InterEvol: Downloads
| COMPO70.table | This file lists the PDB codes of the complexes sharing the same composition in chains. Chains were considered equivalent when they shared more than 70% sequence identity over at least 70% of their global length. The PDB in the first column corresponds to the structure of best resolution (cluster reference). In case both NMR and Xray structures were available the Xray structure was set in the first column. |
| COMPO70_REFINFO.table | This file lists the PDB code of complexes considered as cluster reference. They contain a non redundant composition of chains. Two chains were considered redundant if they share 70% sequence identity over at least 70% of their global length. For every PDB, resolution, methods, biological unit definition, species and functions are provided. |
| ALLINTER.table | This file lists all the interfaces extracted in COMPO70 (previous list). All the non redundant interfaces identified in the biological assembly of a PDB file are listed. For every PDB non redundant interfaces were extracted and their type, species and functions are provided. Interfaces are defined as dimers interacting through at least 10 contacts involving different amino acids. Contacts were defined using a 5 A full atom cut-off. For 2 dimers AB and A'B', if AA' and BB' share at least 70% sequence identity and 70% of coverage, and the position of residues at the interfaces AA' and BB' overlay by more than 40%, AB and A'B' are defined as redundant interface. |
| INTER70.table | This file lists all the non redundant reference interfaces (first column) and those considered as redundant. Every line corresponds to a group of redundant interface. Interfaces are defined as dimers interacting through at least 10 contacts involving different amino acids. Contacts were defined using a 5 A full atom cut-off. For 2 dimers AB and A'B', if AA' and BB' share at least 70% sequence identity and 70% of coverage, and the position of residues at the interfaces AA' and BB' overlay by more than 40%, AB and A'B' are defined as redundant interface. The PDB in the first column generally corresponds to the structure of best resolution (cluster reference). In case both NMR and Xray structures were available the Xray structure was set in the first column. |
| INTER70_REFINFO.table | This file lists all the non redundant reference interfaces. For every interface, surface area, biological and obligate predictions, species, functions, number of interologs are provided. Interfaces are defined as dimers interacting through at least 10 contacts involving different amino acids. Contacts were defined using a 5 A full atom cut-off. For 2 dimers AB and A'B', if AA' and BB' share at least 70% sequence identity and 70% of coverage, and the position of residues at the interfaces AA' and BB' overlay by more than 40%, AB and A'B' are defined as redundant interface. |
Warning!! Chain names and residue indexes may have been reassigned and differ from the original PDB file (more info)
