Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : MED4-213 | Genbank acc : NC_020845

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 216

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	2	lcl\|NC_020845.1_cdsid_YP_007673748.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_020845.1_cdsid_YP_007673752.1	HHsearch (proba=100.00%)
TermL	9	lcl\|NC_020845.1_cdsid_YP_007673755.1	Blast (e-value=0)
MTP	7	lcl\|NC_020845.1_cdsid_YP_007673753.1	Blast (e-value=3e-38)
Sheath	8	lcl\|NC_020845.1_cdsid_YP_007673754.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	17	lcl\|NC_020845.1_cdsid_YP_007673763.1	HHsearch (proba=100.00%)
Hc2	16	lcl\|NC_020845.1_cdsid_YP_007673762.1	HHsearch (proba=100.00%)
Tc2	15	lcl\|NC_020845.1_cdsid_YP_007673761.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104915 protein:vir:104549	Syn9 P-SSM2 P-SSM4	68 % 65 % 65 %
Portal	protein:vir:106999 protein:vir:103177 protein:vir:104892	S-PM2 Syn9 P-SSM2	58 % 56 % 55 %
TermL	protein:vir:106989 protein:vir:104946 protein:vir:103169	S-PM2 P-SSM2 Syn9	71 % 69 % 66 %
MTP	protein:vir:106918 protein:vir:103176 protein:vir:104504	S-PM2 Syn9 P-SSM4	41 % 35 % 35 %
Sheath	protein:vir:106984 protein:vir:104477 protein:vir:104858	S-PM2 P-SSM4 P-SSM2	43 % 42 % 41 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	49 % 42 % 37 %
Hc2	protein:vir:104476 protein:vir:106986 protein:vir:104739	P-SSM4 S-PM2 P-SSM2	40 % 36 % 34 %
Tc2	protein:vir:103006 protein:vir:104479 protein:vir:106987	Syn9 P-SSM4 S-PM2	43 % 42 % 42 %