Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Av-1 | Genbank acc : NC_009643 | Aclame index mge :1869

Category to which the Query Phage was assigned : Podoviridae of Type4 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 21

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:79399\|NCBI_annot:head	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:79400\|NCBI_annot:upper	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	12	lcl\|Aclame:protein:vir:79392\|NCBI_annot:lower	HHsearch (proba=100.00%)

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79399 protein:vir:118 protein:vir:5202	Av-1 B103 PZA	100 % 33 % 31 %
Portal	protein:vir:79400 protein:vir:4732 protein:vir:5205	Av-1 Cp-1 PZA	100 % 30 % 29 %
Ad4	protein:vir:79392 protein:vir:122 protein:vir:5206	Av-1 B103 PZA	100 % 29 % 28 %