 TTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 194 ~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ++||++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||++++ .|+..+|| T Consensus 236 ~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~~~-pP~d~i~g 309 (309) T protein:vir:71 236 NVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLD-PPFGILVG 309 (309) T ss_pred cchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCcceeC Confidence 999999999999999999999999999999999999999999999999999999999999999765 66667889 No 10 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=1.5e-118 Score=666.47 Aligned_cols=263 Identities=25% Similarity=0.412 Sum_probs=232.9 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhh-------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAI-------------- 66 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~-------------- 66 (268) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~ 80 (310) T protein:vir:65 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVF 80 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCccee Confidence 999999999999999999999999999999999999999999999999999999999999877765 Q ss_pred ------hhcccce-eece--eeccc--------------cccccccCCcchhhh-hhhhcccccccccccccccccchhh Q lcl|Aclame:pro 67 ------KTQAKGF-TQEG--STPWY--------------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIF 122 (268) Q Consensus 67 ------~t~~~~~-~~~~--t~~~~--------------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~ 122 (268) ||+++++ +++| ++||+ +++.+..+.|+++|+ +++|+++|||+.++++||+|+|+|| T Consensus 81 avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~ 160 (310) T protein:vir:65 81 AVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYW 160 (310) T ss_pred eeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccc Confidence 4444443 3443 46665 233334578888887 7899999999999999999999999 Q ss_pred hhhh-------hhcccccEEEEEE-EEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCcc Q lcl|Aclame:pro 123 LNDI-------YSMTHGQILHYFL-TSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPT 194 (268) Q Consensus 123 lnd~-------~nf~~gdll~y~~-~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~ 194 (268) +|+. +||++||+|++|+ ++||++++|+++++. ..++++++++||+++.+|++|....+.+++|++..+|. T Consensus 161 yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:65 161 YNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVA--GYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cCCccceeeeeeecccCcEEEEEEEeecccCchhhhhccc--ceeEEcccCCccccccccccchhhhceeeeecccCCCc Confidence 9995 8999999999998 577777777776654 57899999999999999999999999999999999997 Q ss_pred chhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 195 TFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 195 ~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+ |+.||++|+= T Consensus 239 -~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~--~~~pP~~i~~ 309 (310) T protein:vir:65 239 -KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELE--LLDPPFGILM 309 (310) T ss_pred -cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHH--hhCCCCCeee Confidence 6999999999999999999999999999999999999999999999999999999999995 5565555444 No 11 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=1.5e-118 Score=666.47 Aligned_cols=263 Identities=25% Similarity=0.412 Sum_probs=232.9 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhh-------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAI-------------- 66 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~-------------- 66 (268) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~ 80 (310) T protein:vir:81 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVF 80 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCccee Confidence 999999999999999999999999999999999999999999999999999999999999877765 Q ss_pred ------hhcccce-eece--eeccc--------------cccccccCCcchhhh-hhhhcccccccccccccccccchhh Q lcl|Aclame:pro 67 ------KTQAKGF-TQEG--STPWY--------------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIF 122 (268) Q Consensus 67 ------~t~~~~~-~~~~--t~~~~--------------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~ 122 (268) ||+++++ +++| ++||+ +++.+..+.|+++|+ +++|+++|||+.++++||+|+|+|| T Consensus 81 avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~ 160 (310) T protein:vir:81 81 AVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYW 160 (310) T ss_pred eeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccc Confidence 4444443 3443 46665 233334578888887 7899999999999999999999999 Q ss_pred hhhh-------hhcccccEEEEEE-EEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCcc Q lcl|Aclame:pro 123 LNDI-------YSMTHGQILHYFL-TSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPT 194 (268) Q Consensus 123 lnd~-------~nf~~gdll~y~~-~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~ 194 (268) +|+. +||++||+|++|+ ++||++++|+++++. ..