BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021346.1_cdsid_YP_008061024.1 [gene=259] [protein=terminase] [protein_id=YP_008061024.1] [location=148303..150519] (738 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|26227|lcl|protein:vir:7745 Length: 738 # NCBI annotation: gp2... 1545 0.0 gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: ... 926 0.0 gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 33 0.015 gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: ph... 26 1.5 gi|5082|lcl|protein:vir:95133 Length: 511 # NCBI annotation: hyp... 25 2.6 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 25 2.9 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 25 3.3 gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp... 24 5.1 >gi|26227|lcl|protein:vir:7745 Length: 738 # NCBI annotation: gp239 # Family: family:all:11526 # MgeID: mge:148 # MgeName: Bxz1 # Cross-refs: genbank:acc:NP_818289;genbank:gi:29566722;genbank:GeneID :1259826 Length = 738 Score = 1545 bits (4001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 737/738 (99%), Positives = 737/738 (99%) Query: 1 MAPKRDDDNLPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRMLYPRQMTLLKLIYLE 60 MAPKRDDDNLPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRMLYPRQMTLLKLIYLE Sbjct: 1 MAPKRDDDNLPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRMLYPRQMTLLKLIYLE 60 Query: 61 TETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMVLGRRASK 120 TETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMVLGRRASK Sbjct: 61 TETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMVLGRRASK 120 Query: 121 GIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPSLNLSVTRQFKDIRNTVMDC 180 GIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPSLNLSVTRQFKDIRNTVMDC Sbjct: 121 GIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPSLNLSVTRQFKDIRNTVMDC 180 Query: 181 KYLREHIVGDKITEFFIRTPGDEQTIIENKLSGVDSDREIASIVCKAATATSTSGRGGTG 240 KYLREHIVGDKITEFFIRTPGDEQTIIENKLSGVDSDREIASIVCKAATATSTSGRGGTG Sbjct: 181 KYLREHIVGDKITEFFIRTPGDEQTIIENKLSGVDSDREIASIVCKAATATSTSGRGGTG 240 Query: 241 FVNCYDEYAHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMTYLASSPYSKIGKFYELYQQ 300 FVNCYDEYAHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMTYLASSPYSKIGKFYELYQQ Sbjct: 241 FVNCYDEYAHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMTYLASSPYSKIGKFYELYQQ 300 Query: 301 GSVTLPEYNAREGKLETTSFAERAASQDIDEEEASATVAEPTFLIVQLPSWELYKDYDKS 360 GSVTLPEYNAREGKLETTSFAERAASQDIDEEEASATVAEPTFLIVQLPSWELYKDYDKS Sbjct: 301 GSVTLPEYNAREGKLETTSFAERAASQDIDEEEASATVAEPTFLIVQLPSWELYKDYDKS 360 Query: 361 HQIPMLPGKRRTFPHWPGPIQYKPDPKGTPDERVQERRRLRNPDKFKVERGGQFATVQDA 420 HQIPMLPGKRRTFPHWPGPIQYKPDPKGTPDERVQERRRLRNPDKFKVERGGQFATVQDA Sbjct: 361 HQIPMLPGKRRTFPHWPGPIQYKPDPKGTPDERVQERRRLRNPDKFKVERGGQFATVQDA 420 Query: 421 YLDENKVDQMFLPPSWRDPLFPQDRGKLSMLYRAHADPSRTNANFGFCIAHLEDAPPDEH 480 YLDENKVDQMFLPPSWRDPLFPQDRGKLSMLYRAHADPSRTNANFGFCIAHLEDAPPDEH Sbjct: 421 YLDENKVDQMFLPPSWRDPLFPQDRGKLSMLYRAHADPSRTNANFGFCIAHLEDAPPDEH 480 Query: 481 GYVWPHVIIDVLKVWKPEDFPDHTLDYVQVTEELDNYLTRFPTIEKMSYDQFNSAGLISH 540 GYVWPHVIIDVLKVWKPEDFPDHTLDYVQVTEELDNYLTRFPTIEKMSYDQFNSAGLISH Sbjct: 481 GYVWPHVIIDVLKVWKPEDFPDHTLDYVQVTEELDNYLTRFPTIEKMSYDQFNSAGLISH 540 Query: 541 QKRKFSNIRILQQTFTEQQNQDRFEKFKSALNLGWVHSWKDDFAEDGQSLLELELKFLQE 600 QKRKFSNIRILQQTFTEQQNQDRFEKFKSALNLGWVHSWKDDFAEDGQSLLELELKFLQE Sbjct: 541 QKRKFSNIRILQQTFTEQQNQDRFEKFKSALNLGWVHSWKDDFAEDGQSLLELELKFLQE 600 Query: 601 KVSGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLHTSLDRWYASLSKMSGGSTNAAGLKS 