BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:106918|NCBI_annot:tail tube protein gp19|genbank:acc:YP_195137;genbank:gi:58532914;goa:Q5GQN5;uniprot:Q5GQ N5;genbank:GeneID:3260390 (204 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: t... 423 e-121 gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: g... 149 2e-38 gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T... 139 2e-35 gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: g... 132 3e-33 gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tai... 91 9e-21 gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp... 91 9e-21 gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: g... 82 4e-18 gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: g... 82 5e-18 gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp... 82 7e-18 gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp1... 81 1e-17 gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp1... 80 1e-17 gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: g... 80 1e-17 gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: t... 80 1e-17 gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: t... 80 1e-17 gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp1... 76 4e-16 gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: g... 67 2e-13 >gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: tail tube protein gp19 # Family: family:all:1107 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195137;genbank:gi:58532914;goa:Q5GQN5;uni prot:Q5GQN5;genbank:GeneID:3260390 Length = 204 Score = 423 bits (1088), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 1 MATRLSNFIDMVGQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEV 60 MATRLSNFIDMVGQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEV Sbjct: 1 MATRLSNFIDMVGQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEV 60 Query: 61 PFRGRTVKIAGDRTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGY 120 PFRGRTVKIAGDRTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGY Sbjct: 61 PFRGRTVKIAGDRTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGY 120 Query: 121 ARNLKVKQLEKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWKV 180 ARNLKVKQLEKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWKV Sbjct: 121 ARNLKVKQLEKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWKV 180 Query: 181 ESGTTQNGVSGVKSGIGDQRLVEN 204 ESGTTQNGVSGVKSGIGDQRLVEN Sbjct: 181 ESGTTQNGVSGVKSGIGDQRLVEN 204 >gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214664;genbank:gi:61806305;genbank:GeneID :3294559 Length = 196 Score = 149 bits (376), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 111/178 (62%), Gaps = 11/178 (6%) Query: 16 VKPNMFMVDIVFPNEVPGASGDADMINL---LCKSAALPASNLGVIEVPFRGRTVKIAGD 72 +PN+F VD+ FP+E+ D+D++NL ++A LP+S +GVIEVPFRGR +KIAGD Sbjct: 19 ARPNLFQVDLAFPSEI---LQDSDLVNLGKFTVRAANLPSSQIGVIEVPFRGRVLKIAGD 75 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQI---NTHETNNAPLFTPSLDSGYARNLKVKQL 129 RTF+ WT T +ND + K+R E W I N + T+ L S SGY ++ V QL Sbjct: 76 RTFEPWTITIMNDSQFKLRSAMELWASSIQAYNENFTSAGSLGDNSDSSGYFADMTVHQL 135 Query: 130 EKN--GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWKVESGTT 185 ++ ES ++L+ Y Y FP+N++ ID+ Y +ND +EEFTVE Q YWK G + Sbjct: 136 ARDLKDGESPKILKSYKFYNIFPSNIAAIDLDYGNNDAVEEFTVEMQVQYWKPVGGAS 193 >gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T4-like tail tube protein # Family: family:all:1107 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214362;genbank:gi:61806002;genbank:GeneID :3294291 Length = 195 Score = 139 bits (351), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 106/185 (57%), Gaps = 10/185 (5%) Query: 5 LSNFID-MVGQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFR 63 +SNF + G G + N+F V + FP+ S D L K A LPASN+ IEVPFR Sbjct: 14 ISNFKSKLTGGGARANLFEVVLTFPDVAQPDSAVLDKARFLVKGANLPASNVAQIEVPFR 73 Query: 64 GRTVKIAGDRTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARN 123 GR +KIAGDRTFD+WT T +ND + IR FE+W IN ++N L P + Y + Sbjct: 74 GRVLKIAGDRTFDSWTVTVINDTDFAIRSAFERWSNTIN-RLSDNTGLTNP---ADYQSD 129 Query: 124 LKVKQLEKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWKVESG 183 V QL+++GS LR Y Y FPT V I+++YD+ I+EFTVE Q YW+ G Sbjct: 130 AYVYQLDRDGS----TLRSYRFYDTFPTQVGPIELSYDAQG-IQEFTVELQVQYWEAIKG 184 Query: 184 TTQNG 188 + N Sbjct: 185 SGPNA 189 >gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: gp130 # Family: family:all:1107 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717797;genbank:gi:113200634;genbank:GeneI D:4239185 Length = 202 Score = 132 bits (332), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 6/176 (3%) Query: 16 VKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGDRTF 75 +PN+F V++ FP + +G A + ++A LP+S +GV+EVPFRGR +KIAGDRTF Sbjct: 20 ARPNLFEVELNFPGAIAKGAGAARLGAFTVRAANLPSSQIGVVEVPFRGRVLKIAGDRTF 79 Query: 76 DTWTATFVNDKEMKIRGYFEQWLEQINTHETN---NAPLFTPSLDSGYARNLKVKQLEKN 132 + WT T +ND ++R FE+W ++I + N L +GY ++ V QL ++ Sbjct: 80 EPWTITVMNDSSFRLRKIFEKWAQKIQAYNENFTAAGTLGNADDSAGYFADMYVHQLSRD 139 Query: 133 --GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK-VESGTT 185 + LR Y FP+N+S ID+ + SND IEEFTVE Q YWK V+ G++ Sbjct: 140 IRDGRKPQPLRSYKFIDVFPSNISSIDLDFGSNDAIEEFTVELQVQYWKPVKPGSS 195 >gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891726;genbank:gi:33620609;genbank:GeneID :1725319 Length = 164 Score = 90.9 bits (224), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 17/165 (10%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + L+CK+A +PA+ + I + ++ R + IAGD Sbjct: 15 GDFARPNLFEVEIPYLGQ---------NFKLMCKAATVPAATVEKIAIGYQNRKINIAGD 65 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 R +D WT T ND KIR W +Q TH T +A T + + Y + V+QL +N Sbjct: 66 RVYDDWTITVFNDDAHKIRDAIVAWSDQ--THGTGSA--ITGATPAQYKKQAIVRQLNRN 121 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSY 177 E E LY FPTNV ++ + ++ N+++E F V F + Sbjct: 122 ----TESTSEKTLYGIFPTNVGEVTLDWEQNNEVETFEVTFAIDW 162 >gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469500;genbank:gi:157311457;genbank:Ge neID:5602118 Length = 164 Score = 90.9 bits (224), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 17/165 (10%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + L+CK+A +PA+ + I + ++ R + IAGD Sbjct: 15 GDFARPNLFEVEIPYLGQ---------NFKLMCKAATVPAATVEKIAIGYQNRKINIAGD 65 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 R +D WT T ND KIR W +Q TH T +A T + + Y + V+QL +N Sbjct: 66 RVYDDWTITVFNDDAHKIRDAIVAWSDQ--THGTGSA--ITGATPAQYKKQAIVRQLNRN 121 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSY 177 E E LY FPTNV ++ + ++ N+++E F V F + Sbjct: 122 ----TESTSEKTLYGIFPTNVGEVTLDWEQNNEVETFEVTFAIDW 162 >gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944107;genbank:gi:38640151;genbank:GeneID :2657917 Length = 162 Score = 82.4 bits (202), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 23/170 (13%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V E+P D CK A++P + + V ++ + +K+AGD Sbjct: 13 