Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 10 lcl|NC_010353.1_cdsid_YP_001686804.1 HHsearch (proba=100.00%)
Portal 6 lcl|NC_010353.1_cdsid_YP_001686800.1 HHsearch (proba=100.00%)
TermL 4 lcl|NC_010353.1_cdsid_YP_001686798.1 Blast (e-value=1e-125)
MTP 16 lcl|NC_010353.1_cdsid_YP_001686810.1 Blast (e-value=7e-95)
Sheath NOT FOUND
Ad1 12 lcl|NC_010353.1_cdsid_YP_001686806.1 HHsearch (proba=100.00%)
Hc1 13 lcl|NC_010353.1_cdsid_YP_001686807.1 HHsearch (proba=100.00%)
Ne1 14 lcl|NC_010353.1_cdsid_YP_001686808.1 HHsearch (proba=100.00%)
Tc1 15 lcl|NC_010353.1_cdsid_YP_001686809.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:96490
protein:vir:4902
protein:vir:2736
2972
Sfi11
O1205
99 %
94 %
93 %
Portal protein:vir:96494
protein:vir:2732
protein:vir:4898
2972
O1205
Sfi11
100 %
96 %
93 %
TermL protein:vir:4897
protein:vir:2731
protein:vir:105897
Sfi11
O1205
phiETA3
95 %
94 %
55 %
MTP protein:vir:96484
protein:vir:2742
protein:vir:4908
2972
O1205
Sfi11
99 %
94 %
92 %
Ad1 protein:vir:96488
protein:vir:2738
protein:vir:4904
2972
O1205
Sfi11
100 %
96 %
84 %
Hc1 protein:vir:96487
protein:vir:2739
protein:vir:4905
2972
O1205
Sfi11
100 %
85 %
84 %
Ne1 protein:vir:96486
protein:vir:4906
protein:vir:2740
2972
Sfi11
O1205
100 %
84 %
84 %
Tc1 protein:vir:96485
protein:vir:2741
protein:vir:4907
2972
O1205
Sfi11
99 %
93 %
91 %