Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P-GSP1 | Genbank acc : NC_020878

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	42	lcl\|NC_020878.1_cdsid_YP_007677710.1	HHsearch (proba=100.00%)
Portal	46	lcl\|NC_020878.1_cdsid_YP_007677714.1	HHsearch (proba=100.00%)
TermL	17	lcl\|NC_020878.1_cdsid_YP_007677685.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	41	lcl\|NC_020878.1_cdsid_YP_007677709.1	HHsearch (proba=100.00%)
Hc3	40	lcl\|NC_020878.1_cdsid_YP_007677708.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100057 protein:vir:78739 protein:vir:1781	P-SSP7 Syn5 P60	71 % 43 % 36 %
Portal	protein:vir:100039 protein:vir:78696 protein:vir:1785	P-SSP7 Syn5 P60	74 % 50 % 50 %
TermL	protein:vir:100065 protein:vir:78718 protein:vir:1554	P-SSP7 Syn5 phiYeO3-12	85 % 61 % 44 %
Ad3	protein:vir:100027 protein:vir:1780 protein:vir:78741	P-SSP7 P60 Syn5	61 % 39 % 35 %
Hc3	protein:vir:100022 protein:vir:78703 protein:vir:1778	P-SSP7 Syn5 P60	57 % 29 % 27 %