++++++++||+++.+|++|....+.+++|++..+|. T Consensus 161 yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:81 161 YNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVA--GYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cCCccceeeeeeecccCcEEEEEEEeecccCchhhhhccc--ceeEEcccCCccccccccccchhhhceeeeecccCCCc Confidence 9995 8999999999998 577777777776654 57899999999999999999999999999999999997 Q ss_pred chhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 195 TFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 195 ~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+ |+.||++|+= T Consensus 239 -~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~--~~~pP~~i~~ 309 (310) T protein:vir:81 239 -KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELE--LLDPPFGILM 309 (310) T ss_pred -cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHH--hhCCCCCeee Confidence 6999999999999999999999999999999999999999999999999999999999995 5565555444 No 12 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=5.6e-118 Score=663.40 Aligned_cols=262 Identities=24% Similarity=0.427 Sum_probs=237.5 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchh--------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEA--------------- 65 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~--------------- 65 (268) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~G~~d~~~~v~a 80 (307) T protein:vir:56 1 MQAYNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQTGIIDLDIPATA 80 (307) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccCCeEecCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999987776 Q ss_pred ----hhhcccceeece--eeccc-----------cccccccCCcchhhh--hhhhcccccccccccccccccchhhhhh- Q lcl|Aclame:pro 66 ----IKTQAKGFTQEG--STPWY-----------GQDNYVSTPPGTLGI--NHVYTNIGASSIVPGNIFNIKYQIFLND- 125 (268) Q Consensus 66 ----~~t~~~~~~~~~--t~~~~-----------~~~nyi~~p~~v~gv--~~vf~~~~~~~~~~~~~f~~~~q~~lnd- 125 (268) +|++...+++++ ++||+ |.++|.++|++.+|. +++|+++|||++|++++|+|.|+||+|+ T Consensus 81 vt~Iirt~~s~~t~dg~aty~w~tdfi~~~~gv~g~~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d~~yn~~ 160 (307) T protein:vir:56 81 ITKILRAESSFFTMDGNATYSWFSDFLQGLAGGPGAGSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYDYWYNGV 160 (307) T ss_pred hhhhhccCcccccCCCccccCccccceecccccccccceeeecccccchhhhhHHHHHHHHHHHHHhhcccccceeecCc Confidence 344533455654 56776 566677777666663 7999999999999999999999999999 Q ss_pred ------hhhcccccEEEEEEEEeeecchhhhhccccccceeccccc-CCccceeccccccccceeeeeceec-CCccchh Q lcl|Aclame:pro 126 ------IYSMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHS-NRLYLDFDWDDLTVGDYIMVDMTMR-QDPTTFT 197 (268) Q Consensus 126 ------~~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~-~rl~ld~d~~~~~~~~~~l~~~~~~-~dp~~~~ 197 (268) ..+|+.|+++..|++.+++.++..++++ ++|+.++ +|+|++.+|.+.+.+.+++++|++. .||++++ T Consensus 161 ~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~-----~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~t 235 (307) T protein:vir:56 161 NKQLRINANLSAGELIVVEAFVPSALLVSESATG-----IIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQFA 235 (307) T ss_pred ceeeeeeeeeccCCeEEEEeeccchhhhhhhhhh-----hcceeeecCcccccCCchhhccCcceeeeccccccCCcccc Confidence 3579999999999999999998887764 4555554 7999999999999999999999986 7999998 Q ss_pred c--cccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 198 D--MFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 198 ~--~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) + +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++ |+.||++||| T Consensus 236 ~~~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~-~~~P~~~liG 307 (307) T protein:vir:56 236 EQNAYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMS-LTVPLGVFMG 307 (307) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-ccCCchhhcC Confidence 5 99999999999999999999999999999999999999999999999999999999996 9999999999 No 13 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=2.3e-117 Score=660.00 Aligned_cols=261 Identities=26% Similarity=0.423 Sum_probs=227.