Welcome to bridgeD

The server computes all the possibilities of inserting a disulfide bond into a protein. To improve the coverage of all potential sites, it is recommended to run bridgeD on multiple template structures (multiple submissions) and to concatenate output results.

At low resolution, a run will take a few minutes whereas at high resolution a run will take a few hours (depending on the clustering size). In the reference paper, the highest resolution was used.

1. Input your PDB file
Simply enter the PDB code or upload a .pdb file.
PDB code :
 must exists in PDB 
or upload your PDB file :
PDB chain ID :
Remove existing disulfide :
Resolution :
2. Getting results
Enter a valid e-mail address where we can send a link to the results when the run is completed.
E-mail :  

If you find this site useful, please cite :
Pellequer J-L, Chen S-wW. Multi-template approach to modeling engineered disulfide bonds. Proteins 2006; 65:192-202.

 

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