BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:10361|NCBI_annot:terminase large subunit|genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID:26484 05 (561 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 1150 0.0 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 1061 0.0 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 972 0.0 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 508 e-146 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 503 e-144 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 108 1e-25 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 84 5e-18 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 79 1e-16 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 76 8e-16 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 76 9e-16 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 74 6e-15 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 73 7e-15 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 73 8e-15 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 73 8e-15 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 72 1e-14 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 72 1e-14 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 72 1e-14 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 67 4e-13 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 60 6e-11 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 59 2e-10 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 58 2e-10 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 57 7e-10 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 57 8e-10 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 56 1e-09 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 55 2e-09 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 55 3e-09 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 45 2e-06 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 43 1e-05 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 43 1e-05 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 43 1e-05 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 41 3e-05 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 41 4e-05 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 41 4e-05 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 40 6e-05 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 40 7e-05 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 39 1e-04 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 35 0.002 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 35 0.002 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 35 0.002 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 34 0.005 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 32 0.019 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 30 0.069 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 27 0.89 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 26 1.0 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 26 1.0 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 26 1.2 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 25 1.8 gi|13482|lcl|protein:vir:9757 Length: 471 # NCBI annotation: put... 25 3.0 gi|2942|lcl|protein:vir:105471 Length: 156 # NCBI annotation: pu... 24 3.6 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 24 3.7 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 24 4.4 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 23 7.6 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 23 7.6 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 23 7.6 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 23 7.6 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 23 7.6 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 23 8.6 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 23 9.1 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/561 (100%), Positives = 561/561 (100%) Query: 1 MKVPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPP 60 MKVPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPP Sbjct: 1 MKVPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPP 60 Query: 61 WVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIV 120 WVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIV Sbjct: 61 WVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIV 120 Query: 121 APTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSK 180 APTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSK Sbjct: 121 APTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSK 180 Query: 181 ASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFR 240 ASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFR Sbjct: 181 ASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFR 240 Query: 241 SIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN 300 SIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN Sbjct: 241 SIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN 300 Query: 301 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGG 360 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGG Sbjct: 301 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGG 360 Query: 361 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQ 420 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQ Sbjct: 361 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQ 420 Query: 421 DVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS 480 DVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS Sbjct: 421 DVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS 480 Query: 481 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA 540 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA Sbjct: 481 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA 540 Query: 541 ISLISLNPAGRGTVDDFLRRF 561 ISLISLNPAGRGTVDDFLRRF Sbjct: 541 ISLISLNPAGRGTVDDFLRRF 561 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 1061 bits (2744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/561 (93%), Positives = 550/561 (98%) Query: 1 MKVPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPP 60 + VPEYST+VPDWETRLE+GLSLIPPPIFP QAEL MSVF+RL+AVDVAGQPTYGECSPP Sbjct: 9 LTVPEYSTAVPDWETRLEEGLSLIPPPIFPEQAELMMSVFTRLRAVDVAGQPTYGECSPP 68 Query: 61 WVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIV 120 WVLDF RY+FGSYNA+TGHNLIKEFFCLVPKKSSKSSIASGVMLT LI GWRKSA+Y+IV Sbjct: 69 WVLDFCRYVFGSYNADTGHNLIKEFFCLVPKKSSKSSIASGVMLTMLITGWRKSATYMIV 128 Query: 121 APTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSK 180 APTIEVAQASFKPA+DSVRADPQLSKLI IS HT+TLTNRVSGAVLK++AADEN+VTGSK Sbjct: 129 APTIEVAQASFKPAADSVRADPQLSKLIQISAHTKTLTNRVSGAVLKIVAADENTVTGSK 188 Query: 181 ASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFR 240 ASVLLVDECHRLGTKEN SMLREAAGGLAARPEGFIIKLSTQ+SEPPAGVFKDDL+LFR Sbjct: 189 ASVLLVDECHRLGTKENGGSMLREAAGGLAARPEGFIIKLSTQSSEPPAGVFKDDLELFR 248 Query: 241 SIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN 300 ++RDG+V DKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN Sbjct: 249 NVRDGVVTDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN 308 Query: 301 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGG 360 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADP+LTLDTLI+RCEVAVVGIDGG Sbjct: 309 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPSLTLDTLIDRCEVAVVGIDGG 368 Query: 361 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQ 420 GLDDLLGLSVVGRCKKTRKWLSWSYGWCH+IALERVKQNASRLRDFEKAGELTIVDLPGQ Sbjct: 369 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHSIALERVKQNASRLRDFEKAGELTIVDLPGQ 428 Query: 421 DVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS 480 DVQELC+IVLKLEKSGLLPE+NAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS Sbjct: 429 DVQELCDIVLKLEKSGLLPEKNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS 488 Query: 481 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA 540 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA Sbjct: 489 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA 548 Query: 541 ISLISLNPAGRGTVDDFLRRF 561 ISLISLNPAGRGTVDDFLRRF Sbjct: 549 ISLISLNPAGRGTVDDFLRRF 569 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/561 (83%), Positives = 527/561 (93%) Query: 1 MKVPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPP 60 M PEY+T++PDW LE+G SL+PPPI+P QA LAMSVF+RL+AVDV G PT GECSPP Sbjct: 1 MTTPEYTTAMPDWAYLLEKGQSLVPPPIYPEQAALAMSVFTRLRAVDVPGSPTLGECSPP 60 Query: 61 WVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIV 120 W+LDFVRY+FG+Y+A+TG+NL+KE F LVPKKS+KSS+ASG+MLT LI+GWRKSASY+I+ Sbjct: 61 WILDFVRYVFGAYDADTGNNLLKELFLLVPKKSAKSSLASGIMLTALIIGWRKSASYIII 120 Query: 121 APTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSK 180 +PTIE+A SFKPA+DSVRADP+LSKL+ +S HTRT+TNRV+GAVLKV+AA E++VTGSK Sbjct: 121 SPTIEIAGNSFKPAADSVRADPELSKLLQVSAHTRTITNRVTGAVLKVLAAAEDTVTGSK 180 Query: 181 ASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFR 240 ASVLL+DE H +G KEN SSMLREAAGGLAARPEGF++KL+TQ+S+ PAGVFK DLDLFR Sbjct: 181 ASVLLIDELHLMGLKENGSSMLREAAGGLAARPEGFVLKLTTQSSQAPAGVFKSDLDLFR 240 Query: 241 SIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKN 300 ++RDGIVVDKRRFG+LYEHPK+W++DGRA TLEGI+LVNPSLGYSVD NYLED+Y +AK Sbjct: 241 NVRDGIVVDKRRFGLLYEHPKSWIDDGRAQTLEGIELVNPSLGYSVDRNYLEDSYNKAKA 300 Query: 301 IGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGG 360 +GGGELLD+LAKHAN++IGMNLRNDRFAG+DFW QN+DPTL LD+LIERCEVAVVGIDGG Sbjct: 301 VGGGELLDFLAKHANIEIGMNLRNDRFAGSDFWQQNSDPTLNLDSLIERCEVAVVGIDGG 360 Query: 361 