Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P-RSM6 | Genbank acc : NC_020855

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 221

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	96	lcl\|NC_020855.1_cdsid_YP_007675133.1	HHsearch (proba=100.00%)
Portal	100	lcl\|NC_020855.1_cdsid_YP_007675137.1	HHsearch (proba=100.00%)
TermL	104	lcl\|NC_020855.1_cdsid_YP_007675141.1	Blast (e-value=0)
MTP	101	lcl\|NC_020855.1_cdsid_YP_007675138.1	Blast (e-value=5e-44)
Sheath	102	lcl\|NC_020855.1_cdsid_YP_007675139.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	119	lcl\|NC_020855.1_cdsid_YP_007675156.1	HHsearch (proba=100.00%)
Hc2	118	lcl\|NC_020855.1_cdsid_YP_007675155.1	HHsearch (proba=100.00%)
Tc2	117	lcl\|NC_020855.1_cdsid_YP_007675154.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104915 protein:vir:104549	Syn9 P-SSM2 P-SSM4	72 % 71 % 71 %
Portal	protein:vir:103177 protein:vir:104500 protein:vir:106999	Syn9 P-SSM4 S-PM2	64 % 63 % 58 %
TermL	protein:vir:103169 protein:vir:104536 protein:vir:106989	Syn9 P-SSM4 S-PM2	78 % 76 % 68 %
MTP	protein:vir:103176 protein:vir:104504 protein:vir:104771	Syn9 P-SSM4 P-SSM2	50 % 49 % 37 %
Sheath	protein:vir:104477 protein:vir:103168 protein:vir:104858	P-SSM4 Syn9 P-SSM2	49 % 44 % 39 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	44 % 43 % 41 %
Hc2	protein:vir:104476 protein:vir:103005 protein:vir:106986	P-SSM4 Syn9 S-PM2	55 % 53 % 48 %
Tc2	protein:vir:103006 protein:vir:104479 protein:vir:106987	Syn9 P-SSM4 S-PM2	60 % 53 % 49 %