660 KVSGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLH SLDRWYASLSKMSGGSTNAAGLKS Sbjct: 601 KVSGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLHASLDRWYASLSKMSGGSTNAAGLKS 660 Query: 661 GREMERHSIFQANQVEHRAATATMDPMSRYFADQAAREERKAERAAQNRATLERNKLSRA 720 GREMERHSIFQANQVEHRAATATMDPMSRYFADQAAREERKAERAAQNRATLERNKLSRA Sbjct: 661 GREMERHSIFQANQVEHRAATATMDPMSRYFADQAAREERKAERAAQNRATLERNKLSRA 720 Query: 721 QRNMGYGAPPGRTRGRFQ 738 QRNMGYGAPPGRTRGRFQ Sbjct: 721 QRNMGYGAPPGRTRGRFQ 738 >gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: gp242 # Family: family:all:11526 # MgeID: mge:1550 # MgeName: Catera # Cross-refs: genbank:acc:YP_656220;genbank:gi:109393421;genbank:GeneID :4156748 Length = 1007 Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/450 (97%), Positives = 446/450 (99%) Query: 289 SKIGKFYELYQQGSVTLPEYNAREGKLETTSFAERAASQDIDEEEASATVAEPTFLIVQL 348 SKIGKFYELYQQGSVTLPEYNAREGKLETTSFAERAASQDIDEEEASATVAEPTFLIVQL Sbjct: 558 SKIGKFYELYQQGSVTLPEYNAREGKLETTSFAERAASQDIDEEEASATVAEPTFLIVQL 617 Query: 349 PSWELYKDYDKSHQIPMLPGKRRTFPHWPGPIQYKPDPKGTPDERVQERRRLRNPDKFKV 408 PSWELYKDYDKSHQIPMLPGKRRTFPHWPGPIQYKPDPKGTPDERVQERRRLRNPDKFKV Sbjct: 618 PSWELYKDYDKSHQIPMLPGKRRTFPHWPGPIQYKPDPKGTPDERVQERRRLRNPDKFKV 677 Query: 409 ERGGQFATVQDAYLDENKVDQMFLPPSWRDPLFPQDRGKLSMLYRAHADPSRTNANFGFC 468 ERGGQFATVQDAYLDENKVDQMFLPPSWRDPLFPQDRGKLSMLYRAHADPSRTNANFGFC Sbjct: 678 ERGGQFATVQDAYLDENKVDQMFLPPSWRDPLFPQDRGKLSMLYRAHADPSRTNANFGFC 737 Query: 469 IAHLEDAPPDEHGYVWPHVIIDVLKVWKPEDFPDHTLDYVQVTEELDNYLTRFPTIEKMS 528 IAHLEDAPPDEHGYVWPHVIIDVLKVWKP+DFP+HTLDYVQVTEELD YLTRFPTIEKMS Sbjct: 738 IAHLEDAPPDEHGYVWPHVIIDVLKVWKPQDFPEHTLDYVQVTEELDAYLTRFPTIEKMS 797 Query: 529 YDQFNSAGLISHQKRKFSNIRILQQTFTEQQNQDRFEKFKSALNLGWVHSWKDDFAEDGQ 588 YDQFNSAGLISHQKRKF+NIRILQQTFTEQQNQDRFEKFKSALNLGWVH ++DDFAEDGQ Sbjct: 798 YDQFNSAGLISHQKRKFTNIRILQQTFTEQQNQDRFEKFKSALNLGWVHCYRDDFAEDGQ 857 Query: 589 SLLELELKFLQEKVSGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLHTSLDRWYASLSKM 648 SLLELELKFLQEK+SGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLH SLDRWYASLSKM Sbjct: 858 SLLELELKFLQEKISGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLHASLDRWYASLSKM 917 Query: 649 SGGSTNAAGLKSGREMERHSIFQANQVEHRAATATMDPMSRYFADQAAREERKAERAAQN 708 SGGSTNAAGLKSGREMERHSIFQANQ EHRAATATMDPMSRYFADQAAREERKAERAAQN Sbjct: 918 SGGSTNAAGLKSGREMERHSIFQANQAEHRAATATMDPMSRYFADQAAREERKAERAAQN 977 Query: 709 RATLERNKLSRAQRNMGYGAPPGRTRGRFQ 738 RATLERNKLSRAQRNMGYGAPPGRTRGRFQ Sbjct: 978 RATLERNKLSRAQRNMGYGAPPGRTRGRFQ 1007 Score = 603 bits (1555), Expect = e-174, Method: Compositional matrix adjust. Identities = 287/289 (99%), Positives = 287/289 (99%) Query: 1 MAPKRDDDNLPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRMLYPRQMTLLKLIYLE 60 MA KRDDDNLPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRMLYPRQMTLLKLIYLE Sbjct: 1 MALKRDDDNLPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRMLYPRQMTLLKLIYLE 60 Query: 61 TETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMVLGRRASK 120 TETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMVLGRRASK Sbjct: 61 TETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMVLGRRASK 120 Query: 121 GIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPSLNLSVTRQFKDIRNTVMDC 180 GIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPSLNLSVTRQFKDIRNTVMDC Sbjct: 121 GIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPSLNLSVTRQFKDIRNTVMDC 180 Query: 181 KYLREHIVGDKITEFFIRTPGDEQTIIENKLSGVDSDREIASIVCKAATATSTSGRGGTG 240 KYLREHIVGDKITEFFIRTPGDEQTIIENKLSGVDSDREIASIVCKAATATSTSGRGGTG Sbjct: 