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK------------- 67 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~------------- 67 (268) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+||+++. T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~k~g~f~~~d~~v 80 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDDEEKYRHGVFDMRGSNV 80 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeChhhhhccceeecCCccc Confidence 9999999999999999999999999999999999999999999999999999999999998876665 Q ss_pred --------hcccce-eec--eeeccc--------c-----ccccc-cCCcchhhh-hhhhcccccccccccccccccchh Q lcl|Aclame:pro 68 --------TQAKGF-TQE--GSTPWY--------G-----QDNYV-STPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQI 121 (268) Q Consensus 68 --------t~~~~~-~~~--~t~~~~--------~-----~~nyi-~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~ 121 (268) |++++. +++ ++|||+ + ++++- .+.++++|+ +++|+++|+|++|++|||+|.|+| T Consensus 81 ~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~~ 160 (308) T protein:vir:68 81 FAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPDF 160 (308) T ss_pred hhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhccccccc Confidence 444443 344 357777 1 12221 278888887 899999999999999999999999 Q ss_pred hhhhh-------hhcccccEEEEE-EEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCc Q lcl|Aclame:pro 122 FLNDI-------YSMTHGQILHYF-LTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDP 193 (268) Q Consensus 122 ~lnd~-------~nf~~gdll~y~-~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp 193 (268) |+|+. .||+.||+++.| +++||+++.|++++. ++|+.+++|++++.+|.-- .+++++++|++++|| T Consensus 161 ~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~-----~~y~~~~~rl~~~~~~~~~-~~~~~l~~~~~~~~p 234 (308) T protein:vir:68 161 WFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNT-----VGYGQVGPRDSWSISERYD-NPDHNLVGRRVGEDP 234 (308) T ss_pred ccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccc-----eeeeeecccccCccccccc-cchhhheeeeeccCC Confidence 99983 579999977777 557788888887653 5688899999999887432 235799999999999 Q ss_pred cchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 194 TTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 194 ~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ++++++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||+++| .|+.++|| T Consensus 235 ~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~-pP~~~i~g 308 (308) T protein:vir:68 235 ATKQGAYNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLD-PPAGILVG 308 (308) T ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCceeeC Confidence 999999999999999999999999999999999999999999999999999999999999999765 77778889 No 14 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=1.1e-115 Score=650.72 Aligned_cols=263 Identities=23% Similarity=0.402 Sum_probs=212.8 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK------------- 67 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~------------- 67 (268) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++. T Consensus 1 ma-~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~g~~d~~~~~v~ 79 (314) T protein:vir:10 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (314) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCEEeeCCccce Confidence 98 7799999999999999999999999999999999999999999999999999999999887753 Q ss_pred -------hcccce-eece--eeccc-----------cccccccCCcchhhh-hhhhcccccccccccccccccchhhhhh Q lcl|Aclame:pro 68 -------TQAKGF-TQEG--STPWY-----------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLND 125 (268) Q Consensus 68 -------t~~~~~-~~~~--t~~~~-----------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~lnd 125 (268) |++++. +++| +|||+ ++..+.++.|+++|+ .++|+++|+|+.|++|||+|+||||+|| T Consensus 80 avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d~~~n~ 159 (314) T protein:vir:10 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNS 159 (314) T ss_pred ehhhhhhcccccccccCccccccccCceeeeecccccccccceeccccccchhHHHHHHHHHHHHHHhhhcccccccccC Confidence 333222 2333 56666 122333577788888 7999999999999999999999999999 Q ss_pred h-------hhcccccEEEEEEEEeeecchhhhhccccc------cceecccccCCcccee--ccccccccceeeeeceec Q lcl|Aclame:pro 126 I-------YSMTHGQILHYFLTSQYLETLDFVTNSQAN------RRVKWNEHSNRLYLDF--DWDDLTVGDYIMVDMTMR 190 (268) Q Consensus 126 ~-------~nf~~gdll~y~~~~q~l~~id~~~~~~~~------~~~~fn~~~~rl~ld~--d~~~~~~~~~~l~~~~~~ 190 (268) . .||.++|||+||+++||++++|+++++... .+++|...+|++++.. .|.||. ..+...+.+ T Consensus 160 ~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~---~~~~~~~~g 236 (314) T protein:vir:10 160 TTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPN---MSHGQIYAG 236 (314) T ss_pred CcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcc---cccceeeec Confidence 4 489999999999999999999999975422 1233433444433333 234442 122222222 Q ss_pred -CCccchhccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 191 -QDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 191 -~dp~~~~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) ++|..