BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:103374|NCBI_annot:putative head assembly cofactor|genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID:2846 042 (536 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 1111 0.0 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 1106 0.0 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 68 3e-13 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 67 4e-13 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 39 1e-04 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 37 5e-04 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 35 0.002 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 32 0.022 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 32 0.023 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 29 0.13 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 28 0.27 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 27 0.43 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 27 0.55 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 26 1.4 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 25 2.9 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 25 3.0 gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp6... 23 8.1 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/536 (100%), Positives = 536/536 (100%) Query: 1 MSDPNQSSSPIPDLTKGQAKNLQTLEDYFKAKSASSKAQEELVSLENVSHESIRERCRVD 60 MSDPNQSSSPIPDLTKGQAKNLQTLEDYFKAKSASSKAQEELVSLENVSHESIRERCRVD Sbjct: 1 MSDPNQSSSPIPDLTKGQAKNLQTLEDYFKAKSASSKAQEELVSLENVSHESIRERCRVD 60 Query: 61 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFLKILTC 120 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFLKILTC Sbjct: 61 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFLKILTC 120 Query: 121 WFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGTI 180 WFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGTI Sbjct: 121 WFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGTI 180 Query: 181 NGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKC 240 NGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKC Sbjct: 181 NGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKC 240 Query: 241 IDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPELKPVSVLIRE 300 IDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPELKPVSVLIRE Sbjct: 241 IDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPELKPVSVLIRE 300 Query: 301 YVHDEALGLGHIWFAEVQNDPLDSIFKLLDKPIPDVPFDWENMEADAAFITVDPAGFRKK 360 YVHDEALGLGHIWFAEVQNDPLDSIFKLLDKPIPDVPFDWENMEADAAFITVDPAGFRKK Sbjct: 301 YVHDEALGLGHIWFAEVQNDPLDSIFKLLDKPIPDVPFDWENMEADAAFITVDPAGFRKK 360 Query: 361 SDHNVATLHKLYDGNPVAVQMQGGIWTPKETVYNVIRMALDNAVCIIGIESTGYQQSLCY 420 SDHNVATLHKLYDGNPVAVQMQGGIWTPKETVYNVIRMALDNAVCIIGIESTGYQQSLCY Sbjct: 361 SDHNVATLHKLYDGNPVAVQMQGGIWTPKETVYNVIRMALDNAVCIIGIESTGYQQSLCY 420 Query: 421 WMNEFLQAAGITWINVVELKTKNKTKLNRIQDYIKEVLGGDSFMSPKVRSVFSFYAGLYK 480 WMNEFLQAAGITWINVVELKTKNKTKLNRIQDYIKEVLGGDSFMSPKVRSVFSFYAGLYK Sbjct: 421 WMNEFLQAAGITWINVVELKTKNKTKLNRIQDYIKEVLGGDSFMSPKVRSVFSFYAGLYK 480 Query: 481 IGKTDNRDDYLDSPAYQKQILTDYGNLLVGVKNVQQSLDQLPPIVDVGIGEMENGY 536 IGKTDNRDDYLDSPAYQKQILTDYGNLLVGVKNVQQSLDQLPPIVDVGIGEMENGY Sbjct: 481 IGKTDNRDDYLDSPAYQKQILTDYGNLLVGVKNVQQSLDQLPPIVDVGIGEMENGY 536 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/536 (99%), Positives = 534/536 (99%) Query: 1 MSDPNQSSSPIPDLTKGQAKNLQTLEDYFKAKSASSKAQEELVSLENVSHESIRERCRVD 60 MSDPNQ SSPIPDLTKGQAKNLQTLEDYFKAKSASSKAQEELVSLENVSHESIRERCRVD Sbjct: 1 MSDPNQPSSPIPDLTKGQAKNLQTLEDYFKAKSASSKAQEELVSLENVSHESIRERCRVD 60 Query: 61 