GDFARPNLFEV------EIPFMGKD---FKFKCKGASMPPGVVEPVPVSYQNKKMKLAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETN---NAPLFTPSLDSGYARNLKVKQL 129 RTF+ WT T ND+ R F +W + N AP + Y + V+QL Sbjct: 64 RTFEDWTITVYNDEAHNTRQQFIEWQNLAQALDRNILGEAP-------ASYKKEATVRQL 116 Query: 130 EKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 ++ G ++ R+Y +Y +PTN+++I +++D N+++E F V +W+ Sbjct: 117 DRKGKQT----RQYTVYGAWPTNIAEIALSWDQNNEVETFEVTLSIDWWQ 162 >gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595295;genbank:gi:161622601;genbank:Ge neID:5783767 Length = 163 Score = 81.6 bits (200), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I F + + CK+A +PA + + V + R + +AGD Sbjct: 13 GDFARPNLFEVEIPFLGK---------NFSFKCKAAPMPAGIVEKVPVGYMNRKINVAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 RTFD WT T ND R W Q H N T + + Y + V+Q ++ Sbjct: 64 RTFDDWTITIYNDDAHDTRQAIVDW--QNLCHGMTNE--ITGAAPAEYKKQAVVRQFHRD 119 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 G V +E +Y +PTNV ++ + +DSN+++E F F +W+ Sbjct: 120 GK---TVTKEVTIYGLWPTNVGEVQMDWDSNNEVETFESTFAIDWWE 163 >gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239197;genbank:gi:66391672;genbank:GeneID :3416366 Length = 161 Score = 81.6 bits (200), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + CK+A +PA+ + + V ++ R + +AGD Sbjct: 12 GDFARPNLFEVEIPYLGK---------NFRFKCKAATMPAATVEKVPVGYQNRKINVAGD 62 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 RT+D WT T ND R W ++ + + + Y + VKQ +N Sbjct: 63 RTYDDWTITIYNDDAHNTRDALVAWSNMMH----GMGDQISGDIPANYKKTATVKQKNRN 118 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 E+ E+ ++ FPTNV ++ + +DSN++I F F +W+ Sbjct: 119 ----DEITAEHTIHGLFPTNVGEVTLDWDSNNEISTFECTFALDWWE 161 >gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049781;genbank:gi:9632593;genbank:GeneID: 1258727 Length = 163 Score = 80.9 bits (198), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + CK+ ALPA + I V F R + +AGD Sbjct: 13 GDFARPNLFQVEISYLGQ---------NFTFQCKATALPAGIVEKIPVGFMNRKINVAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 RTFD WT T +ND+ R F W + I + N P + Y ++ V+Q ++ Sbjct: 64 RTFDDWTVTVMNDEAHDARQKFVDW-QSIAAGQGNEITGGKP---AEYKKSAIVRQYARD 119 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 V +E + +PTNV ++ + +DSN++I+ F V YW+ Sbjct: 120 AK---TVTKEIEIKGLWPTNVGELQLDWDSNNEIQTFEVTLALDYWE 163 >gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861871;genbank:gi:32453662;genbank:GeneID :1494297 Length = 163 Score = 80.5 bits (197), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + + C++ ALPA+ + + V + R + +AGD Sbjct: 13 GDFARPNLFEVEISYLGQ---------NFSFQCRATALPAAIVEKVPVSYMNRKINVAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 RTFD WT T +ND IR F W + I + N P + Y ++ V+Q ++ Sbjct: 64 RTFDDWTITVMNDDAHSIRQKFVDW-QGIAAGQGNEITGGKP---AEYKKSAIVRQFARD 119 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 V +E + +PTNV ++ + +DSN++IE F V +W+ Sbjct: 120 AK---TVTKEVEIVGLWPTNVGEVSLDWDSNNEIETFEVTLALDWWE 163 >gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238882;genbank:gi:66391957;genbank:GeneID :3416632 Length = 162 Score = 80.5 bits (197), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I F + CK+ +PA+ + I V + R + IAGD Sbjct: 13 GDFARPNLFEVEIPFLGQ---------NFKFKCKAGTMPAATVEKIPVGYMNRKLNIAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 R +D WT T ND R W TH N T + Y + V+Q ++N Sbjct: 64 RIYDDWTVTIYNDSAHITRQAIVDW--NAMTHGMGNT--ITGDIPEAYKKPGVVRQKDRN 119 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 GE +EY + FPTNV ++ + +D N+ + F V F +W+ Sbjct: 120 ----GESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTFEVTFALDWWE 162 >gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932510;genbank:gi:37651636;genbank:GeneID :2610681 Length = 162 Score = 80.5 bits (197), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I F + CK+ +PA+ + I V + R + IAGD Sbjct: 13 GDFARPNLFEVEIPFLGQ---------NFKFKCKAGTMPAATVEKIPVGYMNRKLNIAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 R +D WT T ND R W TH N T + Y + V+Q ++N Sbjct: 64 RIYDDWTVTIYNDSAHITRQAIVDW--NAMTHGMGNT--ITGDIPEAYKKPGVVRQKDRN 119 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 GE +EY + FPTNV ++ + +D N+ + F V F +W+ Sbjct: 120 ----GESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTFEVTFALDWWE 162 >gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: tail tube monomer # Family: family:all:1107 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803109;genbank:gi:116326389;genbank:GeneI D:4405486 Length = 163 Score = 80.5 bits (197), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + CK+ ALPA + I V F R + +AGD Sbjct: 13 GDFARPNLFQVEISYLGQ---------NFTFQCKATALPAGIVEKIPVGFMNRKINVAGD 63 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKN 132 RTFD WT T +ND+ R F W + I + N P + Y ++ V+Q ++ Sbjct: 64 RTFDDWTITVMNDEAHDARQKFVDW-QSIAAGQGNEITGGKP---AEYKKSAIVRQYARD 119 Query: 133 GSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 V +E + +PTNV ++ + +DSN++I+ F V YW+ Sbjct: 120 AK---TVTKEVEIKGLWPTNVGELQLDWDSNNEIQTFEVTLALDYWE 163 >gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID :2545785 Length = 166 Score = 75.9 bits (185), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 23/172 (13%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F V+I + + C+++++P ++ +EV ++ R IAGD Sbjct: 15 GDFARPNLFEVEIPYLGQ---------NFKFQCRASSMPPGSVEKVEVSYQNRKYNIAGD 65 Query: 73 RTFDTWTATFVNDKEMKIRGYFEQWLEQ---INTHETNNAPLFTPSLDSGYARNLKVKQL 129 RTFD W T ND+ IR W + + + P Y R + QL Sbjct: 66 RTFDDWNVTVYNDETHDIRKAIMAWQARAVGLGKDISGETP-------DQYKRTGTITQL 118 Query: 130 EKNGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWKVE 181 ++NG + +Y FPT V ++ + +DSN++IE F V F Y+ ++ Sbjct: 119 DRNGDPTTSA----TVYGIFPTVVGEVALDWDSNNEIETFEVTFSLDYFTLD 166 >gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656381;genbank:gi:109290132;genbank:GeneI D:4156575 Length = 163 Score = 66.6 bits (161), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 18/168 (10%) Query: 13 GQGVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGD 72 G +PN+F ++I + + K+ +PA+ + I V + R + +AGD Sbjct: 13 GDFARPNLFEIEIPYLGQ---------NFKFKAKAGTMPAATVEKIPVGYMNRKLNVAGD 63 Query: 73 RTFDTWTATFVNDKE-MKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEK 131 R FD WT T D + + W TH N T + Y + V+Q ++ Sbjct: 64 RIFDDWTITIYTDSAPITLDRQLSDW--NAMTHGMGNE--ITGDIPEAYKKPGIVRQKDR 119 Query: 132 NGSESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 NG+ + +EY + FPTNV ++ + +D N+ + F F +W+ Sbjct: 120 NGNTT----KEYTIVGLFPTNVGEVTLDWDDNNTVSTFETTFALDWWE 163 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.134 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,734 Number of Sequences: 514 Number of extensions: 4363 Number of successful extensions: 37 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 17 length of query: 204 length of database: 206,069 effective HSP length: 67 effective length of query: 137 effective length of database: 171,631 effective search space: 23513447 effective search space used: 23513447 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 35 (18.1 bits)