++++|||||||||||||+||||||||+|||||||||||||||+|||+||++|+|+|||||+++|+.|| .+|| T Consensus 237 ~~~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~~pp-~~mg 314 (314) T protein:vir:10 237 QSNGMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPP-IIMG 314 (314) T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCc-cccC Confidence 2333579999999999999999999999999999999999999999999999999999999999998877666 6677 No 15 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=3.2e-115 Score=648.30 Aligned_cols=260 Identities=25% Similarity=0.429 Sum_probs=232.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEE------------------- Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIE------------------- 61 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~------------------- 61 (268) |+. +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+ T Consensus 1 m~t---~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~~~~~~~~~~v~a 77 (307) T protein:vir:98 1 MIT---NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFA 77 (307) T ss_pred CCc---CCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccccceecCCchHhH Confidence 773 9999999999999999999999999999999999999999999999999999995 Q ss_pred cchhhhhccccee-ece--eeccc-------------cccccccCCcchhhh-hhhhcccccccccccccccccchhhhh Q lcl|Aclame:pro 62 VTEAIKTQAKGFT-QEG--STPWY-------------GQDNYVSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLN 124 (268) Q Consensus 62 vT~~~~t~~~~~~-~~~--t~~~~-------------~~~nyi~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~ln 124 (268) ||+++|+++++.+ +++ |+||+ ++|+--.+|++++|+ +++|+++|+|++++++||+|.|+||+| T Consensus 78 VT~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~dy~yn 157 (307) T protein:vir:98 78 VTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) T ss_pred HHHHhhcCccceecccccccccccCcceeecCCcccccccccceecCccccchHHHHHHHHHHHHHHHHhhccccceeec Confidence 6677778877764 444 68886 112222367888887 899999999999999999999999999 Q ss_pred hh-------hhcccccEEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccce-eeeeceecCCccch Q lcl|Aclame:pro 125 DI-------YSMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDY-IMVDMTMRQDPTTF 196 (268) Q Consensus 125 d~-------~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~-~l~~~~~~~dp~~~ 196 (268) +. .||++||+|++|++.+++.++++++.+++ +|+.++++++++.+|.+.+.+.| ++++|||..+|.++ T Consensus 158 ~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~----~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~ 233 (307) T protein:vir:98 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVA----GYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) T ss_pred CcccceeeeeccccCceEEEEEeecccccchHHhcccc----cceeecccccccccchhhccchhhhhhcceeecCCCCc Confidence 93 58999999999999888888888888764 57778888888877766666665 88999999988888 Q ss_pred ---hccccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCccccc Q lcl|Aclame:pro 197 ---TDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLI 267 (268) Q Consensus 197 ---~~~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~i 267 (268) +++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||+++|+.||++|| T Consensus 234 ~~~t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 55999999999999999999999999999999999999999999999999999999999999999999999 No 16 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=2.7e-112 Score=632.21 Aligned_cols=263 Identities=21% Similarity=0.331 Sum_probs=230.4 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEc------------------ Q lcl|Aclame:pro 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEV------------------ 62 (268) Q Consensus 1 m~~~~~~sr~eLKdyiLrrLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~v------------------ 62 (268) ||+++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++ T Consensus 2 Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~~d~~~~~v~ 81 (306) T protein:vir:10 2 MSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGYIDISAYPVF 81 (306) T ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCeEecCCccce Confidence 99999999999999999999999999999999999999999999999999999999999875 Q ss_pred --chhhhhcccce-eece--eeccc--------cccccc-cCCcchhhh-hhhhcccccccccccccccccchhhhhhh- Q lcl|Aclame:pro 63 --TEAIKTQAKGF-TQEG--STPWY--------GQDNYV-STPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLNDI- 126 (268) Q Consensus 63 --T~~~~t~~~~~-~~~~--t~~~~--------~~~nyi-~~p~~v~gv-~~vf~~~~~~~~~~~~~f~~~~q~~lnd~- 126 (268) ||+.