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQ 420 GLDDLLGLSVVGRCKKTRKWLSWSYGWCH+IALERVKQNASRLRDFEKAGELTIVDLPGQ Sbjct: 361 GLDDLLGLSVVGRCKKTRKWLSWSYGWCHSIALERVKQNASRLRDFEKAGELTIVDLPGQ 420 Query: 421 DVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS 480 DVQELC+IVLKLEKSGLLPE+NAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS Sbjct: 421 DVQELCDIVLKLEKSGLLPEKNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLS 480 Query: 481 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNA 540 GAIKTCERALAGNTL HADQDIM WNI NLKVELKGSALYSTKAAAGKAKVDLAHALFNA Sbjct: 481 GAIKTCERALAGNTLIHADQDIMTWNIGNLKVELKGSALYSTKAAAGKAKVDLAHALFNA 540 Query: 541 ISLISLNPAGRGTVDDFLRRF 561 ISLISLNP+GRGTVDDFL+RF Sbjct: 541 ISLISLNPSGRGTVDDFLKRF 561 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 508 bits (1309), Expect = e-146, Method: Compositional matrix adjust. Identities = 271/562 (48%), Positives = 374/562 (66%), Gaps = 19/562 (3%) Query: 5 EYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPPWVLD 64 E++T+ PDWE RL S+IPPPIFP QAE A+++F L+ D+ G+PT+GECS WV D Sbjct: 2 EWTTACPDWERRLIARESIIPPPIFPDQAEQAVAIFKELRVCDLPGKPTFGECSEQWVFD 61 Query: 65 FVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTI 124 FV IFG+Y+AETG LI+EFF L+ KK++KS+IA+G+MLT +I+ WR+ +LI+APT Sbjct: 62 FVAAIFGAYDAETGKQLIREFFLLISKKNTKSTIAAGIMLTAVILCWREEEEHLILAPTK 121 Query: 125 EVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSKASVL 184 EVA SFKPA+ +RAD +LS+L ++ H RT+T+RVS A LKV+AAD ++V+G K+ + Sbjct: 122 EVADNSFKPAAGMIRADAELSELFHVQDHIRTITHRVSRASLKVVAADTDTVSGKKSGKI 181 Query: 185 LVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRD 244 L+DE G + NA +M EA GG +R EG++I L+TQ+ EPPAGVFK+ L +R +RD Sbjct: 182 LIDEHWVFGKRANAEAMFMEATGGQVSRDEGWVIILTTQSDEPPAGVFKEKLQYYRDVRD 241 Query: 245 GIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGG 304 G +VD++ GVLYE P+ ++ + + NP+LG SV +LED + + G Sbjct: 242 GKIVDRKSLGVLYEFPEEMVKSKAYLDPANYYITNPNLGRSVSAEWLEDQLNKIRTKTDG 301 Query: 305 ELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPT-LTLDTLIERCEVAVVGIDGGGLD 363 ++AKH NV+IGMNLR+DR+AGADFW P +TL LIE+CEV GIDGGGLD Sbjct: 302 SFQQFIAKHLNVEIGMNLRSDRWAGADFWINAGLPERVTLLDLIEQCEVIAAGIDGGGLD 361 Query: 364 DLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQDVQ 423 DLLGLS VGR + R WL+W++ W H LER K+ A L DFEKAG+LTIV G+DV Sbjct: 362 DLLGLSAVGRVRGGRNWLAWAHAWAHPSVLERRKEIAPALHDFEKAGDLTIVSRIGEDVV 421 Query: 424 ELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAI 483 + E V ++E++GLL + GVD AGI AI+D L D +++ + QG++LSGAI Sbjct: 422 QAAEYVARIERAGLLYK---AGVDPAGIGAILDALAAARVPED--KVIGISQGWKLSGAI 476 Query: 484 KTCERALAGNT-------------LTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAK 530 KT ER +A + L H Q ++ W + N +V G+A+ TK +G AK Sbjct: 477 KTTERRIAAASGQRIEGDEAPDGALYHGGQPLLTWAVGNARVVPVGNAVNITKQVSGTAK 536 Query: 531 VDLAHALFNAISLISLNPAGRG 552 +D ALFNA+SL++LNP +G Sbjct: 537 IDPLMALFNAVSLMALNPPAQG 558 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 503 bits (1295), Expect = e-144, Method: Compositional matrix adjust. Identities = 260/546 (47%), Positives = 367/546 (67%), Gaps = 6/546 (1%) Query: 3 VPEYSTSVPDWETRLEQGLSLIPPPIFPAQAELAMSVFSRLKAVDVAGQPTYGECSPPWV 62 +P +ST+ PDW RL++GLS+IP PI+P QA A+++F +L+ VD G PT+GE WV Sbjct: 2 IPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRIVDAPGSPTFGESCAQWV 61 Query: 63 LDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAP 122 D V +FGSY+A+TG IKE F L+PKK+SKS++A+G+M+T L++ WR++A Y I+AP Sbjct: 62 FDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAP 121 Query: 123 TIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSKAS 182 T+EVA +F PA D VR D L L + TH RT+T+RV+ LKV+AAD N+V+G K+ Sbjct: 122 TVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSV 181 Query: 183 VLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSI 242 L+DE G + A MLREA GGLA+RPEGF++ +TQ++EPPAGVF+ L R + Sbjct: 182 GTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDV 241 Query: 243 RDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIG 302 RDG + D V++EHP +E G + +E + +VNP+LGYSVD +L Y +A+ G Sbjct: 242 RDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREAG 301 Query: 303 GGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGGGL 362 +++KHANV+IG+ LR+DR+ GADFW Q ++LD +++R +V VGIDGGGL Sbjct: 302 EEAFRGFMSKHANVEIGLALRSDRWTGADFWEQQGR-RVSLDDILQRADVVTVGIDGGGL 360 Query: 363 DDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQDV 422 DDLLG+ V+GR ++TR+WL W + W H A+ R K ASR +DF G++TIV G D Sbjct: 361 DDLLGMYVIGRDRETREWLGWGHAWAHETAVVRRKSEASRFQDFVACGDMTIVRRVGDDT 420 Query: 423 QELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGA 482 E+ E V ++ ++ LL IG+D +G+ I+D L E GI G ++ + QG++L GA Sbjct: 421 AEVAEYVRRIHEAELLEH---IGIDPSGVGQILDSLA--EAGIPDGIVVGISQGWKLGGA 475 Query: 483 IKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAIS 542 IKT ER LA L H Q +M W + N +VE KG+A+ TK A+G+ K+D ALFNA+S Sbjct: 476 IKTTERKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVS 535 Query: 543 LISLNP 548 L+SLNP Sbjct: 536 LMSLNP 541 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 108 bits (270), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 135/521 (25%), Positives = 216/521 (41%), Gaps = 47/521 (9%) Query: 47 DVAGQPTYGECSPPWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQ 106 ++AGQ E PW IFG + +E + V +K+ KS A+GV + Sbjct: 72 ELAGQKLKLE---PWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIYT 128 Query: 107 LIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVL 166 SA A T+ A+ F PA P L +IS T +LT R G+V Sbjct: 129 FCADGENSAEVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWTDSLT-RPDGSVF 187 Query: 167 KVIAADENSVTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASE 226 +A G ++DE H + + M G+ AR + + ++T S Sbjct: 188 APMAGKPGD--GDSPHCAIIDEYH----EHDTDHMYEAMTMGMGARSQPLTLIITTAGSS 241 Query: 227 PPAGVFKDDLDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMT-LEGIKLVNPSLGYS 285 + + D ++ +I +GI ++R FG++YE L+ G T + + NP+L S Sbjct: 242 LESPCYDKDKEVKEAI-EGITCNERLFGMIYE-----LDVGDDWTDPKNLIKANPNLNVS 295 Query: 286 VDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDT 345 V + L + E AK + ++ + K N+ + F + W D L L+ Sbjct: 296 VKYSDLVELLEVAKQV-PRKVNAFKTKRLNIWVS---GKSAFYNMEQWKAAEDKNLKLED 351 Query: 346 LIERCEVAVVGID-GGGLDDLLGLSVVGR---------CKKTRKWLSWSYGWCHTIALER 395 + VG+D LD G+ + R C K + W+ HT + Sbjct: 352 FAN--DTCNVGLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDT--IHTTDPKL 407 Query: 396 VKQNASRLRDFEKAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIV 455 +K A R + F + G L D D +E+ +L ++ + E I +D AG +A+ Sbjct: 408 LK-TADRYQKFYEMGALEATDGAEADYREILASILDMQGENRIDE---IDIDPAGATALR 463 Query: 456 DMLTGPEYGIDIGRILAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNL--KV 512 L +YG ++ + Q Y +S A+K E ALAG H I+ W ISN+ K Sbjct: 464 HQLE--DYGF---TVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKF 518 Query: 513 ELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGT 553 L ++K+D A ALFNA++ LN + GT Sbjct: 519 IPGSDDLVRPTKGDNQSKIDGATALFNAMTRAMLNESSGGT 559 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 83.6 bits (205), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 127/514 (24%), Positives = 208/514 (40%), Gaps = 50/514 (9%) Query: 47 DVAGQPTYGECSPPWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQ 106 D+ GQ E PW L IFG + KE + V +K+ KS A+G+ + Sbjct: 73 DLKGQKLKAE---PWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYM 129 Query: 107 LIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVL 166 +A A + A+ F PAS + P L N+S LT R G+V Sbjct: 130 FCADGENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLT-REDGSVF 188 Query: 167 KVIAADENSVTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASE 226 + N G S ++DE H T S+M G+ AR + + ++T + Sbjct: 189 APVVG--NPGDGDSPSCAIIDEYHEHPTDILYSTM----TTGMGARSQPLTLIITTAGKD 242 Query: 227 PPAGVFKDDLDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSV 286 + + D ++ + + D ++ ++R FG++YE D IK NP+LG SV Sbjct: 243 IESPCYDKDNEVKQCL-DKMLPNERLFGMIYELDAL---DNWQDPCNLIK-ANPNLGVSV 297 Query: 287 DMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTL 346 L + AK + D KH N+ + F D WA+ D L L Sbjct: 298 FYEDLVEKLHLAKTV-PRMTNDIKTKHLNMWVSGKT---AFFNMDHWAKAEDKNLKLSNF 353 Query: 347 IERCEVAVVGID-GGGLDDLLGLSVVGR---------CKKTRKWLSWSYGWCHTIALERV 396 + E + +G+D LD G+ V R C ++ W+ H+I ++ Sbjct: 354 --KGEESHLGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDT--VHSID-PKI 408 Query: 397 KQNASRLR---DFEKAGELTIVDLPG--QDVQELCEIVLKL-EKSGLLPERNAIGVDQAG 450 + A R + + + AG + D G D +E+ V+ + E+ G+ +I +D G Sbjct: 409 AKTAKRYQKWVNMQWAGGSLLNDTDGAEADYREILASVIDMTERDGV--RIASIPIDPTG 466 Query: 451 ISAIVDMLTGPEYGIDIGRILAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISN 509 +A+ L + + + Q + +S +K E ALAG H I+ W ISN Sbjct: 467 ATALSHELADNGF-----EPINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISN 521 Query: 510 LKVELKGSALYSTKAAAG--KAKVDLAHALFNAI 541 + + + G ++K+D A AL AI Sbjct: 522 VLGTFVPGSDDRVRPTKGDKQSKIDGATALLMAI 555 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 79.3 bits (194), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 97/460 (21%), Positives = 186/460 (40%), Gaps = 35/460 (7%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW L + +FG ++G +E + +P+K+ KS++++GV L A Sbjct: 80 PWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGLYMFACDDEFGAEVYS 139 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 A T + A F+PA + L + I H ++++ GA + + D G+ Sbjct: 140 GATTEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQSMSRPEDGARFEPLIGDPGD--GA 197 