Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_012742.1_cdsid_YP_002922620.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_012742.1_cdsid_YP_002922618.1 HHsearch (proba=100.00%)
TermL 3 lcl|NC_012742.1_cdsid_YP_002922617.1 Blast (e-value=0)
MTP 12 lcl|NC_012742.1_cdsid_YP_002922626.1 Blast (e-value=7e-36)
Sheath NOT FOUND
Ad1 8 lcl|NC_012742.1_cdsid_YP_002922622.1 HHsearch (proba=100.00%)
Hc1 9 lcl|NC_012742.1_cdsid_YP_002922623.1 HHsearch (proba=100.00%)
Ne1 10 lcl|NC_012742.1_cdsid_YP_002922624.1 HHsearch (proba=100.00%)
Tc1 11 lcl|NC_012742.1_cdsid_YP_002922625.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:97053
protein:vir:10364
protein:vir:81070
OP1
Xp10
Xop411
59 %
58 %
57 %
Portal protein:vir:81072
protein:vir:97060
protein:vir:10362
Xop411
OP1
Xp10
62 %
62 %
62 %
TermL protein:vir:10361
protein:vir:81073
protein:vir:97071
Xp10
Xop411
OP1
73 %
72 %
70 %
MTP protein:vir:81065
protein:vir:97081
protein:vir:10369
Xop411
OP1
Xp10
41 %
40 %
39 %
Ad1 protein:vir:81069
protein:vir:10365
protein:vir:97069
Xop411
Xp10
OP1
51 %
50 %
49 %
Hc1 protein:vir:97076
protein:vir:10366
protein:vir:81068
OP1
Xp10
Xop411
55 %
55 %
54 %
Ne1 protein:vir:97088
protein:vir:81067
protein:vir:10367
OP1
Xop411
Xp10
48 %
47 %
47 %
Tc1 protein:vir:97070
protein:vir:10368
protein:vir:81066
OP1
Xp10
Xop411
62 %
61 %
59 %