Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 28 lcl|NC_016659.1_cdsid_YP_005087541.1 HHsearch (proba=100.00%)
Portal 36 lcl|NC_016659.1_cdsid_YP_005087549.1 HHsearch (proba=100.00%)
TermL NOT FOUND
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 27 lcl|NC_016659.1_cdsid_YP_005087540.1 HHsearch (proba=100.00%)
Hc3 26 lcl|NC_016659.1_cdsid_YP_005087539.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:100057
protein:vir:78739
protein:vir:1781
P-SSP7
Syn5
P60
73 %
43 %
36 %
Portal protein:vir:100039
protein:vir:78696
protein:vir:1785
P-SSP7
Syn5
P60
62 %
51 %
50 %
Ad3 protein:vir:100027
protein:vir:1780
protein:vir:78741
P-SSP7
P60
Syn5
37 %
37 %
35 %
Hc3 protein:vir:78703
protein:vir:1778
protein:vir:100022
Syn5
P60
P-SSP7
30 %
29 %
27 %