Query lcl|NC_021533.1_cdsid_YP_008126109.1 [gene=M614_gp18] [protein=hypothetical protein] [protein_id=YP_008126109.1] [location=13613..14029] Match_columns 138 No_of_seqs 11 out of 13 Neff 1.9 Searched_HMMs 1612 Date Thu Nov 7 17:18:50 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_18 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_18_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:104092 Length: 140 100.0 2.4E-98 2E-101 555.7 10.2 137 1-138 1-137 (140) 2 protein:vir:2436 Length: 139 # 100.0 5.1E-98 3E-101 554.0 10.2 136 1-138 1-137 (139) 3 protein:vir:7777 Length: 135 # 100.0 7.3E-98 5E-101 553.1 9.7 135 1-138 1-135 (135) 4 protein:vir:4231 Length: 139 # 100.0 9.3E-98 6E-101 552.5 9.9 136 1-138 1-137 (139) 5 protein:vir:2348 Length: 148 # 100.0 1.1E-95 6.7E-99 541.2 9.5 138 1-138 2-148 (148) 6 protein:vir:78292 Length: 148 100.0 1.2E-95 7.3E-99 541.0 9.3 138 1-138 2-148 (148) 7 protein:vir:78481 Length: 148 100.0 1.2E-95 7.3E-99 541.0 9.3 138 1-138 2-148 (148) 8 protein:vir:99005 Length: 170 49.2 0.32 0.0002 23.3 4.8 130 1-138 1-157 (170) 9 protein:vir:9576 Length: 131 # 37.3 0.48 0.0003 22.3 3.8 73 66-138 1-122 (131) 10 protein:vir:98426 Length: 131 30.1 1.6 0.00099 19.5 7.3 126 1-136 1-131 (131) 11 protein:vir:9761 Length: 140 # 25.3 0.8 0.00049 21.1 2.9 66 66-138 1-122 (140) No 1 >protein:vir:104092 Length: 140 # NCBI annotation: gp24 # Family: family:all:2820 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655603;genbank:gi:109392474;genbank:GeneID:4156960 Probab=100.00 E-value=2.4e-98 Score=555.73 Aligned_cols=137 Identities=63% Similarity=1.033 Sum_probs=134.1 Q ss_pred CCCCchhHHHHHHHhhhhcccccceeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHH Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRDALVPEKAAKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQAGLIECEEL 80 (138) Q Consensus 1 m~~~prvq~VvlpiLR~~l~p~~~v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~egl~e~eel 80 (138) |++|||||+||+||||+++.+ .+|+|||||+|||||+|||||||||||+|||++|.+|++||||||||++||||||||| T Consensus 1 m~~~Prvq~VV~PiLR~~~~l-~~v~v~tWv~diD~R~FPminvRRiGG~R~p~~P~~~~~PViEmtaY~~~gLie~E~l 79 (140) T protein:vir:10 1 MARMPRVQKVVAPILRNALTL-DGVAITTWVPDVDYREFPMINIRRIGGIRNPKAPLLHTNPVIEMSAYSTEGLIECEEL 79 (140) T ss_pred CCCCchhHHHHHhHhhcCCCc-cceeeeccccccccccccceeeeecCCCCCCccchhhhcceeeeeeccccCccchHHH Confidence 999999999999999999643 4688999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 81 YEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 81 Ye~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) |||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 80 YEdaLevLY~Av~~Q~qTPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLIrLGvR~Pr~ 137 (140) T protein:vir:10 80 YEDALEELYLAVQSQTQTPAGYLTSIFETMGATQFSSLYQDSWRVQGLIRLGVRRPRS 137 (140) T ss_pred HHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCccchhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:2436 Length: 139 # NCBI annotation: gp22 # Family: family:all:2820 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046838;genbank:gi:9630406;genbank:GeneID:1261583 Probab=100.00 E-value=5.1e-98 Score=553.99 Aligned_cols=136 Identities=64% Similarity=1.079 Sum_probs=133.6 Q ss_pred CCCCchhHHHHHHHhhhhcccc-cceeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHH Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRDALVPE-KAAKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQAGLIECEE 79 (138) Q Consensus 1 m~~~prvq~VvlpiLR~~l~p~-~~v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~egl~e~ee 79 (138) |++|||||+||+||||++ |. .