Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-SM2 | Genbank acc : NC_015279

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 267

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	117	lcl\|NC_015279.1_cdsid_YP_004322275.1	HHsearch (proba=100.00%)
Portal	112	lcl\|NC_015279.1_cdsid_YP_004322270.1	HHsearch (proba=100.00%)
TermL	108	lcl\|NC_015279.1_cdsid_YP_004322266.1	Blast (e-value=0)
MTP	111	lcl\|NC_015279.1_cdsid_YP_004322269.1	Blast (e-value=1e-46)
Sheath	110	lcl\|NC_015279.1_cdsid_YP_004322268.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	101	lcl\|NC_015279.1_cdsid_YP_004322259.1	HHsearch (proba=100.00%)
Hc2	102	lcl\|NC_015279.1_cdsid_YP_004322260.1	HHsearch (proba=100.00%)
Tc2	103	lcl\|NC_015279.1_cdsid_YP_004322261.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	78 % 64 % 63 %
Portal	protein:vir:104892 protein:vir:106999 protein:vir:103177	P-SSM2 S-PM2 Syn9	68 % 59 % 57 %
TermL	protein:vir:104946 protein:vir:106989 protein:vir:103169	P-SSM2 S-PM2 Syn9	77 % 72 % 70 %
MTP	protein:vir:104771 protein:vir:103176 protein:vir:106918	P-SSM2 Syn9 S-PM2	52 % 45 % 43 %
Sheath	protein:vir:104858 protein:vir:104477 protein:vir:106984	P-SSM2 P-SSM4 S-PM2	46 % 39 % 36 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	60 % 48 % 43 %
Hc2	protein:vir:104739 protein:vir:106986 protein:vir:104476	P-SSM2 S-PM2 P-SSM4	45 % 40 % 38 %
Tc2	protein:vir:104479 protein:vir:103006 protein:vir:104695	P-SSM4 Syn9 P-SSM2	52 % 49 % 46 %