Query: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 S L+DE H T ++ + G+ AR + I ++T + ++ Sbjct: 198 SPSCALIDEYHEHQT----DALYQTMQTGMGARRQPLIFGITTAGYNIEGPCYDKRREVI 253 Query: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVDMNYLEDAYERA 298 + +GIV + FG++Y ++DG T + + NP++G SV +YL + +RA Sbjct: 254 EML-EGIVPNDELFGIIYT-----IDDGDDWTDPAVLRKANPNMGISVYSDYLL-SQQRA 306 Query: 299 KNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLI-ERCEVAV--- 354 ++ + KH N+ + D F W + D +LTL+ C +A Sbjct: 307 AINNPRKVGVFKTKHLNIWVAA---KDAFFNLVNWQKCEDRSLTLERFEGHTCILAFDLA 363 Query: 355 VGIDGGGLDDLLGLSVVGR----CKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAG 410 +D + L + G+ C + ++ + + + R A R + + + G Sbjct: 364 RKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRT---AERYQKWVEGG 420 Query: 411 ELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRI 470 +T+ D D +E+ E + + + E +D G + + L ++ I Sbjct: 421 FITVTDGAEIDYREILESAKEANRLNAVEES---PIDPHGATNLSHHLADE----NLNPI 473 Query: 471 LAVPQGYRLSGAIKTCERALAGNTLTHADQDIMDWNISNL 510 + +S +K E A+ H +M W ISN+ Sbjct: 474 TIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNV 513 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 76.3 bits (186), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 101/460 (21%), Positives = 182/460 (39%), Gaps = 34/460 (7%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW L + FG N + +E + +P+K+ KS+I++GV L A Sbjct: 86 PWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGVALYCFACDNEFGAEVYS 145 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 A T + A F+PA + P L++ I + + GA + + N GS Sbjct: 146 GATTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNASNMNRPEDGARFEPLIG--NPGDGS 203 Query: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 +VDE H T ++ML G+ AR + + ++T + ++ Sbjct: 204 SPHCAVVDEYHEHATDALYTTML----TGMGARRQPLMWAITTAGYNIEGPCYDKRREVI 259 Query: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMT-LEGIKLVNPSLGYSVDMNYLEDAYERA 298 + +G V + FG++Y +++G T + ++ NP++G SV +L +RA Sbjct: 260 EML-NGSVPNDELFGIIYT-----VDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRA 313 Query: 299 KNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLI-ERCEVAV--- 354 KN L + K ++ I ++ R+ F W D +LTL+ + C +A Sbjct: 314 KN---NARLANVFKTKHLNIWVSARSAYFNLVS-WQSCEDKSLTLEQFEGQPCILAFDLA 369 Query: 355 VGIDGGGLDDLLGLSVVGRCK----KTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAG 410 +D + L + G+ R W+ Y +++ ++ A R + + + G Sbjct: 370 RKLDMNSMARLYTREIDGKTHYYSVAPRFWV--PYDTVYSVEKNEDRRTAERFQKWVEMG 427 Query: 411 ELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRI 470 LT+ D D + + E K + E +D G + + L D+ + Sbjct: 428 VLTVTDGAEVDYRYILEEAKAANKISPVSES---PIDPFGATGLSHDLADE----DLNPV 480 Query: 471 LAVPQGYRLSGAIKTCERALAGNTLTHADQDIMDWNISNL 510 V +S +K E A+ H IM W I N+ Sbjct: 481 TIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNV 520 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 76.3 bits (186), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 117/513 (22%), Positives = 202/513 (39%), Gaps = 46/513 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + FG N TG +E + VP+K+ KS IA+GV + ++ A Sbjct: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIGMFVLDDEFGAEVYA 144 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 A T + A F+PA V+ P+L +I + + G+ + + N G+ Sbjct: 145 GATTEKQAWEVFRPARLMVKRSPELIVAADIEVNASNMNKPEDGSRFEPLIG--NPGDGA 202 Query: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 S +VDE H + +++++ G+ AR + + ++T + F + Sbjct: 203 SPSCSIVDEYH----EHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI 258 Query: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVDMNYLEDAYERA 298 + +G V D FG ++ +++G T + NP++G SV +YLE +RA Sbjct: 259 EML-EGTVPDDELFGWIWT-----IDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 Query: 299 KNIGGGELLD-YLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLI-ERCEVAV-- 354 I + + KH NV + + W D +LTL+ + C +A+ Sbjct: 313 --IKSARFTNTFKTKHLNVWTSAKA---GYFNLEDWKSCEDRSLTLEQFEGQDCVLALDM 367 Query: 355 -VGIDGGGLDDLLGLSVVGR----CKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKA 409 +D + L + GR C R W+ T+ ++ A R + + Sbjct: 368 ARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVP-----EETVRNTENRRMAERYQAWVNQ 422 Query: 410 GELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGR 469 G L D D +++ E + + + L +D G + + L D G Sbjct: 423 GCLLETDGAEIDYRDILE---EAKDANRLCPVQCTPLDPHGATNLSHQLE------DEGL 473 Query: 470 I-LAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISN-LKVELKGSALYSTKAAA 526 + + Q Y +S +K E A+ H IM W +SN + L G+ Sbjct: 474 TPVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQ 533 Query: 527 GK-AKVDLAHALFNAISLISLNPAGRGTVDDFL 558 G K+D A AL AI L G++D+F Sbjct: 534 GNDNKIDGAVALIMAIGRAMLENHA-GSIDEFF 565 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 73.6 bits (179), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 107/507 (21%), Positives = 214/507 (42%), Gaps = 45/507 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + +FG + ET KE + +K+ K++ SGV + A + Sbjct: 82 PWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHL 141 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRV--SGAVLKVI--AADENS 175 +A ++ A+ F + ++A P+L K + RTL + + + K++ A+D + Sbjct: 142 LANVMKQARILFDESKAMIKASPKLDK------NFRTLRDEIHYDATISKIMPQASDSDK 195 Query: 176 VTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDD 235 + G + + DE H ++ AAR + +I ++T A G D Sbjct: 196 LDGLNTHMGIFDEIHEFKD----YKLISVIKNSRAARLQPLLIYITT-AGYQLDGPLVDM 250 Query: 236 LDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAY 295 ++ R D I+ D+R F L + + ++ NP+LG S++++ +++ + Sbjct: 251 VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKA----NPNLGVSINLDEMKEEW 306 Query: 296 ERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWA-QNADPTLTLDTLIERCEVAV 354 E+AK E D++ K N+ ND + D+ Q + ++L+ L R Sbjct: 307 EKAKRT-PAERGDFITKRFNIFAN----NDEMSFIDYPTLQKNNEIVSLEELEGRP--CT 359 Query: 355 VGIDGGGLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL--RDFEKAGEL 412 +G D +D + K S+ W I +V+ + ++ R++E+ G L Sbjct: 360 IGYDLSETEDFTA-ACATFALDNGKVAVLSHSW---IPKHKVEYSNEKIPYREWEEDGLL 415 Query: 413 TIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILA 472 T+ D P D Q++ ++K+ + ++ + I D+A + L YG + Sbjct: 416 TVQDKPYIDYQDVLNWIIKMNEHYVVEK---ITYDRANAFKLNQELKN--YGFETEE--- 467 Query: 473 VPQG-YRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKV 531 QG LS A+K + + + +M W I+N++++L + + + K+ Sbjct: 468 TRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKI 527 Query: 532 DLAHALFNAISLIS---LNPAGRGTVD 555 D A N + I ++ +G G ++ Sbjct: 528 DGFAAFLNTYTDIMNKVVSDSGEGNIE 554 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 73.2 bits (178), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 107/507 (21%), Positives = 213/507 (42%), Gaps = 45/507 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + +FG + ET KE + +K+ K++ SGV + A + Sbjct: 82 PWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHL 141 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRV--SGAVLKVI--AADENS 175 +A ++ A+ F + ++A P+L + + R L + + + K++ A+D + Sbjct: 142 LANVMKQARILFDESKAMIKASPKLRE------NFRPLRDEIHYDATISKIMPQASDSDK 195 Query: 176 VTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDD 235 + G + + DE H ++ AAR + +I ++T A G D Sbjct: 196 LDGLNTHMGIFDEIHEFKD----YKLISVIKNSRAARLQPLLIYITT-AGYQLDGPLVDM 250 Query: 236 LDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAY 295 ++ R D I+ D+R F L + + ++ NP+LG S+D++ +++ + Sbjct: 251 VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKA----NPNLGVSIDLDEMKEEW 306 Query: 296 ERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWA-QNADPTLTLDTLIERCEVAV 354 E+AK E D++ K N+ ND + D+ Q + ++LD L R Sbjct: 307 EKAKRT-PAERGDFITKRFNIFAN----NDEMSFIDYPTLQKNNEIISLDELEGRP--CT 359 Query: 355 VGIDGGGLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL--RDFEKAGEL 412 +G D +D + K ++ W I +V+ + ++ R++E+ G L Sbjct: 360 IGYDLSETEDFTA-ACATFALDNGKVAVLTHSW---IPKHKVEYSNEKIPYREWEEDGLL 415 Query: 413 TIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILA 472 TI D P D Q++ ++K+ + ++ + I D+A + L YG + Sbjct: 416 TIQDKPYIDYQDVLNWIIKMNEHYVVEK---ITYDRANAFKLNQELKN--YGFETEE--- 467 Query: 473 VPQG-YRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKV 531 QG LS A+K + + + +M W I+N++++L + + + K+ Sbjct: 468 TRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKI 527 Query: 532 DLAHALFNAISLIS---LNPAGRGTVD 555 D A N + I ++ +G G ++ Sbjct: 528 DGFAAFLNTYTDIMNKVVSDSGEGNIE 554 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 73.2 bits (178), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 107/507 (21%), Positives = 213/507 (42%), Gaps = 45/507 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + +FG + ET KE + +K+ K++ SGV + A + Sbjct: 82 PWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHL 141 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRV--SGAVLKVI--AADENS 175 +A ++ A+ F + ++A P+L K + RTL + + + K++ A+D + Sbjct: 142 LANVMKQARILFDESKAMIKASPKLDK------NFRTLRDEIHYDATISKIMPQASDSDK 195 Query: 176 VTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDD 235 + G + + DE H ++ AAR + +I ++T A G D Sbjct: 196 LDGLNTHMGIFDEIHEFKD----YKLISVIKNSRAARLQPLLIYITT-AGYQLDGPLVDM 250 Query: 236 LDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAY 295 ++ R D I+ D+R F L + + ++ NP+LG S++++ +++ + Sbjct: 251 VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKA----NPNLGVSINLDEMKEEW 306 Query: 296 ERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWA-QNADPTLTLDTLIERCEVAV 354 E+AK E D++ K N+ ND + D+ Q + ++L+ L R Sbjct: 307 EKAKRT-PAERGDFITKRFNIFAN----NDEMSFIDYPTLQKNNEIVSLEELEGRP--CT 359 Query: 355 VGIDGGGLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL--RDFEKAGEL 412 +G D +D + K S+ W I +V+ + ++ R++E+ G L Sbjct: 360 IGYDLSETEDFTA-ACATFALDNGKVAVLSHSW---IPKHKVEYSNEKIPYREWEEDGLL 415 Query: 413 TIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILA 472 T+ D P D Q++ ++K+ + ++ + I D+A + L YG + Sbjct: 416 TVQDKPYIDYQDVLNWIIKMNEHYVVEK---ITYDRANAFKLNQELKN--YGFETEE--- 467 Query: 473 VPQG-YRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKV 531 QG LS A+K + + + +M W I+N++++L + + + K+ Sbjct: 468 TRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKI 527 Query: 532 DLAHALFNAISLIS---LNPAGRGTVD 555 D A N + I ++ G G ++ Sbjct: 528 DGFAAFLNTYTDIMNKVVSDKGEGNIE 554 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 73.2 bits (178), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 107/507 (21%), Positives = 213/507 (42%), Gaps = 45/507 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + +FG + ET KE + +K+ K++ SGV + A + Sbjct: 82 PWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHL 141 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRV--SGAVLKVI--AADENS 175 +A ++ A+ F + ++A P+L K + RTL + + + K++ A+D + Sbjct: 142 LANVMKQARILFDESKAMIKASPKLDK------NFRTLRDEIHYDATISKIMPQASDSDK 195 Query: 176 VTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDD 235 + G + + DE H ++ AAR + +I ++T A G D Sbjct: 196 LDGLNTHMGIFDEIHEFKD----YKLISVIKNSRAARLQPLLIYITT-AGYQLDGPLVDM 250 Query: 236 LDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAY 295 ++ R D I+ D+R F L + + ++ NP+LG S++++ +++ + Sbjct: 251 VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKA----NPNLGVSINLDEMKEEW 306 Query: 296 ERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWA-QNADPTLTLDTLIERCEVAV 354 E+AK E D++ K N+ ND + D+ Q + ++L+ L R Sbjct: 307 EKAKRT-PAERGDFITKRFNIFAN----NDEMSFIDYPTLQKNNEIVSLEELEGRP--CT 359 Query: 355 VGIDGGGLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL--RDFEKAGEL 412 +G D +D + K S+ W I +V+ + ++ R++E+ G L Sbjct: 360 IGYDLSETEDFTA-ACATFALDNGKVAVLSHSW---IPKHKVEYSNEKIPYREWEEDGLL 415 Query: 413 TIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILA 472 T+ D P D Q++ ++K+ + ++ + I D+A + L YG + Sbjct: 416 TVQDKPYIDYQDVLNWIIKMNEHYVVEK---ITYDRANAFKLNQELKN--YGFETEE--- 467 Query: 473 VPQG-YRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKV 531 QG LS A+K + + + +M W I+N++++L + + + K+ Sbjct: 468 TRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKI 527 Query: 532 DLAHALFNAISLIS---LNPAGRGTVD 555 D A N + I ++ G G ++ Sbjct: 528 DGFAAFLNTYTDIMNKVVSDKGEGNIE 554 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 106/462 (22%), Positives = 174/462 (37%), Gaps = 41/462 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW L + FG +TG +E + VP+K+ KS IA+GV + A Sbjct: 86 PWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVGIAMFTADDEFGAEVYC 145 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 A T A F+PA V+ P L + + I + + L G+ + I N G+ Sbjct: 146 GATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALNRPEDGSRFEPIIG--NPGDGA 203 Query: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 S + DE H T +ML G+ AR + + ++T + + + Sbjct: 204 SPSCAIEDEYHEHDTNAQYETML----TGMGARRQPLMFVITTAGANIEGPCYDKRRQVI 259 Query: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAK 299 + +G V D FG ++ ED + NP++G SV YLE +RA Sbjct: 260 EML-EGTVPDDELFGWIWTID----EDDDWTDPRVLAKANPNIGISVYQEYLESQQQRA- 313 Query: 300 NIGGGELLD-YLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLI-ERCEVAV--- 354 I + + KH NV + + W D +L+L+ + C +A+ Sbjct: 314 -IKSARFTNTFKTKHLNVWTSAKA---GYFNLEDWKACEDRSLSLEQFEGQDCVLALDMA 369 Query: 355 VGIDGGGLDDLLGLSVVGR----CKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAG 410 +D + L + GR C R W+ T+ ++ A R + + G Sbjct: 370 RKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPED-----TVRNTENRRMAERYQAWVNHG 424 Query: 411 ELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRI 470 L D D +E+ E + + + +D G + + L D G Sbjct: 425 FLIETDGAEIDYREILEEAKEANRRCPV---QCTPLDPHGATNLSHQLA------DEGLT 475 Query: 471 -LAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNL 510 + + Q Y +S +K E A+ H IM W ISN+ Sbjct: 476 PVTIVQNYTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNV 517 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 103/463 (22%), Positives = 180/463 (38%), Gaps = 43/463 (9%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + FG N TG +E + VP+K+ KS A+GV + ++ A Sbjct: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYA 144 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 A T + A F+PA V+ P L I + + G+ + I N G+ Sbjct: 145 GATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIG--NPGDGA 202 Query: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 S +VDE H + +++++ G+ AR + + ++T + F + Sbjct: 203 SPSCAIVDEYH----EHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI 258 Query: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVDMNYLEDAYERA 298 + +G V D FG ++ +++G T + NP++G SV +YLE +RA Sbjct: 259 EML-EGTVPDDELFGWIWT-----IDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 Query: 299 KNIGGGELLD-YLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLI-ERCEVAV-- 354 I + + KH NV + + W D +LTL+ + C +A+ Sbjct: 313 --IKSARFTNTFKTKHLNVWTSAKA---GYFNLEDWKSCEDRSLTLEQFEGQDCVLALDM 367 Query: 355 -VGIDGGGLDDLLGLSVVGR----CKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKA 409 +D + L + GR C R W+ T+ ++ A R + + Sbjct: 368 ARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPED-----TVRNTENRRMAERYQAWVNQ 422 Query: 410 GELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGR 469 G L D D +++ E + + + L +D G + + L D G Sbjct: 423 GCLLETDGAEIDYRDILE---EAKDANRLCPVQCTPLDPHGATNLSHQLA------DEGL 473 Query: 470 I-LAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNL 510 + + Q Y +S +K E A+ H IM W +SN+ Sbjct: 474 TPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNV 516 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 104/462 (22%), Positives = 176/462 (38%), Gaps = 38/462 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW L V FG T +E + +P+K+ KS+I++GV L A Sbjct: 86 PWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAGVALYCFTCDNEFGAEVYS 145 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 A T + A F+PA + P L + I + L GA + + N G+ Sbjct: 146 GATTEKQAWEVFRPARLMCKRTPLLVEAFGIEVNASNLNRPEDGARFEPLIG--NPGDGA 203 Query: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 +VDE H T ++ML G+ AR + + ++T + ++ Sbjct: 204 SPHCAIVDEYHEHPTDALYTTML----TGMGARRQPLMWAITTAGYNIEGPCYDKRREVI 259 Query: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVDMNYLEDAYERA 298 + +G V + FGV+Y +++G T + + NP++G SV ++L +RA Sbjct: 260 EML-NGSVPNNELFGVIYT-----VDEGDDWTDPKVLEKANPNIGVSVYRDFLLSQQQRA 313 Query: 299 KNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLI-ERCEVAV--- 354 N + + KH NV + F W D TLTL+ + C +A Sbjct: 314 INNARHAGV-FKTKHLNVWVAART---AFFNLVSWQNCEDKTLTLELFEGQPCVLAFDLA 369 Query: 355 VGIDGGGLDDLLGLSVVGRCK----KTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAG 410 +D + L + G+ R W+ Y +++ ++ A R + + + G Sbjct: 370 RKLDMNSMARLFTREIDGKTHFYSVAPRFWV--PYDTVYSVEKNEDRRTAERFQKWVEMG 427 Query: 411 ELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISA-IVDMLTGPEYGIDIGR 469 LT+ D D + + E K + E G+S + D P Sbjct: 428 FLTVTDGAEVDYRYILEEAKAANKLNPVSESPIDPFGATGLSHDLADENLNP-------- 479 Query: 470 ILAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNL 510 + + Q Y +S +K E A+ H IM W I N+ Sbjct: 480 -VTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNV 520 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 67.4 bits (163), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 104/505 (20%), Positives = 208/505 (41%), Gaps = 41/505 (8%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + +FG + ET KE + +K+ K++ SGV + A + Sbjct: 82 PWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHL 141 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRV--SGAVLKVI--AADENS 175 +A ++ A+ F + ++A P+L + + R L + + + K++ A+D + Sbjct: 142 LANVMKQARILFDESKAMIKASPKLRE------NFRPLRDEIHYDATISKIMPQASDSDK 195 Query: 176 VTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDD 235 + G + + DE H ++ AAR + +I ++T A G + Sbjct: 196 LDGLNTHMGIFDEIHEFKD----YKLISVIKNSRAARLQPLLIYITT-AGYQLDGPLVNM 250 Query: 236 LDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAY 295 ++ R D I+ D+R F L + + ++ NP+LG S+D++ +++ + Sbjct: 251 VEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKA----NPNLGVSIDLDEMKEEW 306 Query: 296 ERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWA-QNADPTLTLDTLIERCEVAV 354 E+AK E D++ K N+ ND + D+ Q + ++LD L R Sbjct: 307 EKAKRT-PDERGDFITKRFNIFAN----NDEMSFIDYPTLQKNNDIISLDELEGRP--CT 359 Query: 355 VGIDGGGLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEKAGELTI 414 +G D +D + K ++ W +E + + ++E+ G LTI Sbjct: 360 IGYDLSETEDFTA-ACATFALDNGKVAVLTHSWIPKHKVEYSNEKIPYI-EWEEDGLLTI 417 Query: 415 VDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVP 474 D P D Q++ ++K+ + ++ + I D+A + L YG + Sbjct: 418 QDNPYIDYQDVLNWIIKMNEHYVVEK---ITYDRANAFKLNQELKN--YGFETEE---TR 469 Query: 475 QG-YRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDL 533 QG LS A+K + + + +M W I+N++++L + + + K+D Sbjct: 470 QGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDG 529 Query: 534 AHALFNAISLIS---LNPAGRGTVD 555 A N + I ++ G G ++ Sbjct: 530 FAAFLNTYTDIMNKVVSDKGEGNIE 554 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 60.1 bits (144), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/312 (21%), Positives = 128/312 (41%), Gaps = 31/312 (9%) Query: 69 IFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQ 128 IFG TG+ K+ + + +K++KS + SG+ + +A A ++ A+ Sbjct: 86 IFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIGIKLAAFDKYPNAQVYCTATKMKQAR 145 Query: 129 ASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSKASVLLVDE 188 +K A + +P L ++ I H + + ++G + + D ++ G ++DE Sbjct: 146 IVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIMALGRDTGTIDGFDPHGGIIDE 205 Query: 189 CHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVV 248 H T + M++ G + E I ++T +K + + +++ +GIV Sbjct: 206 YHSHKT----NQMVKLLEDGSVNQAESLISIITTAGFNLNGPCYK-EWEYCKNVLEGIVN 260 Query: 249 DKRRFGVLYE--------HPKAWLEDGRAMTLEGIKLVNPSLG-YSVDMNYLEDAYERAK 299 + F + + P WL+ NP + + L+ E +K Sbjct: 261 NDEYFIYIAQMDVEDDIWDPNNWLK------------ANPLVAKLPKGLENLKRFAEESK 308 Query: 300 NIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDG 359 GG +L ++L K N I ND++ G W A LTL+ + A + + Sbjct: 309 QKGGDDLKNFLTKSLN--IWYEFSNDQYIGPSVWKVGA-SKLTLENFKGKTCYAGLDLSS 365 Query: 360 GGLDDLLGLSVV 371 GG DL L+++ Sbjct: 366 GG--DLTSLALI 375 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 104/477 (21%), Positives = 185/477 (38%), Gaps = 46/477 (9%) Query: 80 NLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVR 139 NLI E F + + S KSS+ + +L +I+G + L++A A+ F D VR Sbjct: 91 NLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 Query: 140 ADPQLSKLINISTHTRTLTNRVSG-------AVLKVIAADENSVTGSKASVLLVDECHRL 192 + S + + + + G K D G +S+ + DE H Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 193 GTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRR 252 G + G + + + T G++ ++ F+S + + R Sbjct: 207 G-----EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 Query: 253 FGVLY---EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDY 309 FG+LY H + + M L P +G + + + YE A+ G L + Sbjct: 260 FGLLYMLENHEQVKDKKNWTMAL-------PLIGSVPKWSGVIEEYELAQ--GDPALQN- 309 Query: 310 LAKHANVQIGMNLRNDRFAGADFWAQNADPTLT-LDTLIERCEVAVVGIDGGGLDDLLGL 368 K +G+ +++ ++ D LT + + VGID + DL + Sbjct: 310 --KFLAFNMGLPMQD-----TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAV 362 Query: 369 SVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL-RDFEKAGELTIVDLPGQDVQELCE 427 S V C+ K S + + E++ L +F GEL ++D +V +L Sbjct: 363 SFV--CELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 428 IVLKLE-KSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTC 486 + K+G + IG D A + ++ + D A+ QG+ ++ IK Sbjct: 421 YINDFRTKTGCRLRK--IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLL 478 Query: 487 ERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 + LA N L H +Q +M W ++N V++ S Y K K+D AL A+ + Sbjct: 479 KSKLAENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 102/477 (21%), Positives = 185/477 (38%), Gaps = 46/477 (9%) Query: 80 NLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVR 139 NL+ E F + + S KSS+ + +L +I+G + L++A A+ F D VR Sbjct: 91 NLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 Query: 140 ADPQLSKLINISTHTRTLTNRVSG-------AVLKVIAADENSVTGSKASVLLVDECHRL 192 + S + + + + G K D G +S+ + DE H Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 193 GTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRR 252 G + G + + + T G++ ++ F+S + + R Sbjct: 207 G-----EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 Query: 253 FGVLY---EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDY 309 FG+LY H + + M L P +G + + + YE A+ G L + Sbjct: 260 FGLLYMLENHEQVKDKKNWTMAL-------PLIGDVPKWSGVIEEYELAQ--GDPALQN- 309 Query: 310 LAKHANVQIGMNLRNDRFAGADFWAQNADPTLT-LDTLIERCEVAVVGIDGGGLDDLLGL 368 K +G+ +++ ++ D LT + + VGID + DL + Sbjct: 310 --KFLAFNMGLPMQD-----TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAV 362 Query: 369 SVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL-RDFEKAGELTIVDLPGQDVQELCE 427 S V C+ K S++ + E++ L +F GEL ++D +V +L Sbjct: 363 SFV--CELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 428 IVLKLE-KSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTC 486 + K+G + IG D A + ++ + D A+ QG+ ++ IK Sbjct: 421 YINDFRSKTGCRLRK--IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLL 478 Query: 487 ERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 + L N L H +Q +M W ++N V++ S Y K K+D AL A+ + Sbjct: 479 KSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 56.6 bits (135), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 103/477 (21%), Positives = 184/477 (38%), Gaps = 46/477 (9%) Query: 80 NLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVR 139 NLI E F + + S KSS+ + +L +I+G + L++A A+ F D VR Sbjct: 91 NLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 Query: 140 ADPQLSKLINISTHTRTLTNRVSG-------AVLKVIAADENSVTGSKASVLLVDECHRL 192 + S + + + + G K D G +S+ + DE H Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFASFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 193 GTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRR 252 G + G + + + T G++ ++ F+S + + R Sbjct: 207 G-----EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 Query: 253 FGVLY---EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDY 309 FG+LY H + + M L P +G + + + YE A+ G L + Sbjct: 260 FGLLYMLENHEQVKDKKNWTMAL-------PLIGSVPKWSGVIEEYELAQ--GDPALQN- 309 Query: 310 LAKHANVQIGMNLRNDRFAGADFWAQNADPTLT-LDTLIERCEVAVVGIDGGGLDDLLGL 368 K +G+ +++ ++ D LT + + VGID + DL + Sbjct: 310 --KFLAFNMGLPMQD-----TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAV 362 Query: 369 SVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL-RDFEKAGELTIVDLPGQDVQELCE 427 S V C+ K S + + E++ L +F GEL ++D +V +L Sbjct: 363 SFV--CELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 428 IVLKLE-KSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTC 486 + K+G + IG D A + ++ + D A+ QG+ ++ IK Sbjct: 421 HINDFRTKTGCRLRK--IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLL 478 Query: 487 ERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 + L N L H +Q +M W ++N V++ S Y K K+D AL A+ + Sbjct: 479 KSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 56.6 bits (135), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 103/477 (21%), Positives = 184/477 (38%), Gaps = 46/477 (9%) Query: 80 NLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVR 139 NLI E F + + S KSS+ + +L +I+G + L++A A+ F D VR Sbjct: 91 NLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 Query: 140 ADPQLSKLINISTHTRTLTNRVSG-------AVLKVIAADENSVTGSKASVLLVDECHRL 192 + S + + + + G K D G +S+ + DE H Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 193 GTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRR 252 G + G + + + T G++ ++ F+S + + R Sbjct: 207 G-----EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 Query: 253 FGVLY---EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDY 309 FG+LY H + + M L P +G + + + YE A+ G L + Sbjct: 260 FGLLYMLENHEQVKDKKNWTMAL-------PLIGDVPKWSGVIEEYELAQ--GDPALQN- 309 Query: 310 LAKHANVQIGMNLRNDRFAGADFWAQNADPTLT-LDTLIERCEVAVVGIDGGGLDDLLGL 368 K +G+ +++ ++ D LT + + VGID + DL + Sbjct: 310 --KFLAFNMGLPMQD-----TAYYFTPQDTKLTEFNLSVFNKNRTYVGIDLSLIGDLTAV 362 Query: 369 SVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL-RDFEKAGELTIVDLPGQDVQELCE 427 S V C+ K S + + E++ L +F GEL ++D +V +L Sbjct: 363 SFV--CELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 428 IVLKLE-KSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTC 486 + K+G + IG D A + ++ + D A+ QG+ ++ IK Sbjct: 421 YINDFRSKTGCRLRK--IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLL 478 Query: 487 ERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 + L N L H +Q +M W ++N V++ S Y K K+D AL A+ + Sbjct: 479 KSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 102/477 (21%), Positives = 184/477 (38%), Gaps = 46/477 (9%) Query: 80 NLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVR 139 NL+ E F + + S KSS+ + +L +I+G + L++A A+ F D VR Sbjct: 91 NLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 Query: 140 ADPQLSKLINISTHTRTLTNRVSG-------AVLKVIAADENSVTGSKASVLLVDECHRL 192 + S + + + + G K D G +S+ + DE H Sbjct: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 Query: 193 GTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRR 252 G + G + + + T G++ ++ F+S + + R Sbjct: 207 G-----EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 Query: 253 FGVLY---EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDY 309 FG+LY H + + M L P +G + + + YE A+ G L + Sbjct: 260 FGLLYMLENHEQVKDKKNWTMAL-------PLIGDVPKWSGVIEEYELAQ--GDPALQN- 309 Query: 310 LAKHANVQIGMNLRNDRFAGADFWAQNADPTLT-LDTLIERCEVAVVGIDGGGLDDLLGL 368 K +G+ +++ ++ D LT + + VGID + DL + Sbjct: 310 --KFLAFNMGLPMQD-----TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAV 362 Query: 369 SVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL-RDFEKAGELTIVDLPGQDVQELCE 427 S V C+ K S + + E++ L +F GEL ++D +V +L Sbjct: 363 SFV--CELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 428 IVLKLE-KSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTC 486 + K+G + IG D A + ++ + D A+ QG+ ++ IK Sbjct: 421 YINDFRTKTGCRLRK--IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLL 478 Query: 487 ERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 + L N L H +Q +M W ++N V++ S Y K K+D AL A+ + Sbjct: 479 KSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 65/340 (19%) Query: 61 WVLDFVRYIFGSYNA-ETGHNL--IKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASY 117 W + ++G Y+ E G + I+E + VPKK+ K+ IA+G +L + A Sbjct: 79 WEMFVFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKTIIAAGALLYAMYGELELGADC 138 