+|+|+|||+|||||+|||||||||||+||||+|++|++||||||||+++||||||| T Consensus 1 m~~~Prvq~VV~PiLR~~--P~la~v~v~tWv~diD~R~FPminvRRiGG~R~~~~P~~~~~PViEmtaY~~~gLie~E~ 78 (139) T protein:vir:24 1 MGAMPRVQSVVAPILRED--PRLAGVTIVTWVPDIDFREFPMINIRRIGGIRNANAPKLHSLPVVEMSAYSTDGLIECEE 78 (139) T ss_pred CCCCchhhhHHhhhhhcC--cccCCceeeeecccCccccccceeeeecCCCCCcccchhhccceeeeeeccccCccchHH Confidence 999999999999999998 54 458999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 80 LYEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 80 lYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) ||||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 79 lYEdaLevLYdAvk~q~qTPaGYL~Si~ETmGAtqfsS~f~dsWRvqGLI~LGvR~Pr~ 137 (139) T protein:vir:24 79 LYETALEVLYDAVKNGTQTPAGYLSSIFETMGATQFSSLYQDSWRIQGLIRLGVRTPRS 137 (139) T ss_pred HHHHHHHHHHHHHhccccCcchhhhhHhHhhccccCCccchhhhhhhhhhhhcccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:7777 Length: 135 # NCBI annotation: gp22 # Family: family:all:2820 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817611;genbank:gi:29566041;genbank:GeneID:1259235 Probab=100.00 E-value=7.3e-98 Score=553.11 Aligned_cols=135 Identities=73% Similarity=1.215 Sum_probs=134.2 Q ss_pred CCCCchhHHHHHHHhhhhcccccceeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHH Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRDALVPEKAAKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQAGLIECEEL 80 (138) Q Consensus 1 m~~~prvq~VvlpiLR~~l~p~~~v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~egl~e~eel 80 (138) |++|||||+||+||||++| ++|+|||||||||||+|||||||||||+|||++|++|++||||||||++||||||||| T Consensus 1 ~~~~Prvq~VV~PiLR~~L---~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~~gL~etEql 77 (135) T protein:vir:77 1 MAQMPRVQAVVLPILRAAL---PDVKVGSWIEDIDYRTFPMVNVRRVGGPRHETRPDKLALPVIEMTAYGREGLVETEKL 77 (135) T ss_pred CCCCchhHHHHHHHHhhhc---CCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccccCccchHHH Confidence 9999999999999999997 8899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 81 YEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 81 Ye~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) |||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 78 YEdaL~vLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 135 (135) T protein:vir:77 78 YEDALEALYDAVKHQTQTPAGYLHSIKETMGATQFSSLFQDSWRVQGLIQLGVRPPRS 135 (135) T ss_pred HHHHHHHHHHHHhhhccCcchhhhhHHHhhccccCCcchhhhhHhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:4231 Length: 139 # NCBI annotation: predicted 15.7Kd protein # Family: family:all:2820 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039686;swissprot:sw:q05228;genbank:gi:9625452;uniprot:Q05228;genbank:GeneID:2942946 Probab=100.00 E-value=9.3e-98 Score=552.53 Aligned_cols=136 Identities=64% Similarity=1.052 Sum_probs=134.1 Q ss_pred CCCCchhHHHHHHHhhhhcccc-cceeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHH Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRDALVPE-KAAKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQAGLIECEE 79 (138) Q Consensus 1 m~~~prvq~VvlpiLR~~l~p~-~~v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~egl~e~ee 79 (138) |++|||||+||+||||++ |. .+|+|||||+|||||+|||||||||||+||||+|++|++||||||||+++||||||| T Consensus 1 m~~~Prvq~Vv~PiLR~~--P~l~~v~V~tWv~diD~R~FPminvRRiGG~R~p~~Pt~~~~PViEmTaY~~~gLietE~ 78 (139) T protein:vir:42 1 MARMPRVQAVAAPILRSD--PRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEE 78 (139) T ss_pred CCcCchhHHHHhhhhcCC--ccccCceeecccccCccccccceeeeecCCCCCCCCcchhccceeeeeeccccCccchHH Confidence 999999999999999997 54 789999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 80 LYEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 80 lYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) |||||||||||||++||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 79 lYEdaLevLYdAv~~q~qTPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvR~Pr~ 137 (139) T protein:vir:42 79 LYETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGVRRPRT 137 (139) T ss_pred HHHHHHHHHHHHHhccccCcchhhhhhhhhhccccCCccchhhhhhhhhhhhcccCCcc Confidence 99999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:2348 Length: 148 # NCBI annotation: gp18 # Family: family:all:2820 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075285;genbank:gi:12657872;genbank:GeneID:920060 Probab=100.00 E-value=1.1e-95 Score=541.21 Aligned_cols=138 Identities=54% Similarity=0.954 Sum_probs=135.3 Q ss_pred CCCCchhHHHHHHHhhh--------hcccccc-eeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRD--------ALVPEKA-AKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQ 71 (138) Q Consensus 1 m~~~prvq~VvlpiLR~--------~l~p~~~-v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~ 71 (138) -+||||||+||+||||+ ++||..+ |+|||||||||||+|||||||||||+|||++|++|++||||||||++ T Consensus 2 a~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 81 (148) T protein:vir:23 2 AGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) T ss_pred CcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcccceeeeccc Confidence 56999999999999999 8899665 89999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 72 AGLIECEELYEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 72 egl~e~eelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) +|||||||||||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 82 ~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:23 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred cCccchHHHHHHHHHHHHHHHhhhccCcchhhhhhhHhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 6 >protein:vir:78292 Length: 148 # NCBI annotation: gp19 # Family: family:all:2820 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491671;genbank:gi:157786495;genbank:GeneID:5625770 Probab=100.00 E-value=1.2e-95 Score=541.01 Aligned_cols=138 Identities=54% Similarity=0.954 Sum_probs=135.3 Q ss_pred CCCCchhHHHHHHHhhh--------hcccccc-eeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRD--------ALVPEKA-AKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQ 71 (138) Q Consensus 1 m~~~prvq~VvlpiLR~--------~l~p~~~-v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~ 71 (138) -+||||||+||+||||+ ++||..+ |+|||||||||||+|||||||||||+|||++|++|++||||||||++ T Consensus 2 a~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 81 (148) T protein:vir:78 2 AGKLPIVGEVVLPILRGHEDLSEPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) T ss_pred CcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccc Confidence 56999999999999999 8899765 89999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 72 AGLIECEELYEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 72 egl~e~eelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) +|||||||||||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 82 ~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:78 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred cCCcchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 7 >protein:vir:78481 Length: 148 # NCBI annotation: gp19 # Family: family:all:2820 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491590;genbank:gi:157786413;genbank:GeneID:5625633 Probab=100.00 E-value=1.2e-95 Score=541.01 Aligned_cols=138 Identities=54% Similarity=0.954 Sum_probs=135.3 Q ss_pred CCCCchhHHHHHHHhhh--------hcccccc-eeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_021533. 1 MAEMPRIQAVVIPLLRD--------ALVPEKA-AKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQ 71 (138) Q Consensus 1 m~~~prvq~VvlpiLR~--------~l~p~~~-v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~ 71 (138) -+||||||+||+||||+ ++||..