Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : GA-1 | Genbank acc : NC_002649 | Aclame index mge :323

Category to which the Query Phage was assigned : Podoviridae of Type4 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 35

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	15	lcl\|Aclame:protein:vir:15\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	17	lcl\|Aclame:protein:vir:17\|NCBI_annot:head-tail	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	18	lcl\|Aclame:protein:vir:18\|NCBI_annot:lower	HHsearch (proba=100.00%)

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:15 protein:vir:118 protein:vir:5202	GA-1 B103 PZA	97 % 53 % 51 %
Portal	protein:vir:17 protein:vir:5205 protein:vir:121	GA-1 PZA B103	100 % 54 % 53 %
Ad4	protein:vir:18 protein:vir:5206 protein:vir:122	GA-1 PZA B103	100 % 36 % 36 %