Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Syn1 | Genbank acc : NC_015288

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 234

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	123	lcl\|NC_015288.1_cdsid_YP_004324495.1	HHsearch (proba=100.00%)
Portal	119	lcl\|NC_015288.1_cdsid_YP_004324491.1	HHsearch (proba=100.00%)
TermL	115	lcl\|NC_015288.1_cdsid_YP_004324487.1	Blast (e-value=0)
MTP	118	lcl\|NC_015288.1_cdsid_YP_004324490.1	Blast (e-value=1e-102)
Sheath	117	lcl\|NC_015288.1_cdsid_YP_004324489.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	105	lcl\|NC_015288.1_cdsid_YP_004324477.1	HHsearch (proba=100.00%)
Hc2	106	lcl\|NC_015288.1_cdsid_YP_004324478.1	HHsearch (proba=100.00%)
Tc2	107	lcl\|NC_015288.1_cdsid_YP_004324479.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106998 protein:vir:104549 protein:vir:103181	S-PM2 P-SSM4 Syn9	89 % 66 % 65 %
Portal	protein:vir:106999 protein:vir:104892 protein:vir:103177	S-PM2 P-SSM2 Syn9	88 % 58 % 58 %
TermL	protein:vir:106989 protein:vir:104946 protein:vir:103169	S-PM2 P-SSM2 Syn9	91 % 69 % 67 %
MTP	protein:vir:106918 protein:vir:104771 protein:vir:104504	S-PM2 P-SSM2 P-SSM4	84 % 43 % 40 %
Sheath	protein:vir:106984 protein:vir:104477 protein:vir:104858	S-PM2 P-SSM4 P-SSM2	70 % 41 % 39 %
Ad2	protein:vir:106985 protein:vir:104694 protein:vir:103004	S-PM2 P-SSM2 Syn9	87 % 49 % 39 %
Hc2	protein:vir:106986 protein:vir:104476 protein:vir:103005	S-PM2 P-SSM4 Syn9	82 % 47 % 46 %
Tc2	protein:vir:106987 protein:vir:103006 protein:vir:104479	S-PM2 Syn9 P-SSM4	81 % 48 % 43 %