Query: 118 LIVAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAV------------ 165 A E AQ + +P + ++ L++ I + + VSGA+ Sbjct: 139 YCAASDYEQAQNAAEPIAQAIENSEPLARHTQI---YKGVNGTVSGAMYRYSINGIAYQN 195 Query: 166 -LKVIAADENSVTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQ- 223 KV+ + + G +L DE H +EN M +R + ++ +ST Sbjct: 196 KFKVLTKNTKGLEGKNPYFVLNDELH---AQENM-DMYDNLKSAQISREQPMMLNISTAG 251 Query: 224 --ASEPPAGVFK---------DDLDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTL 272 AS V+K DD LF +I + + + +E K W Sbjct: 252 KGASSVGMRVYKYAKLVLENDDDDSLFVAIWEP----NKNYD--WEDRKVW--------- 296 Query: 273 EGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGAD- 331 K+VNP++G SV M LE +++AK + ++L+KH NV + GAD Sbjct: 297 ---KMVNPNIGVSVTMEQLEIEFKKAKQSAHSK-AEFLSKHLNVFVN---------GADN 343 Query: 332 -FWAQNADPTLTLDTLIERCEVAVVGIDGGGLDDLLGLSV 370 F L D E+ +G+D DL +S+ Sbjct: 344 YFEHDQVQHVLVKDLGDLTGEICYLGLDLSKTTDLTCVSL 383 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 96/474 (20%), Positives = 196/474 (41%), Gaps = 41/474 (8%) Query: 91 KKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLINI 150 +K+ K++ SGV + A ++A ++ A+ F + ++A P+L + Sbjct: 3 RKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRE---- 58 Query: 151 STHTRTLTNRV--SGAVLKVI--AADENSVTGSKASVLLVDECHRLGTKENASSMLREAA 206 + R L + + + K++ A+D + + G + + DE H + ++ Sbjct: 59 --NFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYK----LISVIK 112 Query: 207 GGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRRFGVLYEHPKAWLED 266 AAR + +I ++T A G + ++ R D I+ D+R F L + Sbjct: 113 NSRAARLQPLLIYITT-AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDIN 171 Query: 267 GRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRNDR 326 + ++ NP+LG S+D+ +++ +E+AK E D++ K N+ ND Sbjct: 172 DSSNWIKA----NPNLGVSIDLAEMKEEWEKAKRT-PDERGDFITKRFNIFAN----NDE 222 Query: 327 FAGADF-WAQNADPTLTLDTLIERCEVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSY 385 + D+ Q + ++LD L R +G D +D + K ++ Sbjct: 223 MSFIDYPTLQKNNDIISLDELEGRP--CTIGYDLSETEDFTA-ACATFALDNGKVAVLTH 279 Query: 386 GWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIG 445 W +E + + ++E+ G LTI D P D Q++ ++K+ + ++ + I Sbjct: 280 SWIPKHKVEYSNEKIPYI-EWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEK---IT 335 Query: 446 VDQAGISAIVDMLTGPEYGIDIGRILAVPQG-YRLSGAIKTCERALAGNTLTHADQDIMD 504 D+A + L YG + QG LS A+K + + + +M Sbjct: 336 YDRANAFKLNQELKN--YGFETEE---TRQGALTLSPALKDLKEMFLDGKIIFNNNPLMK 390 Query: 505 WNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLIS---LNPAGRGTVD 555 W I+N++++L + + + K+D A N + I ++ G G ++ Sbjct: 391 WYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIMNKVVSDKGEGNIE 444 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 64 DFVRYIFGSYNAETGHNLIKEFFCL----VPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 D VR +FG K + + + +K+ K+ + +G+ML L+ +S Sbjct: 57 DIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYG 116 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 VA + A +F A+ V+ P LSK + + + + + + + + VIAAD S GS Sbjct: 117 VARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGS 176 Query: 180 KASVLLVDE 188 S DE Sbjct: 177 NPSGCGADE 185 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/448 (19%), Positives = 174/448 (38%), Gaps = 70/448 (15%) Query: 119 IVAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTG 178 +VA + + A+ SFK +++ +P+L + + + + +V K ++ + G Sbjct: 124 VVANSEDQAKVSFKEVFNTIDGNPKLEG--SFDAWKAQIIGKATNSVFKFQTSNAKTKDG 181 Query: 179 SKASVLLVDECHRLGTKENASSMLREAAGGLA--ARPEGFIIKLSTQASEPPAGVFKDDL 236 + ++ DE H ++ ++ +GGL A P F I + AG + Sbjct: 182 GREGCVIYDETHEYEDRQ----IIDVFSGGLGKVANPREFFIGTNGFVR---AGFYDKLE 234 Query: 237 DLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVD------MN 289 + ++I G ++ R F + + L+D + E + + NP+ + +N Sbjct: 235 ERSKAILSGENLNDRMFPFICK-----LDDPAEVKNEAMWEKANPAFEKPLSPRSKRLLN 289 Query: 290 YLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRNDRFAGADFWAQNAD-PTLTLDTLIE 348 + YE N G ++ K N+ ++L D A N + P L Sbjct: 290 KVRKQYEALTNNPSGREA-FMTKRMNLP-EVDLEKVVAPWEDILATNREMPEL------- 340 Query: 349 RCEVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRLRDFEK 408 + + D + D + ++ R W + S+ + + +K ++++EK Sbjct: 341 QNRACIGAFDYASVKDFAAVGLLFRVGDDYIWKTHSFARKGYLDIANLK---PPIKEWEK 397 Query: 409 AGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIG 468 G LTIVD P D + + +++ ++ GI ++ G + +D+ Sbjct: 398 QGLLTIVDEPTIDPRHVVNWFVEMRET-------------HGIQKVI----GDNFRMDLM 440 Query: 469 RILAVPQGYRL----------SGAIKTCERALAGNTLTHADQDIMDWNISNLKVELK--G 516 R L +G+ L S E A + + D +M W +N+ V++K G Sbjct: 441 RPLFEAEGFELEIIRNPRAAHSLLAPRIETLFANHRIVFGDNPLMRWYTNNVAVKIKPDG 500 Query: 517 SALYSTKAAAGKAKVD----LAHALFNA 540 + Y K + K D HAL+ A Sbjct: 501 NKEY-LKKDEHRRKTDGFQAFVHALWRA 527 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 102/546 (18%), Positives = 214/546 (39%), Gaps = 65/546 (11%) Query: 30 PAQAELAMSVFSRLKAVD----VAGQPTYGE--CSPPWVLDFVRYIFGSYNAETGHNLIK 83 P +AE + + + D + G P GE PW + + G Y T K Sbjct: 48 PREAEFVIQIIEKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFK 107 Query: 84 EFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQ 143 E F +P+K+ K+ + + + ++ + + I + ++ + SF+ ++R Q Sbjct: 108 EAFIFIPRKNGKTRLIAALAWALALLERQSGSKIYITSAALQQSLQSFEFILFNLR---Q 164 Query: 144 LSKLINISTHTRTLTNRVSGAV------LKVIAADENSVTGSKASVLLVDECHRLGTKEN 197 + + N N +SG ++ +AA+ + +V + DE H T + Sbjct: 165 MGEEQNFRILNNNQENSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQ 224 Query: 198 ASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRRFGVLY 257 ++++EA + A +I ++T + + ++ L + I D V D+ F + Sbjct: 225 -YNIIKEA---MKAYTNKLMIGITTAGDDMTSFCYQ-RLQYCKKILDETVTDEAYFVFIC 279 Query: 258 EHPKAWLEDGRAMTLEGIKL--VNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHAN 315 + + E+G I+ NP+ G ++ + + + +A+N + D+LAK N Sbjct: 280 KADED--ENGEVDYTNPIEHEKANPNYGVTIRPDDIMNDALQAQN-DPQQRKDFLAKSLN 336 Query: 316 VQ---IGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGGG------LDDLL 366 + + D F +D D IE ++A +GID G L DL Sbjct: 337 IYTSPMKAYFNIDEFKKSD---------RKYDWTIE--QLAKLGIDWFGGADLSKLHDLT 385 Query: 367 GLSVVGRCKKTRKWLSWSYGWCHTIALER-VKQNASRLRDFEKAGELTIVDLPGQDVQEL 425 ++ G ++ ++ W +A R +++ L + G LT+ + P + ++ Sbjct: 386 AAALYGNYNGVD--IAITHAWFPIVAATRKAEEDNIPLFGWRDDGWLTMTNTPTVNFSDV 443 Query: 426 CEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGR----ILAVPQ-GYRLS 480 + + G + Q G D G E+ + + + I+ PQ Y+ S Sbjct: 444 VKWFETMRAKGF-------KIKQVGF----DRKFGREFFMAMKQKRFNIVDQPQYYYKKS 492 Query: 481 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHA-LFN 539 + E+ + + ++ + N+ K + + K ++D+ A +F Sbjct: 493 EGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHAIEKTDDMIQFEKIEDKHRIDIFDATVFA 552 Query: 540 AISLIS 545 AI ++ Sbjct: 553 AIRMLE 558 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 102/546 (18%), Positives = 214/546 (39%), Gaps = 65/546 (11%) Query: 30 PAQAELAMSVFSRLKAVD----VAGQPTYGE--CSPPWVLDFVRYIFGSYNAETGHNLIK 83 P +AE + + + D + G P GE PW + + G Y T K Sbjct: 48 PREAEFVIQIIEKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFK 107 Query: 84 EFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQ 143 E F +P+K+ K+ + + + ++ + + I + ++ + SF+ ++R Q Sbjct: 108 EAFIFIPRKNGKTRLIAALAWALALLERQSGSKIYITSAALQQSLQSFEFILFNLR---Q 164 Query: 144 LSKLINISTHTRTLTNRVSGAV------LKVIAADENSVTGSKASVLLVDECHRLGTKEN 197 + + N N +SG ++ +AA+ + +V + DE H T + Sbjct: 165 MGEEQNFRILNNNQENSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQ 224 Query: 198 ASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRRFGVLY 257 ++++EA + A +I ++T + + ++ L + I D V D+ F + Sbjct: 225 -YNIIKEA---MKAYTNKLMIGITTAGDDMTSFCYQ-RLQYCKKILDETVTDEAYFVFIC 279 Query: 258 EHPKAWLEDGRAMTLEGIKL--VNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHAN 315 + + E+G I+ NP+ G ++ + + + +A+N + D+LAK N Sbjct: 280 KADED--ENGEVDYTNPIEHEKANPNYGVTIRPDDIMNDALQAQN-DPQQRKDFLAKSLN 336 Query: 316 VQ---IGMNLRNDRFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGGG------LDDLL 366 + + D F +D D IE ++A +GID G L DL Sbjct: 337 IYTSPMKAYFNIDEFKKSD---------RKYDWTIE--QLAKLGIDWFGGADLSKLHDLT 385 Query: 367 GLSVVGRCKKTRKWLSWSYGWCHTIALER-VKQNASRLRDFEKAGELTIVDLPGQDVQEL 425 ++ G ++ ++ W +A R +++ L + G LT+ + P + ++ Sbjct: 386 AAALYGNYNGVD--IAITHAWFPIVAATRKAEEDNIPLFGWRDDGWLTMTNTPTVNFSDV 443 Query: 426 CEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGR----ILAVPQ-GYRLS 480 + + G + Q G D G E+ + + + I+ PQ Y+ S Sbjct: 444 VKWFETMRAKGF-------KIKQVGF----DRKFGREFFMAMKQKRFNIVDQPQYYYKKS 492 Query: 481 GAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHA-LFN 539 + E+ + + ++ + N+ K + + K ++D+ A +F Sbjct: 493 EGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHAIEKTDDMIQFEKIEDKHRIDIFDATVFA 552 Query: 540 AISLIS 545 AI ++ Sbjct: 553 AIRMLE 558 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 87/181 (48%), Gaps = 24/181 (13%) Query: 66 VRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWR--KSASYLIVAPT 123 + ++F Y +ET N+ K+ ++ + K+ + SG+ + LI + K+ + +VA + Sbjct: 72 ISFVFLRY-SETNRNVYKKILIMMGRGGGKNGLISGI-IAYLISPFHGIKNYNVSLVANS 129 Query: 124 IEVAQASFKPASDSVRADPQLSKL-INISTHTRTLTNRVSGAVLKVIAADENSVTGSKAS 182 + A+ SF ++V ++P+L ++ N + +++ + +V++ ++ N+ G + Sbjct: 130 EDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIH---TNSVMRFRTSNGNTKDGLRDG 186 Query: 183 VLLVDECHR-------------LGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPA 229 +++ DE H+ LG +NA G + EGFI + +A + + Sbjct: 187 MVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVR---EGFIDSMKDKAKKVLS 243 Query: 230 G 230 G