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFLKILTC 120 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFLKILTC Sbjct: 61 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFLKILTC 120 Query: 121 WFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGTI 180 WFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGTI Sbjct: 121 WFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGTI 180 Query: 181 NGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKC 240 NGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKC Sbjct: 181 NGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKC 240 Query: 241 IDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPELKPVSVLIRE 300 IDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPELKPVSVLIRE Sbjct: 241 IDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPELKPVSVLIRE 300 Query: 301 YVHDEALGLGHIWFAEVQNDPLDSIFKLLDKPIPDVPFDWENMEADAAFITVDPAGFRKK 360 YVHDEALGLGHIWFAEVQNDPLDSIFKLLDK IPD+PFDWENMEADAAFITVDPAGFRKK Sbjct: 301 YVHDEALGLGHIWFAEVQNDPLDSIFKLLDKSIPDIPFDWENMEADAAFITVDPAGFRKK 360 Query: 361 SDHNVATLHKLYDGNPVAVQMQGGIWTPKETVYNVIRMALDNAVCIIGIESTGYQQSLCY 420 SDHNVATLHKLYDGNPVAVQMQGGIWTPKETVYNVIRMALDNAVCIIGIESTGYQQSLCY Sbjct: 361 SDHNVATLHKLYDGNPVAVQMQGGIWTPKETVYNVIRMALDNAVCIIGIESTGYQQSLCY 420 Query: 421 WMNEFLQAAGITWINVVELKTKNKTKLNRIQDYIKEVLGGDSFMSPKVRSVFSFYAGLYK 480 WMNEFLQAAGITWINVVELKTKNKTKLNRIQDYIKEVLGGDSFMSPKVRSVFSFYAGLYK Sbjct: 421 WMNEFLQAAGITWINVVELKTKNKTKLNRIQDYIKEVLGGDSFMSPKVRSVFSFYAGLYK 480 Query: 481 IGKTDNRDDYLDSPAYQKQILTDYGNLLVGVKNVQQSLDQLPPIVDVGIGEMENGY 536 IGKTDNRDDYLDSPAYQKQILTDYGNLLVGVKNVQQSLDQLPPIVDVGIGEMENGY Sbjct: 481 IGKTDNRDDYLDSPAYQKQILTDYGNLLVGVKNVQQSLDQLPPIVDVGIGEMENGY 536 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 12/239 (5%) Query: 54 RERCRVDLNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTG 113 RER D ++A P ++ + L+ L +L P + A+ PRG K+ Sbjct: 41 RERASADYEYFARTYFPHYVKRGNALLHDYLYKRLPELVDHP-DGQHEAIAAPRGNAKST 99 Query: 114 FL-KILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLS-QPNIEEIFGLWSATKSVD 171 + +I W + G + LI+ + +A + + L P + F + V Sbjct: 100 LVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVW 159 Query: 172 NAKKKVGTINGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLE 231 V + KV + G+G +RG RPDL+V DD++ E S Q L Sbjct: 160 QVGTIVTANDAKVQVF---GSGKRMRGLRHGPHRPDLVVGDDLENDENVRSPEQRDKLEN 216 Query: 232 WFTATLVKCIDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPE 290 W T++ + + +I +G + D +L L KNP W AI+E WP Sbjct: 217 WLKKTVL-SLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAIIE-----WPH 269 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 67.4 bits (163), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 12/239 (5%) Query: 54 RERCRVDLNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTG 113 RER D ++A P ++ + L+ L +L P + A+ PRG K+ Sbjct: 41 RERASADYEYFARTYFPHYVKRGNALLHDYLYKRLPELVDHP-DGQHEAIAAPRGNAKST 99 Query: 114 FL-KILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLS-QPNIEEIFGLWSATKSVD 171 + +I W + G + LI+ + +A + + L P + F + V Sbjct: 100 LVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVW 159 Query: 172 NAKKKVGTINGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLE 231 V + KV + G+G +RG RPDL++ DD++ E S Q L Sbjct: 160 QVGTIVTANDAKVQVF---GSGKRMRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLEN 216 Query: 232 WFTATLVKCIDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPE 290 W T++ + + +I +G + D +L L KNP W AI+E WP Sbjct: 217 WLKKTVL-SLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAIIE-----WPH 269 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 