+ |+|||||||||||+|||||||||||+|||++|++|++||||||||++ T Consensus 2 a~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 81 (148) T protein:vir:78 2 AGKLPIVGEVVLPILRGHEDLSEPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) T ss_pred CcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccc Confidence 56999999999999999 8899765 89999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcccCCCC Q lcl|NC_021533. 72 AGLIECEELYEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGLRPPRK 138 (138) Q Consensus 72 egl~e~eelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 138 (138) +|||||||||||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||+ T Consensus 82 ~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:78 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred cCCcchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 8 >protein:vir:99005 Length: 170 # NCBI annotation: gp34 # Family: family:all:32655 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655899;genbank:gi:109521471;genbank:GeneID:4157970 Probab=49.20 E-value=0.32 Score=23.31 Aligned_cols=130 Identities=16% Similarity=0.293 Sum_probs=87.0 Q ss_pred CCCC-ch---------hHHHHHHHhhhhcccccceeeeeccCCC---C---------cccCCeeeEEecCCCCCcccchh Q lcl|NC_021533. 1 MAEM-PR---------IQAVVIPLLRDALVPEKAAKVGSWVENI---N---------FREFPLINVRRIGGTRHETRPNQ 58 (138) Q Consensus 1 m~~~-pr---------vq~VvlpiLR~~l~p~~~v~v~tWv~di---d---------yR~fP~vnvRRigG~R~~~~P~~ 58 (138) |+-+ |. |-....+++-+.| +.+.+++|++|= - |-+=|.+-+-|-+|.++-+. . T Consensus 1 Ma~~lPDW~egda~l~v~dl~~q~~qkl~---Pn~~v~~WipdDw~~~~~~~da~pt~~~~Ptl~~~R~~Gq~D~d~--~ 75 (170) T protein:vir:99 1 MADFLPDWWEGPEYLDVEDLFAQHFQKLL---PNVRVCHWIQPDWYIPTGFVDATPTYGTEPTLRLWRQPGQRDDES--T 75 (170) T ss_pred CccccCCccCCcHHHHHHHHHHHHHHHhC---CCceeEeecCcccccccccccccccccccceEEEEecCCccchhh--c Confidence 7665 32 3334556666664 789999999981 1 67779999999999887664 4 Q ss_pred hcCceeeeeeccccCchhhHHHHHHHHHHHH-----HHHhhccCCcccceehhhhhhccccCCccccchhhhhhhhhhcc Q lcl|NC_021533. 59 LSKPVIELTAYHQAGLIECEELYEDALEVLY-----DAVKNQTQTEAGYLHSIKETMGATQFSSPFMDSWRVQGLIALGL 133 (138) Q Consensus 59 ~~~PViEmtaY~~egl~e~eelYe~aLevLY-----~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGi 133 (138) -+-|.+|+-+-+.. --+.-+|-+=|-++|- +.++.--|- -| ++|+.|-.|--+.+-.=.|.--|--+-..-+ T Consensus 76 ~Da~~lq~~vvt~S-r~DS~~l~~fvr~im~a~~~g~~~~~~~qv-v~-i~sv~e~~Gp~~iP~~~~D~r~V~atyevtv 152 (170) T protein:vir:99 76 TDAPLLQFAAVTRS-HGDSIQLIEFVHTVMRALNNGHKIKYNGQL-VG-IKNVGLWLGPQTIPEGPIDEFFVPVTYKFTV 152 (170) T ss_pred cchhhhhhhhhccC-hHHHHHHHHHHHHHHHhhhcCCeeeeCCce-EE-EEEeccccccccCCCCCccceEeeeEEEEEe Confidence 45677777665432 1133455555555553 222211111 12 7888888899998877788888888888899 Q ss_pred cCCCC Q lcl|NC_021533. 134 RPPRK 138 (138) Q Consensus 134 Rppr~ 138 (138) |-||- T Consensus 153 ~~~r~ 157 (170) T protein:vir:99 153 AGKKL 157 (170) T ss_pred ecccC Confidence 99998 No 9 >protein:vir:9576 Length: 131 # NCBI annotation: gp42 # Family: family:all:1271 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862881;genbank:gi:32469473;genbank:GeneID:1461318 Probab=37.31 E-value=0.48 Score=22.35 Aligned_cols=73 Identities=21% Similarity=0.171 Sum_probs=35.3 Q ss_pred eeeccccCc--------hh-----hHHHHHHH-----------------------------HHHHHHHHhhccCCcccce Q lcl|NC_021533. 66 LTAYHQAGL--------IE-----CEELYEDA-----------------------------LEVLYDAVKNQTQTEAGYL 103 (138) Q Consensus 66 mtaY~~egl--------~e-----~eelYe~a-----------------------------LevLY~Avr~Qt~TpaGYl 103 (138) |++|-+-.. -. .|.|-++| -.|--++|+.+..+|+++. T Consensus 1 m~~fAtv~D~~~rwr~Lt~~E~~ra~~LL~~As~~ir~~~p~~~~~l~~~~~~~~~~~~~~~~V~~~~V~Ral~~~~~~~ 80 (131) T protein:vir:95 1 MENFATVEDLKKLWRALKFDEEKRAEALLEVVSHSLRVEAKKVGKDLDGLVATDPSFTMVVKSVTVDVVARTLMTSTDQE 80 (131) T ss_pred CCccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCccchHHHHHHHHHHHHHHhcCCCCCC Confidence 888766211 11 12222322 2356677888888886542 Q ss_pred --ehhhhhhccccCCccccchhhh-----hhhhhhcccCCCC Q lcl|NC_021533. 