Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P-HM2 | Genbank acc : NC_015284

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 242

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	122	lcl\|NC_015284.1_cdsid_YP_004323491.1	HHsearch (proba=100.00%)
Portal	118	lcl\|NC_015284.1_cdsid_YP_004323487.1	HHsearch (proba=100.00%)
TermL	115	lcl\|NC_015284.1_cdsid_YP_004323484.1	Blast (e-value=0)
MTP	117	lcl\|NC_015284.1_cdsid_YP_004323486.1	Blast (e-value=1e-37)
Sheath	116	lcl\|NC_015284.1_cdsid_YP_004323485.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	107	lcl\|NC_015284.1_cdsid_YP_004323476.1	HHsearch (proba=100.00%)
Hc2	108	lcl\|NC_015284.1_cdsid_YP_004323477.1	HHsearch (proba=100.00%)
Tc2	109	lcl\|NC_015284.1_cdsid_YP_004323478.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	66 % 65 % 63 %
Portal	protein:vir:106999 protein:vir:103177 protein:vir:104892	S-PM2 Syn9 P-SSM2	58 % 56 % 56 %
TermL	protein:vir:106989 protein:vir:104946 protein:vir:104536	S-PM2 P-SSM2 P-SSM4	72 % 70 % 68 %
MTP	protein:vir:106918 protein:vir:103176 protein:vir:104504	S-PM2 Syn9 P-SSM4	40 % 35 % 34 %
Sheath	protein:vir:104858 protein:vir:104477 protein:vir:106984	P-SSM2 P-SSM4 S-PM2	44 % 42 % 40 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	48 % 42 % 36 %
Hc2	protein:vir:104476 protein:vir:106986 protein:vir:104739	P-SSM4 S-PM2 P-SSM2	37 % 37 % 35 %
Tc2	protein:vir:103006 protein:vir:104479 protein:vir:106987	Syn9 P-SSM4 S-PM2	47 % 43 % 43 %