Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 96 lcl|NC_020855.1_cdsid_YP_007675133.1 HHsearch (proba=100.00%)
Portal 100 lcl|NC_020855.1_cdsid_YP_007675137.1 HHsearch (proba=100.00%)
TermL 104 lcl|NC_020855.1_cdsid_YP_007675141.1 Blast (e-value=0)
MTP 101 lcl|NC_020855.1_cdsid_YP_007675138.1 Blast (e-value=5e-44)
Sheath 102 lcl|NC_020855.1_cdsid_YP_007675139.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 119 lcl|NC_020855.1_cdsid_YP_007675156.1 HHsearch (proba=100.00%)
Hc2 118 lcl|NC_020855.1_cdsid_YP_007675155.1 HHsearch (proba=100.00%)
Tc2 117 lcl|NC_020855.1_cdsid_YP_007675154.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103181
protein:vir:104915
protein:vir:104549
Syn9
P-SSM2
P-SSM4
72 %
71 %
71 %
Portal protein:vir:103177
protein:vir:104500
protein:vir:106999
Syn9
P-SSM4
S-PM2
64 %
63 %
58 %
TermL protein:vir:103169
protein:vir:104536
protein:vir:106989
Syn9
P-SSM4
S-PM2
78 %
76 %
68 %
MTP protein:vir:103176
protein:vir:104504
protein:vir:104771
Syn9
P-SSM4
P-SSM2
50 %
49 %
37 %
Sheath protein:vir:104477
protein:vir:103168
protein:vir:104858
P-SSM4
Syn9
P-SSM2
49 %
44 %
39 %
Ad2 protein:vir:104694
protein:vir:106985
protein:vir:103004
P-SSM2
S-PM2
Syn9
44 %
43 %
41 %
Hc2 protein:vir:104476
protein:vir:103005
protein:vir:106986
P-SSM4
Syn9
S-PM2
55 %
53 %
48 %
Tc2 protein:vir:103006
protein:vir:104479
protein:vir:106987
Syn9
P-SSM4
S-PM2
60 %
53 %
49 %