![go to ISPH... go to ISPH...](IMAGES/isph.png) |
ISPH: Iron-Sulfur ProteHome. |
![go to Dock3DinDepth... go to Dock3DinDepth...](IMAGES/dock3dindepth.jpg) |
Dock3DinDepth: docking isosurfaces into AFM|SAXS|cryoEM envelopes. |
![go to CombineDocksAFM... go to CombineDocksAFM...](IMAGES/combinedocksafm.png) |
CombineDocksAFM: combine of docking solutions of structural subunits under an AFM surface. |
![go to DockAFM... go to DockAFM...](IMAGES/dockafm.png) |
DockAFM: docking structures under an AFM surface. |
![go to ActinSimu... go to ActinSimu...](IMAGES/actinsimu.png) |
ActinSimu: In silico study of actin-based force generation during cell movement or morphogenesis. |
![go to Morpheus... go to Morpheus...](IMAGES/morpheus.jpg) |
Morpheus offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences. |
![go to InterEvol server... go to InterEvol server...](IMAGES/interevol.png) |
The InterEvol server is designed to combine structural and evolutionary analyses of protein complexes interfaces. |
![go to DeStripe... go to DeStripe...](IMAGES/destripe.jpg) |
DeStripe uses a denoising protocol for the AFM images that are contaminated with heavy stripes. |
![go to Adepth... go to Adepth...](IMAGES/adepth.jpg) |
Adepth computes the atom depths in proteins which is derived from trilinear interpolation of the signed distance function (SDF) at the nearest grid points surrounding the atom. |
![go to BRIDGED... go to BRIDGED...](IMAGES/bridged.jpg) |
BRIDGED server computes all the possibilities of inserting a disulfide bond into a protein. |
![go to VIRFAM server...](IMAGES/virfam.png) |
The VIRFAM server can be used to analyze a set of sequences from bacteriophages genomes and check the existence of putative remote homologs of protein superfamilies (only recombinase so far) |
![go to P2CS... go to P2CS...](IMAGES/p2cs.jpg) |
P2CS is an integrated and comprehensive database of two-component system (TCS) signal transduction proteins, which contains a compilation of the TCS genes within 1125 completely sequenced genomes and 39 metagenomes. |
![go to P2TF... go to P2TF...](IMAGES/p2tf.jpg) |
P2TF is an integrated and comprehensive database of TF proteins, which contains a compilation of the TF genes within 1021 completely sequenced genomes and 39 metagenomes. |
![go to DSIR... go to DSIR...](IMAGES/dsir.png) |
DSIR is a tool for siRNA (19 or 21 nt) and shRNA target design. |
![go to RASMOT3D... go to RASMOT3D...](IMAGES/rasmot3d.png) |
RASMOT-3D PRO searches in protein structure files for proteins possessing a group of residues in a topology similar to that adopted by a 3D motif given in input. |
![go to STRIP server...](IMAGES/strip.png) |
The STRIP server helps designing phospho-binding site mutants in S. cerevisiae proteins. |
![go to HMM-kalign web page...](IMAGES/kalign.png) |
HMM-kalign package consists in the HMMER-2.3.2 package supplemented with a new function to generate sub-optimal alignments between one sequence and one HMM |
![go to SCOTCH server...](IMAGES/scotch.png) |
The SCOTCH server can be used to score structural models of protein complexes based on evolutionary informations. |
![go to INTEROPORC... go to INTEROPORC...](IMAGES/interoporc.png) |
InteroPorc is an automatic prediction tool to infer protein-protein interaction networks. It is applicable for lots of species using orthology and known interactions. |