|+++++. +++| ++||+ +.+.+. .++|+++|. +++|+++++|+.|+++||+|+|+||||+. T Consensus 82 aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pDf~~n~~~ 161 (306) T protein:vir:10 82 AITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPDYWLDPVN 161 (306) T ss_pred eeeeeeccCcceeeeccccccccchhhhhhhhcccccchhhccchhhhhhhhHHHHHHHHHHHHHHHhccccceeEcCCc Confidence 55556666665 4544 68887 222222 378999987 89999999999999999999999999994 Q ss_pred ------hhcccccEEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCc--cchhc Q lcl|Aclame:pro 127 ------YSMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDP--TTFTD 198 (268) Q Consensus 127 ------~nf~~gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp--~~~~~ 198 (268) +||.+||.|..|++++++++++.++++.++++++++..++ |.....|.||. +.+.+.+++.+| ..+|+ T Consensus 162 ~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~-~~~~~~~~np~---~~l~~~~~g~~~~~~~~~~ 237 (306) T protein:vir:10 162 GVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGPTS-ADNKDKWMNPY---SRMPSNVAGRARSEFPDQG 237 (306) T ss_pred ceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCccc-cchhhhhccch---hhhccccccccCCCccccc Confidence 5899999999999999999999999999999999866554 55555677773 466666666555 46799 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 199 MFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 199 ~yn~~WvKdyatal~K~~wG~nL~Kfqg~qLPGGvtlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||+++| .||+++|| T Consensus 238 ~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~-~~ppi~mg 306 (306) T protein:vir:10 238 VYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLE-EPLPILMG 306 (306) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhcc-CCCccccC Confidence 9999999999999999999999999999999999999999999999999999999999887 55557888 No 17 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=98.17 E-value=3.3e-09 Score=67.05 Aligned_cols=208 Identities=11% Similarity=0.074 Sum_probs=96.8 Q ss_pred hhch---hhceee-------------eEEcchhhhhc----c-cce---eecee---e------cccccccccc-CCcch Q lcl|Aclame:pro 49 HYNG---SFQTFM-------------RIEVTEAIKTQ----A-KGF---TQEGS---T------PWYGQDNYVS-TPPGT 94 (268) Q Consensus 49 HydG---~~k~yl-------------~~~vT~~~~t~----~-~~~---~~~~t---~------~~~~~~nyi~-~p~~v 94 (268) .+-+ .++.=| .+.||.+-+.. + +-. --+|+ + .=.-++.++. .|++| T Consensus 1 ~Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~~d~~~~~v 80 (306) T protein:vir:10 1 MMSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGYIDISAYPV 80 (306) T ss_pred CCCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCeEecCCccc Confidence 1110 000000 13344432211 0 000 00110 0 0013455663 49999 Q ss_pred hhhhhhhccc-ccccccccccccccchhhhhhhhhcccc-----------cEEEEEEEEeeecchhhhhccccccceecc Q lcl|Aclame:pro 95 LGINHVYTNI-GASSIVPGNIFNIKYQIFLNDIYSMTHG-----------QILHYFLTSQYLETLDFVTNSQANRRVKWN 162 (268) Q Consensus 95 ~gv~~vf~~~-~~~~~~~~~~f~~~~q~~lnd~~nf~~g-----------dll~y~~~~q~l~~id~~~~~~~~~~~~fn 162 (268) ++|.+||+.. .+..+|-+|+|.|.+|.||+|+++++++ ||..|.+++||+++++.|+++- .-|-|| T Consensus 81 ~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~--pDf~~n 158 (306) T protein:vir:10 81 FAITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPL--PDYWLD 158 (306) T ss_pred eeeeeeeccCcceeeeccccccccchhhhhhhhcccccchhhccchhhhhhhhHHHHHHHHHHHHHHHhccc--cceeEc Confidence 9999999644 3445788999999999999999876655 7888999999999999999853 345566 Q ss_pred cccCCccceeccccccccceeeeeceecC----CccchhccccchHHHHHHHHH-------HHHHHHHHHHHhcCccCCC Q lcl|Aclame:pro 163 EHSNRLYLDFDWDDLTVGDYIMVDMTMRQ----DPTTFTDMFNDNWLKDYVEAL-------FQQQWGRNLSKYDGIQMLG 231 (268) Q Consensus 163 ~~~~rl~ld~d~~~~~~~~~~l~~~~~~~----dp~~~~~~yn~~WvKdyatal-------~K~~wG~nL~Kfqg~qLPG 231 (268) +.+.-+-+-.+ -+.+|++.+|++.+- +|+.- . +++|+.|- ...+|=-==....|+-.-+ T Consensus 159 ~~~~ql~i~~n---f~~~D~l~~e~~~ks~~~v~~~~~--~-----~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~ 228 (306) T protein:vir:10 159 PVNGVVQLTGN---FRENDVIIMEVHIQNFVELEKSVR--G-----VAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGR 228 (306) T ss_pred CCcceEEEEEe---ecCCcEEEEEeecccccccchhhh--c-----ccccccccCCccccchhhhhccchhhhccccccc Confidence 55554444333 334455555554331 11110 0 01111110 0000000000000000000 Q ss_pred ce-------eecHHHHHHHHHHHHHHHHHHHHHhccC-Ccc-----------------------------cccC Q lcl|Aclame:pro 232 GV-------TLNGRQILEDASKFKEDLEKDIRDRYEI-PPL-----------------------------DLIG 268 (268) Q Consensus 232 Gv-------tlnG~~i~~eA~~E~e~L~eel~~~ye~-Pp~-----------------------------~~iG 268 (268) ++ --|-+=+-+=|..-.++.--+.+.++.. +.+ ...