24/213 (11%) Query: 61 LNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTGFL-KILT 119 F+A P +R P F+ F QL L + + PRG K+ L K+ Sbjct: 50 FEFFAYTYFPHHIRPPASLFHAHFFKRFPQLISSSSGLKEWWVA-PRGEAKSSLLTKVGP 108 Query: 120 CWFIHFGYAEFILI-----VCASEPKAVAFITDVDNMLSQPN----IEEIFGLWSATKSV 170 C+ + G + I + P V +IT + P + + L +A+ S+ Sbjct: 109 CYVVVQGLLQRPEIRAELGMTGPAPYFVDYITLLGAETRLPTKLLEVVKTELLVNASLSL 168 Query: 171 D-------NAKKKVGTINGKVVILLPA-GAGTAVRGTNEDHKRPDLIVCDDVQTRECALS 222 D + K+G + L A GA A+RGT RP L++ DD+ T + A S Sbjct: 169 DFPEVCGKGSVWKIGEFVSLSGVKLEAFGAEQAIRGTFHGASRPKLLLGDDLITDKEAKS 228 Query: 223 EVQNAALLEWFTATLVKCIDNYG-SNRRIIYLG 254 + +W L K ID G + + YLG Sbjct: 229 PTERNNRWDW----LEKAIDYLGPPDGSVKYLG 257 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 73/325 (22%), Positives = 123/325 (37%), Gaps = 56/325 (17%) Query: 37 KAQEELVSLENVSHESIRERCRVDLNFYAGLIIP-----RVMRVPFPAFYCQLFTLLTQL 91 +A+++L + + E +RER DL F+A L+ P V R F + Q +TL + Sbjct: 9 EAEKKLKRMPEKAKE-VRERALEDLYFFAKLVNPGYVYGEVHREIFA--WMQDYTLFGRG 65 Query: 92 NPDPYELMRFALGLPRGFVKTGFLKILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNM 151 + + + LPR +K+ + W I IL + A+ A + V N+ Sbjct: 66 SDLTSNKL---IMLPRAHLKSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNI 122 Query: 152 LSQPNIEEIF-----------GLWSATK-SVDNAKKKVGTINGKVVILLPAGAGTAVRGT 199 L+ F WS+ S+D+ ++K I + TA T Sbjct: 123 LASSVYNRYFPEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDATI-------ATAGLTT 175 Query: 200 NEDHKRPDLIVCDD---------------VQTRECALSEVQNAALLEWFTATLVKCIDNY 244 N D+IV DD VQ + + ++NA T D Y Sbjct: 176 NTTGWHADIIVADDLVVPENAYTEDGRESVQKKSSQFTSIRNAGGFTMACGTRYHPSDIY 235 Query: 245 GSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPEL-----KPVSVLIR 299 + R Y +++ + + + ++P W + A+ +D LWP K IR Sbjct: 236 ATWRSQKY--DIFDDEGM--KIDEHPVW-EIKEYAVEKDNIFLWPRTIREDGKAFGFDIR 290 Query: 300 EYVHDEALGLGHI-WFAEVQNDPLD 323 +A + +FA+ NDP D Sbjct: 291 VLARIKAEYSDRVQFFAQYYNDPND 315 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 5/111 (4%) Query: 43 VSLENVSHESIRERCRVDLNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFA 102 + LE+ +RE C L +A + P + + + +LF ++ + E++ Sbjct: 12 IPLEDPRLIELREACLHSLWIFAQAVEPHRV---YGECHKELFDWWQEMELE--EVLNTL 66 Query: 103 LGLPRGFVKTGFLKILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLS 153 +PR K+ + + CW I A I VCA+E A+ + D+ +L+ Sbjct: 67 ALMPRDHQKSHCIAVWVCWQIFKNPAVTIAYVCATESLAILQLYDIKQILT 117 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 31.6 bits (70), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 15/100 (15%) Query: 101 FALGLPRGFVKTGFLKILTCWFIH--FGYAEF-ILIVCASEPKAVAFITDVDNML-SQPN 156 F + L RG K GF+ L+ +FI G + + +V SE +A +V N + P Sbjct: 89 FFITLGRGGGKNGFISTLSNYFISPLHGINNYDVSVVANSEDQAKVSFKEVFNTIDGNPK 148 Query: 157 IEEIFGLW------SATKSV-----DNAKKKVGTINGKVV 185 +E F W AT SV NAK K G G V+ Sbjct: 149 LEGSFDAWKAQIIGKATNSVFKFQTSNAKTKDGGREGCVI 188 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 31.6 bits (70), Expect = 0.023, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 42/216 (19%) Query: 58 RVDLNF----YAGLIIPRVMRVPFPAFYCQLFTLLTQL--NPDPYELMRFALGLPRGFVK 111 RVD F +A LI R R F AF+ +L LTQ + D R L PRG +K Sbjct: 11 RVDALFDIWAFADLIGFRGGRKSFGAFHYELTDFLTQTQQHEDKDNRRRLVLA-PRGHLK 69 Query: 112 TGFLKIL-TCWFIHFGYAEFILIVCASEPKAVAFITDV-----DNMLSQ------PNIEE 159 + +L W I+ +L+ + + AFI ++ D L Q P+IE Sbjct: 70 STVCSVLYVLWRIYRNPDIRVLVGTNLKRLSRAFIRELRQYFEDTWLQQNVWNVRPHIEG 129 Query: 160 IF--GLWSATKSVDNAKKK-------VGTINGKVVILLPAGAGTAVR------------- 197 L ++ + N+++ + T+ ++ A +R Sbjct: 130 ALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKLIWSMEALQVIRPTVMKEPTVQTVS 