104 --HSIKETMGATQFSSPFMDSWRV-----QGLIALGLRPPRK 138 (138) Q Consensus 104 --~si~ETmGaTqfsS~f~dsWRv-----qGLI~lGiRppr~ 138 (138) .|..||-|.-++|--|...|.= .=+-+||++.+|- T Consensus 81 G~tq~S~TaG~ys~S~t~~~p~g~lylt~~e~~~LGl~~~r~ 122 (131) T protein:vir:95 81 PMTQVAESALGYSFSGSYLVPGGGLFIKDSELKRLGLKKQRY 122 (131) T ss_pred CceeeeeecccceeeeeeecCCCCceeChHHHHHhCCCCCce Confidence 2333444433333222222110 1135789988887 No 10 >protein:vir:98426 Length: 131 # NCBI annotation: ORF6 # Family: family:all:12105 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q38599;genbank:GeneID:2732810 Probab=30.11 E-value=1.6 Score=19.46 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=73.5 Q ss_pred CC--CCchhHHHHHHHhhhhcccccc-eeeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhh Q lcl|NC_021533. 1 MA--EMPRIQAVVIPLLRDALVPEKA-AKVGSWVENINFREFPLINVRRIGGTRHETRPNQLSKPVIELTAYHQAGLIEC 77 (138) Q Consensus 1 m~--~~prvq~VvlpiLR~~l~p~~~-v~v~tWv~didyR~fP~vnvRRigG~R~~~~P~~~~~PViEmtaY~~egl~e~ 77 (138) |+ -+|..++|+.-+||+.|+-..+ |+|+|=++- =|--.+|.|.|+||.|... ..+.|-+.+-+|... .-++ T Consensus 1 ~~~i~~pda~~v~~~~lr~~l~a~~~~V~V~t~vP~--~RP~rfV~VertgG~~~~~---~~Dr~~L~Vq~W~~t-~~~A 74 (131) T protein:vir:98 1 MPPILMPDAVAVIAGYLRAVLVARGVTVPVGSRVPS--PRPARFVRIERIGGPANTV---VTDRPRLDVHCWGSS-EEDA 74 (131) T ss_pred CCCccCCchhHHHHHHHHHHHHhcCCceEecccCCC--CCCceEEEEEecCCCcCCc---cccceEEEEEecCCC-HHHH Confidence 65 4688999999999998864433 777776653 3567899999999986433 578899999999763 4588 Q ss_pred HHHHHHHHHHHHHHHhhccCCcccceehhhhhhccccCCccc--cchhhhhhhhhhcccCC Q lcl|NC_021533. 78 EELYEDALEVLYDAVKNQTQTEAGYLHSIKETMGATQFSSPF--MDSWRVQGLIALGLRPP 136 (138) Q Consensus 78 eelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f--~dsWRvqGLI~lGiRpp 136 (138) ++|-+.|.+.|..+=+-+- --.-.-.|+=|---|.-|= ++-|..-|=+.+-=... T Consensus 75 ~~La~~vr~~ll~~~~~~g----~~~~~~~e~~gpy~~PD~es~~~Ryq~tv~l~~r~~~~ 131 (131) T protein:vir:98 75 HDLMQLCRALLGAARGSHG----DTVLARPATGGPQFLPDAETGAARWAFTLDITMRGHAL 131 (131) T ss_pred HHHHHHHHHHHhhcccccc----hheeccccCCCCCcCCCCCCCCceeEEEEEEEeeeccC Confidence 8999999888874321110 0011112332322222211 12233222111100000 No 11 >protein:vir:9761 Length: 140 # NCBI annotation: hypothetical protein # Family: family:all:1271 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795523;genbank:gi:28876281;genbank:GeneID:1257822 Probab=25.32 E-value=0.8 Score=21.13 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=35.0 Q ss_pred eeeccccCc-------------hhhHHHHHHHHHHH-----------------------------HHHHhhccCCcccce Q lcl|NC_021533. 66 LTAYHQAGL-------------IECEELYEDALEVL-----------------------------YDAVKNQTQTEAGYL 103 (138) Q Consensus 66 mtaY~~egl-------------~e~eelYe~aLevL-----------------------------Y~Avr~Qt~TpaGYl 103 (138) |++|-+-.. --++.|-++|-+.| -+.|+....+++ T Consensus 1 m~~fATv~Dv~~rwr~Lt~dE~~ra~~LL~dAS~~iR~~~p~~g~~~~~~~~~~~~~~~~~k~V~~~mV~Ral~~~~--- 77 (140) T protein:vir:97 1 MGNFATTDDVILLWRPLSVDELKRANALLKVVSDTLRMEADKVGKDLDKTMVDKPYFVNVIKSVTVDIVARTLMTST--- 77 (140) T ss_pred CCcCCCHHHHHHHhcCCCHhHHHHHHHHHHHHHHHHHHhhhhccCCcchhcccCccchhHHHHHHHHHHHHHhcCCC--- Confidence 888876221 12334455554444 334444443332 Q ss_pred ehhhhhhccccCCc---cccchhhhhh-----------hhhhcccCCCC Q lcl|NC_021533. 104 HSIKETMGATQFSS---PFMDSWRVQG-----------LIALGLRPPRK 138 (138) Q Consensus 104 ~si~ETmGaTqfsS---~f~dsWRvqG-----------LI~lGiRppr~ 138 (138) +.+|+||+|+ +|++|+.-.+ +-+||++.+|- T Consensus 78 ----d~~G~tq~S~TaG~ys~S~T~~np~G~lylt~~e~~~LGl~~~r~ 122 (140) T protein:vir:97 78 ----QGEPMSQESQSALGYTWSGTYLVPGGGLFIKDNELKRLGLKKQRY 122 (140) T ss_pred ----CCCcceeeeeeccchhheeeeecCCCCceeChHHHHHhCCCCCce Confidence 4457777664 5655533322 45789988876 Done!