Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_011288.1_cdsid_YP_002241691.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_011288.1_cdsid_YP_002241688.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_011288.1_cdsid_YP_002241687.1 Blast (e-value=0)
MTP 11 lcl|NC_011288.1_cdsid_YP_002241696.1 Blast (e-value=1e-160)
Sheath NOT FOUND
Ad1 7 lcl|NC_011288.1_cdsid_YP_002241692.1 HHsearch (proba=100.00%)
Hc1 8 lcl|NC_011288.1_cdsid_YP_002241693.1 HHsearch (proba=100.00%)
Ne1 9 lcl|NC_011288.1_cdsid_YP_002241694.1 HHsearch (proba=100.00%)
Tc1 10 lcl|NC_011288.1_cdsid_YP_002241695.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:102605
protein:vir:105822
protein:vir:7990
Llij
PMC
Che8
99 %
99 %
98 %
Portal protein:vir:102602
protein:vir:105819
protein:vir:7987
Llij
PMC
Che8
98 %
98 %
98 %
TermL protein:vir:102601
protein:vir:105818
protein:vir:7986
Llij
PMC
Che8
97 %
97 %
97 %
MTP protein:vir:102610
protein:vir:105827
protein:vir:7995
Llij
PMC
Che8
99 %
99 %
99 %
Ad1 protein:vir:102606
protein:vir:105823
protein:vir:7991
Llij
PMC
Che8
72 %
72 %
72 %
Hc1 protein:vir:7992
protein:vir:102607
protein:vir:105824
Che8
Llij
PMC
76 %
75 %
75 %
Ne1 protein:vir:102608
protein:vir:105825
protein:vir:7993
Llij
PMC
Che8
90 %
90 %
90 %
Tc1 protein:vir:102609
protein:vir:105826
protein:vir:7994
Llij
PMC
Che8
69 %
69 %
68 %