189 Query: 198 -GTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEW 232 GT DL++ DD+ E + +E + +LEW Sbjct: 190 IGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEW 225 Score = 29.6 bits (65), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 350 ITVDPAGFRKKSDHNVATLHKLYDG--NPVAVQMQGGIWTPKETVYNVIRMALDNAVCII 407 + VDPA +KK+ N YD N ++ G +TP ET+ ++ +A + + Sbjct: 389 LVVDPAVSQKKTADNTVLTVGGYDNDKNLYIFDVKAGKFTPSETIKHIFTLADKYKLNAV 448 Query: 408 GIESTGYQQSLCYWMNE 424 +E+ G L Y + + Sbjct: 449 TLETVGGFALLSYQVKD 465 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNR--RIIYLGNMYPGDCI 262 R DL++ DD++T + L+ + A L+ TL K + ++R RI+YLG + I Sbjct: 156 RGDLLIPDDIETTKNGLTATERAKLI-----TLSKEFTSIVADRNGRILYLGTPQTRESI 210 Query: 263 LQML 266 L Sbjct: 211 YNTL 214 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 28.1 bits (61), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Query: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLG 254 R D+I+ DDV++ + A + ALLE T + I+ +G IIYLG Sbjct: 171 RADIILADDVESMQNART-AAGRALLEELTKEF-ESINQFGD---IIYLG 215 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 27.3 bits (59), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Query: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLGN 255 R D+I+ DDV++ + A + ALLE T + I+ +G IIYLG Sbjct: 171 RADIILADDVESMQNART-AAGRALLEELTKEF-ESINQFGD---IIYLGT 216 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 26.9 bits (58), Expect = 0.55, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLGN 255 R DL++ DD++ +++E+ LL+ T + I + RI+YLG Sbjct: 145 RADLMILDDIEVPGNSMTELMREKLLQ--LCTEAESILTPKDDSRIMYLGT 193 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 175 KKVGTINGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDV 214 K + NG V+ + AG+ + N +R DLIV D++ Sbjct: 156 KHIELPNGTVIHGITAGSKSGSGAANTRGQRADLIVLDEM 195 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 12/72 (16%) Query: 144 FITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGT--INGKVVILLPAGAGTAVRGTNE 201 + T V + L+ +E+ GL ++ + KV + I+G + ++ AG G+A+ G Sbjct: 135 YGTGVTDALTGLAVEDKLGL-----KINPKQAKVSSWRIDGAIGGMVAAGLGSAITG--- 186 Query: 202 DHKRPDLIVCDD 213 K DL + DD Sbjct: 187 --KSADLFIIDD 196 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%) Query: 312 IWFAEVQNDPLDSIFKLLD----KPIPDVPFDWENMEADAAFITVDPAGFRKKSDHNVAT 367 ++ E DP++ I L D KP P F FI + G+RKK+DH++ Sbjct: 58 VYLPEKAADPINFIEILPDVKTGKPYPLAMF--------QKFIIGNLYGWRKKTDHSLRR 109 Query: 368 LHK 370 K Sbjct: 110 FRK 112 >gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp68 # Family: family:all:543 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950546;genbank:gi:119952237;genbank:GeneI D:5075700 Length = 530 Score = 23.1 bits (48), Expect = 8.1, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 191 GAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRI 250 GA T +RGT KRP L V DD+ + + A S A+ + + +D + R++ Sbjct: 165 GAKTGLRGTKIFGKRPVLCVLDDLVSDDDARSRTSMEAIKDTVYKGVNHALD--PTRRKV 222 Query: 251 IYLGNMYPGDCIL 263 I+ G + + IL Sbjct: 223 IFNGTPFNKEDIL 235 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.138 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,017 Number of Sequences: 514 Number of extensions: 10845 Number of successful extensions: 38 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 21 length of query: 536 length of database: 206,069 effective HSP length: 76 effective length of query: 460 effective length of database: 167,005 effective search space: 76822300 effective search space used: 76822300 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)