| T Consensus 229 ~~~~~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~~~pp 302 (306) T protein:vir:10 229 ARSEFPDQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLEEPLP 302 (306) T ss_pred cCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhccCCCc Confidence 01 1234444444555555555555555543 111 1112 No 18 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=92.05 E-value=0.0014 Score=36.30 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=123.4 Q ss_pred hcCCceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh----------------------------hcc Q lcl|Aclame:pro 19 RLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK----------------------------TQA 70 (268) Q Consensus 19 rLGaPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~----------------------------t~~ 70 (268) +.=-| =+-. +++|.+|.--+. ==+.+.||.+-+ |.. T Consensus 1 ma~~~-----~s~~---eLkdyiLRrLGA--------Pvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~ 64 (314) T protein:vir:10 1 MSYTT-----NNPL---ELKDAILRRLGA--------PIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEE 64 (314) T ss_pred CCCCC-----CCHH---HHHHHHHHhcCC--------ceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechh Confidence 00000 0111 122222211110 011244554222 111 Q ss_pred cce----e----------------eceeeccccccccccCCcchhhhhhhhccccccccccccccccc---------chh Q lcl|Aclame:pro 71 KGF----T----------------QEGSTPWYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIK---------YQI 121 (268) Q Consensus 71 ~~~----~----------------~~~t~~~~~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~---------~q~ 121 (268) +.. . +.++.+|.|+.+|..+||.++|+.|+|.. .++++...|+|+.. |+. T Consensus 65 ~~k~g~~d~~~~~v~avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~-~~~~~~~pn~fg~~~~yf~~~m~y~~ 143 (314) T protein:vir:10 65 QAKTGVISFAGGNVFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG-GQCRWYGPNAFGADLGYFTQLMSYRD 143 (314) T ss_pred hhcCCEEeeCCccceehhhhhhcccccccccCccccccccCceeeeecccccc-cccceeccccccchhHHHHHHHHHHH Confidence 100 0 01246788999999999999999999976 45556677999955 555 Q ss_pred hhhhhhh-------cccccEEEEEEEEeeecchhhhhccccccceecccccCCccceeccc----------cccccceee Q lcl|Aclame:pro 122 FLNDIYS-------MTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWD----------DLTVGDYIM 184 (268) Q Consensus 122 ~lnd~~n-------f~~gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~----------~~~~~~~~l 184 (268) +++|+++ .+.+.++.+ ..+|...|-+. .+ ...++....++++.+.+|. ..+.++... T Consensus 144 ml~d~~~pl~d~~~n~~~~~l~i---~~nf~~~Dll~-~e--~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~ 217 (314) T protein:vir:10 144 MMGDMLSPLPDFFFNSTTEMMRV---AGKLQKGDLLV-FE--VYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVP 217 (314) T ss_pred HHHhhhcccccccccCCcceEEE---eecccCCcEEE-EE--EEeccccccchhccccccccceeeeeceecccccccch Confidence 6777664 556778874 77899999544 23 4578899999999999984 345678889 Q ss_pred eeceecCCcc-chhcc---------ccchHHHHHHHHHHHHHHHHHHHHhcCcc---CCCceeecHHHHHHHHHHHHHHH Q lcl|Aclame:pro 185 VDMTMRQDPT-TFTDM---------FNDNWLKDYVEALFQQQWGRNLSKYDGIQ---MLGGVTLNGRQILEDASKFKEDL 251 (268) Q Consensus 185 ~~~~~~~dp~-~~~~~---------yn~~WvKdyatal~K~~wG~nL~Kfqg~q---LPGGvtlnG~~i~~eA~~E~e~L 251 (268) ++|++..||+ .++++ ..+.|=-.| +|+. -.-|.|-|-=| ==.|++|=|== ==++++-+|+- T Consensus 218 ~~~~~~~nP~~~~~~~~~g~~~~~~~~~~yNnrW----vKdY-aTALvK~~wGqnL~K~qG~qLPGGV-TldG~~l~eea 291 (314) T protein:vir:10 218 SVAQKYANPNMSHGQIYAGQSNGMSKDNSYNNRW----VKDM-ATAFVKELNGQVLAKHQGMQLPGGV-TIDGIRLIEEA 291 (314) T ss_pred hhhhhhcCcccccceeeeccccccccccccchhh----HHHH-HHHHHHHHHHHHHHHhCCcccCCce-eecHHHHHHHH Confidence 9999999998 55554 233343333 4443 34566654311 12344333321 12567777766 Q ss_pred HHHHHHhccCC--cccccC Q lcl|Aclame:pro 252 EKDIRDRYEIP--PLDLIG 268 (268) Q Consensus 252 ~eel~~~ye~P--p~~~iG 268 (268) ++|+..+=|+- .--+-| T Consensus 292 ~~E~e~Lreel~~~~~~pp 310 (314) T protein:vir:10 292 RIDIDKLRQELELLDGPPP 310 (314) T ss_pred HHHHHHHHHHHhhccCCCc Confidence 66554222221 112223 No 19 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=88.76 E-value=0.0018 Score=35.62 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=106.6 Q ss_pred CceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh----------------------------hccc-- Q lcl|Aclame:pro 22 FPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK----------------------------TQAK-- 71 (268) Q Consensus 22 aPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~----------------------------t~~~-- 71 (268) --.-... +-.| ++|.+|.--+. ==+.+.||.+-+ |.