Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PP1 | Genbank acc : NC_019542

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|NC_019542.1_cdsid_YP_007010676.1	HHsearch (proba=100.00%)
Portal	31	lcl\|NC_019542.1_cdsid_YP_007010674.1	HHsearch (proba=100.00%)
TermL	42	lcl\|NC_019542.1_cdsid_YP_007010685.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	34	lcl\|NC_019542.1_cdsid_YP_007010677.1	HHsearch (proba=100.00%)
Hc3	35	lcl\|NC_019542.1_cdsid_YP_007010678.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:7019 protein:vir:105645 protein:vir:97031	SP6 K1E K1-5	79 % 78 % 78 %
Portal	protein:vir:105641 protein:vir:96988 protein:vir:7017	K1E K1-5 SP6	69 % 69 % 69 %
TermL	protein:vir:7028 protein:vir:97005 protein:vir:105656	SP6 K1-5 K1E	88 % 77 % 77 %
Ad3	protein:vir:7020 protein:vir:105646 protein:vir:97033	SP6 K1E K1-5	67 % 65 % 64 %
Hc3	protein:vir:105647 protein:vir:97014 protein:vir:7021	K1E K1-5 SP6	56 % 56 % 54 %