Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 135 lcl|NC_020851.1_cdsid_YP_007674500.1 HHsearch (proba=100.00%)
Portal 142 lcl|NC_020851.1_cdsid_YP_007674507.1 HHsearch (proba=100.00%)
TermL 145 lcl|NC_020851.1_cdsid_YP_007674510.1 Blast (e-value=0)
MTP 143 lcl|NC_020851.1_cdsid_YP_007674508.1 Blast (e-value=9e-72)
Sheath 144 lcl|NC_020851.1_cdsid_YP_007674509.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 152 lcl|NC_020851.1_cdsid_YP_007674517.1 HHsearch (proba=100.00%)
Hc2 151 lcl|NC_020851.1_cdsid_YP_007674516.1 HHsearch (proba=100.00%)
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104915
protein:vir:104549
protein:vir:106998
P-SSM2
P-SSM4
S-PM2
78 %
66 %
65 %
Portal protein:vir:104892
protein:vir:103177
protein:vir:104500
P-SSM2
Syn9
P-SSM4
76 %
57 %
56 %
TermL protein:vir:104946
protein:vir:106989
protein:vir:103169
P-SSM2
S-PM2
Syn9
79 %
72 %
69 %
MTP protein:vir:104771
protein:vir:103176
protein:vir:104504
P-SSM2
Syn9
P-SSM4
66 %
51 %
47 %
Sheath protein:vir:104858
protein:vir:106984
protein:vir:104477
P-SSM2
S-PM2
P-SSM4
66 %
40 %
38 %
Ad2 protein:vir:104694
protein:vir:106985
protein:vir:103004
P-SSM2
S-PM2
Syn9
77 %
52 %
41 %
Hc2 protein:vir:104739
protein:vir:106986
protein:vir:104476
P-SSM2
S-PM2
P-SSM4
47 %
40 %
38 %