Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 29 lcl|NC_019445.1_cdsid_YP_007001980.1 HHsearch (proba=100.00%)
Portal 26 lcl|NC_019445.1_cdsid_YP_007001977.1 HHsearch (proba=100.00%)
TermL 22 lcl|NC_019445.1_cdsid_YP_007001973.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 33 lcl|NC_019445.1_cdsid_YP_007001984.1 HHsearch (proba=100.00%)
Hc3 34 lcl|NC_019445.1_cdsid_YP_007001985.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95318
protein:vir:103759
protein:vir:107826
phiV10
BcepC6B
BIP-1
100 %
62 %
61 %
Portal protein:vir:95315
protein:vir:7321
protein:vir:107822
phiV10
epsilon15
BIP-1
99 %
80 %
44 %
TermL protein:vir:95311
protein:vir:7319
protein:vir:107805
phiV10
epsilon15
BIP-1
99 %
94 %
17 %
Ad3 protein:vir:95323
protein:vir:7328
protein:vir:103760
phiV10
epsilon15
BcepC6B
100 %
84 %
32 %
Hc3 protein:vir:95324
protein:vir:7329
protein:vir:107802
phiV10
epsilon15
BIP-1
99 %
85 %
37 %