Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : UAB_Phi78 | Genbank acc : NC_020414

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	40	lcl\|NC_020414.1_cdsid_YP_007501015.1	HHsearch (proba=100.00%)
Portal	37	lcl\|NC_020414.1_cdsid_YP_007501012.1	HHsearch (proba=100.00%)
TermL	49	lcl\|NC_020414.1_cdsid_YP_007501024.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	41	lcl\|NC_020414.1_cdsid_YP_007501016.1	HHsearch (proba=100.00%)
Hc3	42	lcl\|NC_020414.1_cdsid_YP_007501017.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:7019 protein:vir:105645 protein:vir:97031	SP6 K1E K1-5	98 % 93 % 84 %
Portal	protein:vir:7017 protein:vir:105641 protein:vir:96988	SP6 K1E K1-5	99 % 86 % 86 %
TermL	protein:vir:7028 protein:vir:97005 protein:vir:105656	SP6 K1-5 K1E	97 % 79 % 78 %
Ad3	protein:vir:7020 protein:vir:105646 protein:vir:97033	SP6 K1E K1-5	98 % 87 % 86 %
Hc3	protein:vir:7021 protein:vir:105647 protein:vir:97014	SP6 K1E K1-5	97 % 82 % 82 %