Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JBD5 | Genbank acc : NC_020202

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 59

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	40	lcl\|NC_020202.1_cdsid_YP_007392744.1	HHsearch (proba=100.00%)
Portal	31	lcl\|NC_020202.1_cdsid_YP_007392735.1	HHsearch (proba=100.00%)
TermL	30	lcl\|NC_020202.1_cdsid_YP_007392734.1	Blast (e-value=0)
MTP	46	lcl\|NC_020202.1_cdsid_YP_007392750.1	Blast (e-value=1e-147)
Sheath	NOT FOUND
Ad1	43	lcl\|NC_020202.1_cdsid_YP_007392747.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	33	lcl\|NC_020202.1_cdsid_YP_007392737.1	HHsearch (proba=100.00%)
Tc1	44	lcl\|NC_020202.1_cdsid_YP_007392748.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	10	3
Ne1<->Tc1	11	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103886 protein:vir:79246 protein:vir:99228	D3112 Phage MP22 DMS3	99 % 39 % 39 %
Portal	protein:vir:103860 protein:vir:99232 protein:vir:79233	D3112 DMS3 Phage MP22	99 % 78 % 77 %
TermL	protein:vir:79222 protein:vir:99234 protein:vir:103868	Phage MP22 DMS3 D3112	97 % 37 % 37 %
MTP	protein:vir:103876 protein:vir:99223 protein:vir:79254	D3112 DMS3 Phage MP22	100 % 96 % 56 %
Ad1	protein:vir:103846 protein:vir:79253 protein:vir:99222	D3112 Phage MP22 DMS3	100 % 67 % 67 %
Ne1	protein:vir:103841 protein:vir:79225 protein:vir:99196	D3112 Phage MP22 DMS3	98 % 72 % 72 %
Tc1	protein:vir:103883 protein:vir:79247 protein:vir:99226	D3112 Phage MP22 DMS3	98 % 71 % 71 %