Sbjct: 244 G 244 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 30/222 (13%) Query: 349 RCEVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWS----------YGWCHTIALERVKQ 398 R EV + G+D + D + ++ + + WLS S YG+ K+ Sbjct: 342 RGEVCIGGLDYAAIRDFAAVGLLFKDRDDYVWLSHSFVRKEFVDTYYGYSKRKDSINGKR 401 Query: 399 NASRLRDFEKAGELTIVDLPGQDVQELCEIVLKL-EKSGLLPERNAIGVDQAGISAIVDM 457 + ++ +E+ G LT++D + Q + + +K+ ++ G +R I D + + + Sbjct: 402 QFAPIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQR--IVSDNFRMEILKPL 459 Query: 458 LTGPEYGIDIGRILAVPQGYRLS-----GAIKT-----CERALAGNTLTHADQDIMDWNI 507 + + + P GY++ AI + E A A + + D+M W Sbjct: 460 FEREGFEVLSKNTFSAPPGYQIEIVRNPRAIDSLLAPRIETAFANHRVVFGHNDMMRWYT 519 Query: 508 SNLKVELK--GSALYSTKAAAGKAKVD----LAHALFNAISL 543 N+ LK G+ Y K + K D +A++ A +L Sbjct: 520 HNVLRRLKSDGNVEY-VKKEDTRRKTDGFKAFEYAMYRADTL 560 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/266 (22%), Positives = 103/266 (38%), Gaps = 19/266 (7%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW + IFG +TG +E + +P+K+ KS+ + + A Sbjct: 81 PWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARGIYLFAADGESGAEVYS 140 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADE----NS 175 A T + A F+PA L I + N V++ ++ E N Sbjct: 141 GATTEKQAFEVFRPAWMMAHKLENLRNRFGIEL-SGNQKNPGPMFVMEDMSKFETVIGNP 199 Query: 176 VTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDD 235 G+ LVDE H T +M G+ AR + + ++T S + Sbjct: 200 GDGASPHAALVDEYHEHDTDALVDTM----QTGMGAREQPLLSIITTAGSNLGGPCHEKR 255 Query: 236 LDLFRSIRDGIVVDKRRFGVLY--EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLED 293 D+ R I +G +D+ FG++Y + W D A ++ NP+ G SV ++L Sbjct: 256 RDVIR-ILEGQTIDETIFGIIYTIDEDDPW--DDPASLIKA----NPNYGVSVFPDFLLA 308 Query: 294 AYERAKNIGGGELLDYLAKHANVQIG 319 ++AK + + KH N +G Sbjct: 309 QLQQAKRSASKQNA-FRTKHLNQWVG 333 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 25/220 (11%) Query: 28 IFPAQAELAMSVFSRLKAVDVAGQPTYGECSPPWVLDFVRYIFGSY----NAETGHNLIK 83 I+ ++ + FS L +G+P E SP + ++I S N ET K Sbjct: 57 IYDSEQAKKIVEFSTLLKDVTSGEPF--EASP-----YQKFILASVQGWRNPETKGMRFK 109 Query: 84 EFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQA---------SFKPA 134 F + + + K+ + + L + G K L V+ +I++A ++ Sbjct: 110 TIFISMARTNGKTQVLATYALYNFLFGSPKINRQLAVS-SIDIAHTHNLFNYMRFNWIQL 168 Query: 135 SDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGSKASVLLVDECHRLGT 194 D V +L+K ++I+ +++ + + AV+K ++A + + +VDE H G Sbjct: 169 KDGVFK--KLAKALDINDNSQVMEIKKQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQ 226 Query: 195 KENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKD 234 K+ + G+ P + +ST +P +F+D Sbjct: 227 KQ--RDFISSMTSGMVNNPLAQMFFISTAGVDPTVPMFED 264 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 40.4 bits (93), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/181 (20%), Positives = 87/181 (48%), Gaps = 24/181 (13%) Query: 66 VRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWR--KSASYLIVAPT 123 + ++F Y +ET N+ K+ ++ + K+ + SG+ + L+ + K+ + +VA + Sbjct: 72 ISFVFLRY-SETNRNVYKKILIMMGRGGGKNGLISGI-IAYLLSPFHGIKNYNVSLVANS 129 Query: 124 IEVAQASFKPASDSVRADPQLSKL-INISTHTRTLTNRVSGAVLKVIAADENSVTGSKAS 182 + A+ SF ++V ++P+L ++ N + +++ + +V++ ++ N+ G + Sbjct: 130 EDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIH---TNSVMRFRTSNGNTKDGLRDG 186 Query: 183 VLLVDECHR-------------LGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPA 229 +++ DE H+ LG +NA G + EGFI + +A + + Sbjct: 187 MVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVR---EGFIDSMKDKAKKVLS 243 Query: 230 G 230 G Sbjct: 244 G 244 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 30/222 (13%) Query: 349 RCEVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWS----------YGWCHTIALERVKQ 398 R EV + G+D + D + ++ + WLS S YG+ K+ Sbjct: 342 RGEVCIGGLDYAAIRDFAAVGLLFKNGADYVWLSHSFVRKEFVDTYYGYSKRKDSINGKR 401 Query: 399 NASRLRDFEKAGELTIVDLPGQDVQELCEIVLKL-EKSGLLPERNAIGVDQAGISAIVDM 457 + ++ +E+ G LT++D + Q + + +K+ ++ G +R I D + + + Sbjct: 402 QFAPIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQR--IVSDNFRMEILKPL 459 Query: 458 LTGPEYGIDIGRILAVPQGYRLS-----GAIKT-----CERALAGNTLTHADQDIMDWNI 507 + + P GY++ AI + E A A + + D+M W Sbjct: 460 FEREGFEVLSKNTFTAPPGYQIEIVRNPRAIDSLLAPRIETAFANHKVIFGHNDMMRWYT 519 Query: 508 SNLKVELK--GSALYSTKAAAGKAKVD----LAHALFNAISL 543 N+ LK G+ Y K + K D +A++ A +L Sbjct: 520 HNILRRLKSDGNVEY-VKKEDTRRKTDGFKAFEYAMYRADTL 560 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 40.0 bits (92), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 21/208 (10%) Query: 65 FVRYIFGS---YNAETGHNL--IKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 F ++I G+ + +T H+L ++ V +K+ K+ + +G++L + + G S S + Sbjct: 88 FQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQL 147 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKL----INISTHTRT----LTNRVSGAVLKVIAA 171 + QA K A D A QLS L +++ T+ L N + ++ ++ Sbjct: 148 FCTANDRTQA--KIAWDM--AKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSR 203 Query: 172 DENSVTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGV 231 D +V G + V ++DE +K N L E+ G P FI+ +ST + + Sbjct: 204 DTGAVDGFEPYVGVLDEF--AASKTNEMLELLESGQGQLDNP--FILIISTAGMDLNVPM 259 Query: 232 FKDDLDLFRSIRDGIVVDKRRFGVLYEH 259 + I DG + D+ FG + E Sbjct: 260 HTIEYPYITKILDGEITDEGYFGYVAEQ 287 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 45/96 (46%) Query: 93 SSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLINIST 152 + + + +G+ML L+ +S VA + A +F A+ V+ P LSK + + Sbjct: 421 THNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVD 480 Query: 153 HTRTLTNRVSGAVLKVIAADENSVTGSKASVLLVDE 188 + + + + + + VIAAD S GS S DE Sbjct: 481 YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADE 516 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 43/214 (20%) Query: 351 EVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSY---GWCHTIALERVKQNASRLRDFE 407 ++ + G+D + D + ++ R WL S+ G+ + LE ++++E Sbjct: 349 QMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLE------PPIKEWE 402 Query: 408 KAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDI 467 K G LTIVD DV E+ IV L R G+++ + Y DI Sbjct: 403 KMGLLTIVD---DDVIEIEYIV-----DWFLKAREKYGLEK---------VIADNYRTDI 445 Query: 468 GRILAVPQGYRLS-----GAIK-----TCERALAGNTLTHADQDIMDWNISNLKVELK-- 515 R G +L AI + A + + + D +M W +N+ V++K Sbjct: 446 VRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPD 505 Query: 516 GSALYSTKAAAGKAKVD----LAHALFNAISLIS 545 G+ Y K + K D HAL+ A ++ Sbjct: 506 GNKEY-IKKDENRRKTDGFMAFVHALYRADDIVD 538 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 43/214 (20%) Query: 351 EVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSY---GWCHTIALERVKQNASRLRDFE 407 ++ + G+D + D + ++ R WL S+ G+ + LE ++++E Sbjct: 349 QMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLE------PPIKEWE 402 Query: 408 KAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDI 467 K G LTIVD DV E+ IV L R G+++ + Y DI Sbjct: 403 KMGLLTIVD---DDVIEIEYIV-----DWFLKAREKYGLEK---------VIADNYRTDI 445 Query: 468 GRILAVPQGYRLS-----GAIK-----TCERALAGNTLTHADQDIMDWNISNLKVELK-- 515 R G +L AI + A + + + D +M W +N+ V++K Sbjct: 446 VRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPD 505 Query: 516 GSALYSTKAAAGKAKVD----LAHALFNAISLIS 545 G+ Y K + K D HAL+ A ++ Sbjct: 506 GNKEY-IKKDENRRKTDGFMAFVHALYRADDIVD 538 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 43/214 (20%) Query: 351 EVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSY---GWCHTIALERVKQNASRLRDFE 407 ++ + G+D + D + ++ R WL S+ G+ + LE ++++E Sbjct: 349 QMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLE------PPIKEWE 402 Query: 408 KAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDI 467 K G LTIVD DV E+ IV L R G+++ + Y DI Sbjct: 403 KMGLLTIVD---DDVIEIEYIV-----DWFLKAREKYGLEK---------VIADNYRTDI 445 Query: 468 GRILAVPQGYRLS-----GAIK-----TCERALAGNTLTHADQDIMDWNISNLKVELK-- 515 R G +L AI + A + + + D +M W +N+ V++K Sbjct: 446 VRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKIKPD 505 Query: 516 GSALYSTKAAAGKAKVD----LAHALFNAISLIS 545 G+ Y K + K D HAL+ A ++ Sbjct: 506 GNKEYIKKDEV-RRKTDGFMAFVHALYRADDIVD 538 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 102/522 (19%), Positives = 199/522 (38%), Gaps = 62/522 (11%) Query: 39 VFSRLKAVDVAGQPTYGECSPPWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSI 98 +F K + +AGQP E + + L V IFG E G ++ + + +K++KS + Sbjct: 64 MFKHNKGI-LAGQPI--ELTD-FQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQL 119 Query: 99 ASGVMLTQ----------LIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLI 148 + + + I GW + S ++ + QA L K Sbjct: 120 LALIASYECFLSPEQSEVYIAGWGREQSSIVYNEVLAQVQAC------------DLLKGK 167 Query: 149 NISTHTRTLTNRVSGAVLKVIAADENSV-TGSKASVLLVDECHRLGTKENASSMLREAAG 207 ++ R + ++ SG++++ ++ + G S+ ++DE H T E ++ Sbjct: 168 YTDSYGR-IRHKKSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLV----S 222 Query: 208 GLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRRFGVLY-EHPKAWLED 266 G+ AR I+ ++T + + + + + I G ++ + V+ E K +D Sbjct: 223 GMVARQNPLIVIITTAGFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDK---DD 279 Query: 267 GRAMTLEGIKLVNPSLG-YSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRND 325 +K NP + Y MN+L + A ++ ++ +L K N+ I ++ +++ Sbjct: 280 DIKDERNWVK-ANPIVATYEEGMNFLRSELQTALDVPE-KMRSFLTK--NMNIWVDQKDN 335 Query: 326 RFAGADFWAQNADPTLTLDTLIERCEVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSY 385 + D W A +D + C VGID DL +S + R Y Sbjct: 336 GYLPLDKWRACAIKE-QIDLDVRDC---YVGIDLSMRIDLTSVSGIVPMDDGR-----FY 386 Query: 386 GWCHTIALERVKQNASRLRD-----FEKAGELTIVDLPGQDVQELCEIVLKLEKSGLLPE 440 W H+ E R + K G +T+ D Q + + +L + + Sbjct: 387 VWSHSFIPEDTLAEKRRTDKVPYDLWVKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNI 446 Query: 441 RNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYR-LSGAIKTCERALAGNTLTHAD 499 + I D + + Y + + + QG+R LS K + + H D Sbjct: 447 KE-ICYDPYNATHFAHEMEAEGYVM-----VEIRQGFRTLSEPTKRFRELVLSGKILHDD 500 Query: 500 QDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAI 541 +++W I N V+ + ++D AL NA+ Sbjct: 501 NPVLNWAIGNAVVKQDHNENIMLDKDKSTGRIDPIAALINAM 542 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 32.0 bits (71), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 475 QGYRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLA 534 + +S I + +R L L + + +IM ++ N +V+ K + + ++K+DL Sbjct: 428 NAFTVSQHIMSLQRLLKTRGLLY-NSEIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLV 486 Query: 535 HALFNAISLISLNPAGRGTVDDFLRR 560 A NA+++ LN R V+ + R Sbjct: 487 DAAVNALAVYELN---RDYVEKYFER 509 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 30.0 bits (66), Expect = 0.069, Method: Compositional matrix adjust. Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW +FG + T E +P+K K++ A+ + + I+ + I Sbjct: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYI 143 Query: 120 VAPTIEVAQASFKPAS---DSVRADPQLSKLI-NISTHTRTLTNRVSGAVLKVIAADENS 175 VA +++ Q SF + + +R D + ++ N H+ + + IA ++ Sbjct: 144 VANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDK 203 Query: 176 VTGSKASVLLVDECH---RLGTK-----ENASSMLRE-------AAGGLAARPEGFIIKL 220 + + L++DE H + G K +N+ R AG +A GF+ + Sbjct: 204 LDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIA---NGFLAQR 260 Query: 221 STQASEPPAGVFKD 234 T + +G KD Sbjct: 261 VTTLKKVLSGTIKD 274 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 26.6 bits (57), Expect = 0.89, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 32/164 (19%) Query: 402 RLRDFEKAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGP 461 RL F+K L + D P + I K K+GL+ AGI ++ L GP Sbjct: 28 RLDTFQKEFILAVYDNPAGTDMAILSIARKNGKTGLI----------AGI--LLAHLVGP 75 Query: 462 EYGIDIGRILAVPQGYRLSGAIKTCERALAGN------TLTHADQDIMDWNISNLK-VEL 514 E AV +SGA+ + A+ N L Q+I+ S K + L Sbjct: 76 E---------AVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIVHITPSGKKLIGL 126 Query: 515 KGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDFL 558 + Y +A GK H L ++++ RG DDF+ Sbjct: 127 PCNVEYKALSAEGKT----THGLSPILAILDETGQVRGPQDDFI 166 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 266 DGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRND 325 DGR E + V P V + + +AK I G EL + + G R Sbjct: 158 DGRMDEAEYVAEVRPR----VSLTKVGKQSFKAKEIDGTELT--FGVYPDPASGFPAR-- 209 Query: 326 RFAGADFWAQNADPTLTLDTLIERCEVAVVGID 358 R G FWA++ P L E VA +G D Sbjct: 210 RIPGGPFWAESGGPVLW--PTPEVAPVATLGTD 240 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 266 DGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRND 325 DGR E + V P V + + +AK I G EL + + G R Sbjct: 158 DGRMDEAEYVAEVRPR----VSLTKVGKQSFKAKEIDGTELT--FGVYPDPASGFPAR-- 209 Query: 326 RFAGADFWAQNADPTLTLDTLIERCEVAVVGID 358 R G FWA++ P L E VA +G D Sbjct: 210 RIPGGPFWAESGGPVLW--PTPEVAPVATLGTD 240 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 32/164 (19%) Query: 402 RLRDFEKAGELTIVDLPGQDVQELCEIVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGP 461 RL F+K L + D P + I K K+GL+ AGI ++ L GP Sbjct: 28 RLDPFQKDFILAVYDNPAGTDMAILSIARKNGKTGLI----------AGI--LLAHLVGP 75 Query: 462 EYGIDIGRILAVPQGYRLSGAIKTCERALAGN------TLTHADQDIMDWNISNLK-VEL 514 E AV +SGA+ + A+ N L Q+I+ S K + L Sbjct: 76 E---------AVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIVHITPSGKKLIGL 126 Query: 515 KGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDFL 558 + Y +A GK H L ++++ RG DDF+ Sbjct: 127 PCNVEYKALSAEGKT----THGLSPILAILDETGQVRGPQDDFI 166 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 79/425 (18%), Positives = 151/425 (35%), Gaps = 72/425 (16%) Query: 149 NISTHTRTLTNRVSGAVLKVIAADENSVTGSKASVLLVDECHRLGTKENASSMLREAAGG 208 ++S + R V++ I+ + + + DE + ++E S ++ G Sbjct: 206 DLSLQADKIIMRNHNNVIRPISHEAGQYDSYHFTTAIFDEIGEVKSREKISKIV----SG 261 Query: 209 LAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRRFGVLYEHPKAWLEDGR 268 P +++ST +P +D+ L +++ + D + L W D Sbjct: 262 QVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQAMEQDFLRDADTYLCL-----IWSNDS- 315 Query: 269 AMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGM--NLRNDR 326 L++ Y+ + LLD ++H N+ G+ ND Sbjct: 316 ----------------------LDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDV 353 Query: 327 FAGA--DFWAQNADPTLT--LDTLIERCEV--------------AVVGIDGGGLDDLLGL 368 GA DF +N + L+ +D+ + +V VG+D D + Sbjct: 354 LTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIYGQRCYVGVDYSMSSDNTAV 413 Query: 369 SVVGRCKKTRKWLSWSYGWCHTIALE-------RVKQNASRLRDFEKAGELTIVD----L 417 + V W I + + KQ+ R+ E G TI L Sbjct: 414 AFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYRELETKGFCTITSHQQGL 473 Query: 418 PGQDVQELCE-IVLKLEKSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQG 476 D E E IV +E++ L + G D G++ ++ ML G ++ I + Sbjct: 474 INDD--EFYEWIVNYIEENSL--DVLFFGYDAMGVTKVIQMLLNNT-GFNLQPIRQ--RT 526 Query: 477 YRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHA 536 L+ K ++ T++ D IM+ + N + + K A K+D+ A Sbjct: 527 GELAKPTKFLQKIFVEGTISRLDDKIMEKALLNAVLREDSVGIQVDKRKA-TLKIDVVDA 585 Query: 537 LFNAI 541 + +A+ Sbjct: 586 IIDAL 590 >gi|13482|lcl|protein:vir:9757 Length: 471 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795519;genbank:gi:28876285;genbank:GeneID :1257826 Length = 471 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 PW ++ + I E G + +++ +P+++ K+ + V L L K L Sbjct: 43 PWQVNMLIPIMAI--DENGLWVHQKYGYAIPRRNGKTEVVYIVELWAL----HKGLKILH 96 Query: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTR---TLTNRVSGAVLKVIAADENSV 176 A I + ASF+ + + IS + + + SGAV++ N Sbjct: 97 TAHRISTSHASFEKVKKYLEMSGYVDGEDFISNKAKGQERIEFKASGAVIQFRTRTSNGG 156 Query: 177 TGSKASVLLVDECHRLGTKENAS 199 G +L++DE +++ ++ Sbjct: 157 LGEGFDLLIIDEAQEYTSEQESA 179 >gi|2942|lcl|protein:vir:105471 Length: 156 # NCBI annotation: putative phage core tail protein # Family: family:all:668 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529881;genbank:gi:90592621;genbank:GeneID :3974535 Length = 156 Score = 24.3 bits (51), Expect = 3.6, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 150 ISTHTRTLTNRVSGAVLKVIAADE 173 IST TLT +V+G ++K+I D+ Sbjct: 14 ISTKDATLTIKVNGNIIKMIECDK 37 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 471 LAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKA 529 + +PQ LS K + + H ++ W ++N V++ K Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKN 526 Query: 530 KVDLAHALFNAISLISLNPAGRGTVDDFLRR 560 ++D A A+ NA S + R V +F + Sbjct: 527 RIDPAAAVLNAFSRAMYGASVRFDVSEFANK 557 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 538 FNAISLISLNPAGRGTVDDF 557 F A+ +IS+ PAGR V D Sbjct: 453 FVAVPIISIEPAGRAEVFDI 472 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 501 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 557 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 114 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 166 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 501 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 557 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 114 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 166 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 501 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 557 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 114 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 166 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 501 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 557 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 114 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 166 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 501 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 557 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 92 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 144 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 23.1 bits (48), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 471 LAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKA 529 + +PQ LS K + + H ++ W ++N V++ K Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKN 526 Query: 530 KVDLAHALFNAISLISLNPAGRGTVDDFLRR 560 ++D A A+ NA + + R V +F + Sbjct: 527 RIDPAAAVLNAFARAMYGASVRFDVSEFANK 557 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 23.1 bits (48), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 471 LAVPQGY-RLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKA 529 + +PQ LS K + + H ++ W ++N V++ K Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKN 526 Query: 530 KVDLAHALFNAISLISLNPAGRGTVDDFLRR 560 ++D A A+ NA + + R V +F + Sbjct: 527 RIDPAAAVLNAFARAMYGASVRFDVSEFANK 557 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.135 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 237,226 Number of Sequences: 514 Number of extensions: 10248 Number of successful extensions: 140 Number of sequences better than 100.0: 67 Number of HSP's better than 100.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 83 length of query: 561 length of database: 206,069 effective HSP length: 76 effective length of query: 485 effective length of database: 167,005 effective search space: 80997425 effective search space used: 80997425 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)