Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SC2 | Genbank acc : NC_019550

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|NC_019550.1_cdsid_YP_007011109.1	HHsearch (proba=100.00%)
Portal	17	lcl\|NC_019550.1_cdsid_YP_007011112.1	HHsearch (proba=100.00%)
TermL	18	lcl\|NC_019550.1_cdsid_YP_007011113.1	Blast (e-value=3e-52)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	13	lcl\|NC_019550.1_cdsid_YP_007011108.1	HHsearch (proba=100.00%)
Hc3	12	lcl\|NC_019550.1_cdsid_YP_007011107.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102655 protein:vir:1541 protein:vir:3364	VP2 phiYeO3-12 T3	15 % 15 % 14 %
Portal	protein:vir:103765 protein:vir:102668 protein:vir:95315	BcepC6B VP2 phiV10	24 % 21 % 21 %
TermL	protein:vir:95311 protein:vir:7319 protein:vir:107805	phiV10 epsilon15 BIP-1	29 % 29 % 17 %
Ad3	protein:vir:7328 protein:vir:95323 protein:vir:103760	epsilon15 phiV10 BcepC6B	26 % 25 % 24 %
Hc3	protein:vir:103790 protein:vir:95324 protein:vir:7329	BcepC6B phiV10 epsilon15	24 % 23 % 23 %