-+ T Consensus 1 m~~~~~~-s~~e---LkdyiLRrLGA--------Pvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~ 68 (310) T protein:vir:81 1 MSGYVTN-NPRE---LKDAILRRLGA--------PVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQ 68 (310) T ss_pred CCCCCCC-CHHH---HHHHHHHhcCC--------ceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhc Confidence 0000000 0111 11111111000 011244554322 1100 Q ss_pred c------------e-----eeceeeccc-cccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhccccc Q lcl|Aclame:pro 72 G------------F-----TQEGSTPWY-GQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQ 133 (268) Q Consensus 72 ~------------~-----~~~~t~~~~-~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~gd 133 (268) . . |..|+..|. |+.+|+.+||.++|+.|+|..+.++.+ +.+.| +...++ T Consensus 69 ~g~~d~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~---~~~~~----------~~~g~~ 135 (310) T protein:vir:81 69 HGVFDLSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCS---KFYGP----------NAMGGD 135 (310) T ss_pred CCeeeeCCcceeeeehhhhccccccccccccccccccCceeeeeccccccccchhh---hhccc----------cccchh Confidence 0 0 112233444 788999999999999999987655543 44443 112233 Q ss_pred EEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCccchhcc-----------ccc Q lcl|Aclame:pro 134 ILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDM-----------FND 202 (268) Q Consensus 134 ll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~-----------yn~ 202 (268) +--|-+..||-.....+++.- ..|-||++++.+.+-.+ -+.|+.+++||+++.-.+..+-+ -.+ T Consensus 136 l~y~~~l~~y~~~~q~~ln~l--pdy~yn~~~~ql~i~~n---f~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~ 210 (310) T protein:vir:81 136 LGYFEQLMSYRATMQNMLNPL--PDYWYNSANGQLKITGN---FREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCST 210 (310) T ss_pred hhhhhHHHHHHHHHHHHhCcc--cccccCCccceeeeeee---cccCcEEEEEEEeecccCchhhhhcccceeEEcccCC Confidence 333344556666777777653 45889999999888665 45789999999877544443222 123 Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccCCCce-eecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 203 NWLKDYVEALFQQQWGRNLSKYDGIQMLGGV-TLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 203 ~WvKdyatal~K~~wG~nL~Kfqg~qLPGGv-tlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) +|=-+-...-..+.-+.+++-+.- --|... .-|-+=+-+=|..-.++.--+.+.++..-. +-| T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~q--LPG 274 (310) T protein:vir:81 211 AGGISAVYDNPTAGLSGIVAGMGP-ISENKQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQ--LPG 274 (310) T ss_pred ccccccccccchhhhceeeeeccc-CCCccccccchhHHHHHHHHHHHHHHHHHHHHhCCcc--CCC Confidence 332222222222222333322211 112221 356666777788888888877777877411 123 No 20 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=88.76 E-value=0.0018 Score=35.62 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=106.6 Q ss_pred CceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhh----------------------------hccc-- Q lcl|Aclame:pro 22 FPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK----------------------------TQAK-- 71 (268) Q Consensus 22 aPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~----------------------------t~~~-- 71 (268) --.-... +-.| ++|.+|.--+. ==+.+.||.+-+ |.-+ T Consensus 1 m~~~~~~-s~~e---LkdyiLRrLGA--------Pvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~ 68 (310) T protein:vir:65 1 MSGYVTN-NPRE---LKDAILRRLGA--------PVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQ 68 (310) T ss_pred CCCCCCC-CHHH---HHHHHHHhcCC--------ceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhc Confidence 0000000 0111 11111111000 011244554322 1100 Q ss_pred c------------e-----eeceeeccc-cccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhccccc Q lcl|Aclame:pro 72 G------------F-----TQEGSTPWY-GQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQ 133 (268) Q Consensus 72 ~------------~-----~~~~t~~~~-~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~gd 133 (268) . . |..|+..|. |+.+|+.+||.++|+.|+|..+.++.+ +.+.| +...++ T Consensus 69 ~g~~d~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~---~~~~~----------~~~g~~ 135 (310) T protein:vir:65 69 HGVFDLSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCS---KFYGP----------NAMGGD 135 (310) T ss_pred CCeeeeCCcceeeeehhhhccccccccccccccccccCceeeeeccccccccchhh---hhccc----------cccchh Confidence 0 0 112233444 788999999999999999987655543 44443 112233 Q ss_pred EEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCccchhcc-----------ccc Q lcl|Aclame:pro 134 ILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDM-----------FND 202 (268) Q Consensus 134 ll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~-----------yn~ 202 (268) +--|-+..||-.....+++.- ..|-||++++.+.+-.+ -+.|+.+++||+++.-.+..+-+ -.