Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-SKS1 | Genbank acc : NC_020851

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 281

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	135	lcl\|NC_020851.1_cdsid_YP_007674500.1	HHsearch (proba=100.00%)
Portal	142	lcl\|NC_020851.1_cdsid_YP_007674507.1	HHsearch (proba=100.00%)
TermL	145	lcl\|NC_020851.1_cdsid_YP_007674510.1	Blast (e-value=0)
MTP	143	lcl\|NC_020851.1_cdsid_YP_007674508.1	Blast (e-value=9e-72)
Sheath	144	lcl\|NC_020851.1_cdsid_YP_007674509.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	152	lcl\|NC_020851.1_cdsid_YP_007674517.1	HHsearch (proba=100.00%)
Hc2	151	lcl\|NC_020851.1_cdsid_YP_007674516.1	HHsearch (proba=100.00%)
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:104549 protein:vir:106998	P-SSM2 P-SSM4 S-PM2	78 % 66 % 65 %
Portal	protein:vir:104892 protein:vir:103177 protein:vir:104500	P-SSM2 Syn9 P-SSM4	76 % 57 % 56 %
TermL	protein:vir:104946 protein:vir:106989 protein:vir:103169	P-SSM2 S-PM2 Syn9	79 % 72 % 69 %
MTP	protein:vir:104771 protein:vir:103176 protein:vir:104504	P-SSM2 Syn9 P-SSM4	66 % 51 % 47 %
Sheath	protein:vir:104858 protein:vir:106984 protein:vir:104477	P-SSM2 S-PM2 P-SSM4	66 % 40 % 38 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	77 % 52 % 41 %
Hc2	protein:vir:104739 protein:vir:106986 protein:vir:104476	P-SSM2 S-PM2 P-SSM4	47 % 40 % 38 %