Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 32 lcl|NC_015271.1_cdsid_YP_004306683.1 HHsearch (proba=100.00%)
Portal 30 lcl|NC_015271.1_cdsid_YP_004306681.1 HHsearch (proba=100.00%)
TermL NOT FOUND
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 34 lcl|NC_015271.1_cdsid_YP_004306685.1 HHsearch (proba=100.00%)
Hc3 35 lcl|NC_015271.1_cdsid_YP_004306686.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:10450
protein:vir:2201
protein:vir:94576
phiA1122
T7
Berlin
80 %
80 %
74 %
Portal protein:vir:10447
protein:vir:2198
protein:vir:3361
phiA1122
T7
T3
97 %
97 %
84 %
Ad3 protein:vir:10451
protein:vir:2202
protein:vir:3365
phiA1122
T7
T3
97 %
96 %
81 %
Hc3 protein:vir:10452
protein:vir:2203
protein:vir:3366
phiA1122
T7
T3
85 %
85 %
68 %