Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi15 | Genbank acc : NC_015208

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|NC_015208.1_cdsid_YP_004286214.1	HHsearch (proba=100.00%)
Portal	34	lcl\|NC_015208.1_cdsid_YP_004286212.1	HHsearch (proba=100.00%)
TermL	49	lcl\|NC_015208.1_cdsid_YP_004286227.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	38	lcl\|NC_015208.1_cdsid_YP_004286216.1	HHsearch (proba=100.00%)
Hc3	39	lcl\|NC_015208.1_cdsid_YP_004286217.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8885 protein:vir:94711 protein:vir:94576	gh-1 K1F Berlin	81 % 77 % 76 %
Portal	protein:vir:8883 protein:vir:94572 protein:vir:1538	gh-1 Berlin phiYeO3-12	74 % 66 % 66 %
TermL	protein:vir:8897 protein:vir:99686 protein:vir:94726	gh-1 VP4 K1F	73 % 68 % 68 %
Ad3	protein:vir:8886 protein:vir:1542 protein:vir:94565	gh-1 phiYeO3-12 Berlin	58 % 58 % 57 %
Hc3	protein:vir:8887 protein:vir:94713 protein:vir:94583	gh-1 K1F Berlin	61 % 52 % 52 %