+ T Consensus 136 l~y~~~l~~y~~~~q~~ln~l--pdy~yn~~~~ql~i~~n---f~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~ 210 (310) T protein:vir:65 136 LGYFEQLMSYRATMQNMLNPL--PDYWYNSANGQLKITGN---FREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCST 210 (310) T ss_pred hhhhhHHHHHHHHHHHHhCcc--cccccCCccceeeeeee---cccCcEEEEEEEeecccCchhhhhcccceeEEcccCC Confidence 333344556666777777653 45889999999888665 45789999999877544443222 123 Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccCCCce-eecHHHHHHHHHHHHHHHHHHHHHhccCCcccccC Q lcl|Aclame:pro 203 NWLKDYVEALFQQQWGRNLSKYDGIQMLGGV-TLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) Q Consensus 203 ~WvKdyatal~K~~wG~nL~Kfqg~qLPGGv-tlnG~~i~~eA~~E~e~L~eel~~~ye~Pp~~~iG 268 (268) +|=-+-...-..+.-+.+++-+.- --|... .-|-+=+-+=|..-.++.--+.+.++..-. +-| T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~q--LPG 274 (310) T protein:vir:65 211 AGGISAVYDNPTAGLSGIVAGMGP-ISENKQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQ--LPG 274 (310) T ss_pred ccccccccccchhhhceeeeeccc-CCCccccccchhHHHHHHHHHHHHHHHHHHHHhCCcc--CCC Confidence 332222222222222333322211 112221 356666777788888888877777877411 123 No 21 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=88.33 E-value=0.0019 Score=35.46 Aligned_cols=213 Identities=15% Similarity=0.136 Sum_probs=94.2 Q ss_pred CceEEEEecHHHHHHHHHHHHHHHHHHhhchhhceeeeEEcchhhhhc------------------------------cc Q lcl|Aclame:pro 22 FPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQ------------------------------AK 71 (268) Q Consensus 22 aPvi~IeVtd~Qi~d~Id~Alq~f~EyHydG~~k~yl~~~vT~~~~t~------------------------------~~ 71 (268) --+-+.. +-. +++|.+|.--+. ==+.+.||.+-+.. .+ T Consensus 1 ms~~~~~-s~~---eLkdyiLRrLGA--------Pvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~ 68 (309) T protein:vir:10 1 MSGYNSQ-NPK---ELKDVILRRLGA--------PIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEK 68 (309) T ss_pred CCCCCCC-CHH---HHHHHHHHhcCC--------ceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhh Confidence 0000000 001 111111111100 01124455432211 11 Q ss_pred cee--------------------eceeeccccccccccCCcchhhhhhhhcccccccccccccccccchhhhhhhhhccc Q lcl|Aclame:pro 72 GFT--------------------QEGSTPWYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTH 131 (268) Q Consensus 72 ~~~--------------------~~~t~~~~~~~nyi~~p~~v~gv~~vf~~~~~~~~~~~~~f~~~~q~~lnd~~nf~~ 131 (268) ..+ .....+|.|+.+|.-+||.++|+.+++..+. +-.++++.++++ + T Consensus 69 ~~~gv~d~~~~~v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~----------~s~~~~~~pn~~---g 135 (309) T protein:vir:10 69 YKTGVFDLRGSNVFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMG----------TSCNRFYGPNAF---G 135 (309) T ss_pred hccceeeccCcchhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccc----------cccccccCcccc---e Confidence 000 0112567788999889999999888874321 112222222211 2 Q ss_pred ccEEEEEEEEeeecchhhhhccccccceecccccCCccceeccccccccceeeeeceecCCccchhccccchHHHHHHHH Q lcl|Aclame:pro 132 GQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNWLKDYVEA 211 (268) Q Consensus 132 gdll~y~~~~q~l~~id~~~~~~~~~~~~fn~~~~rl~ld~d~~~~~~~~~~l~~~~~~~dp~~~~~~yn~~WvKdyata 211 (268) +|+.-|....||...+..+++.. ..|-||+++++|.+..+ ...++.+++|++.+.=++....+=|. ..|++| T Consensus 136 ~dl~y~~~l~sy~~m~~d~l~~~--pd~~yN~~~~~l~i~gn---~~~~~~i~~e~~~k~y~d~~~~v~~~---~g~~~~ 207 (309) T protein:vir:10 136 ADLGYFTQLTSYMGMMQDMLSPI--PDFWFNSANEQLKVMGN---FQKYDLIIVESWTKSYIDTNKMVGNT---VGYGTV 207 (309) T ss_pred ehhHHHHhHHHHHHHHHHHhccc--CCceeccccceEEEEEe---eecCceEEEEEecchhcccchhhccc---cccccc Confidence 34444445678889999999864 56999999999998776 66788899999655222222111000 111111 Q ss_pred HHHHHHH---------HHHH-HhcCccCCCce--eecHHHHHHHHHHHHHHHHHHHHHhccC-Ccc-------------- Q lcl|Aclame:pro 212 LFQQQWG---------RNLS-KYDGIQMLGGV--TLNGRQILEDASKFKEDLEKDIRDRYEI-PPL-------------- 264 (268) Q Consensus 212 l~K~~wG---------~nL~-Kfqg~qLPGGv--tlnG~~i~~eA~~E~e~L~eel~~~ye~-Pp~-------------- 264 (268) .-+.-|. .+|+ -+.| .=|.-. .-|-+=+-+=|..-.++.--+.+.++.. +.+ T Consensus 208 ~~~d~~~~~~~~~~~~~~l~~~~r~-~dp~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA 286 (309) T protein:vir:10 208 GPQDSWSLSERYNNPDHNLVGRVVG-QDPDVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEA 286 (309) T ss_pred cCcccccccccccccchhhhcceec-cCCcchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHH Confidence 1111111 0000 0111 111110 1344444455555555555555555553 111 Q ss_pred ---------------cccC Q lcl|Aclame:pro 265 ---------------DLIG 268 (268) Q Consensus 265 ---------------~~iG 268 (268) .-+| T Consensus 287 ~~E~e~LreeL~~l~pP~~ 305 (309) T protein:vir:10 287 RLEKEALREELYLLDPPFG 305 (309) T ss_pred HHHHHHHHHHHHhccCCcc Confidence 1111 Done!