181 KYLREHIVGDKITEFFIRTPGDEQTIIENKLSGVDSDREIASIVCKAATATSTSGRGGTG 240 Query: 241 FVNCYDEYAHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMTYLASSPYS 289 FVNCYDEYAHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMTYLASSPY Sbjct: 241 FVNCYDEYAHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMTYLASSPYC 289 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 32.7 bits (73), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 37/170 (21%) Query: 1 MAPKRDDDNLPNFRPLDSFREAVRNGRPW------DSIVDFVVHPSFC-GRMLYPRQMTL 53 MA KR D P++ F E V G IV+F G L+P Q + Sbjct: 1 MARKRKLD------PIELFDELVYEGLAQVKTNHVIGIVEFAEQYLLAPGDRLFPPQRAI 54 Query: 54 LKLIYLETETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMV 113 L+ +Y E + + +L ++ WA+ V + DR ++ MV Sbjct: 55 LRALY--NEPLPEDELAILQRWAEQ--------DVTTWVPDR------------SYVNMV 92 Query: 114 L--GRRASKGIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPS 161 L GRR K ++ I L +L + +HY + G I V+A S Sbjct: 93 LECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGLLSGSPIAIFVIARS 142 Score = 28.5 bits (62), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 19/108 (17%) Query: 487 VIIDVLKVWKPEDFPDHT-------LDYVQVTEELDNYLTRFPTIEKMSYDQFNSAGLIS 539 VI+D L VWKP D++ + Y+ + E+L + + I S+D + S I Sbjct: 400 VIVDGLLVWKPYSDRDNSGRGIQRIVSYLDIEEKLVQ-ICQARHISLCSFDSYQSQSTI- 457 Query: 540 HQKRKFSNIRILQQTFTEQQNQDRFEKFKSALNLG---------WVHS 578 Q+ IR ++ + T + + LN G W HS Sbjct: 458 -QRLHAHGIRSIEMSTTNTAQLSYYNLTRQLLNEGRLILPRDSTWTHS 504 >gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: phage terminase large subunit # Family: family:all:1730 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516188;genbank:gi:89885991;genbank:GeneID :3964379 Length = 475 Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 113 VLGRRASKGIMGGIVTTERIA 133 +LGR+ G GG++ ERIA Sbjct: 111 LLGRKTDNGWQGGLIPGERIA 131 >gi|5082|lcl|protein:vir:95133 Length: 511 # NCBI annotation: hypothetical protein ORF016 # Family: family:all:7264 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293423;genbank:gi:148912844;genbank:Ge neID:5228208 Length = 511 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Query: 420 AYLDENKVDQMFLPPSWRDPLFPQD----RGKLSMLYRAHADPSRTN 462 A+ +E + Q+ P W L P G+LS + RA DPSR N Sbjct: 16 AFAEEECLKQLPTTPVWYG-LEPNSYSDFGGELSTVARAPIDPSRQN 61 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 18/36 (50%) Query: 10 LPNFRPLDSFREAVRNGRPWDSIVDFVVHPSFCGRM 45 +PN +P +++V G + FVVHP G M Sbjct: 344 VPNIKPSGKGKDSVIQGIQYMQSYRFVVHPRVKGLM 379 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 25.0 bits (53), Expect = 3.3, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 260 TGEEIYDAFQPALDQFGKDAMTYLASSPYSKIGKFYELYQQ 300 T + I AF A +A + S+P + G+FY+++++ Sbjct: 172 TWDSIEGAFSNAGVDVADNAYAFAMSTPGAPSGRFYDIHRR 212 >gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp2, terminase # Family: family:all:523 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456732;genbank:gi:157168375;interpro:I PR005021;uniprot:Q9MBK3;genbank:GeneID:5580375 Length = 542 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 637 SLDRWYASLSKMSGGSTNAAGLKSGREMERHSIFQA 672 ++ +W+ + GG +++A L E+ H+ FQ+ Sbjct: 172 AMPKWFVVATNRGGGRSHSAELAMLDELREHTDFQS 207 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.134 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,785 Number of Sequences: 514 Number of extensions: 15849 Number of successful extensions: 42 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 14 length of query: 738 length of database: 206,069 effective HSP length: 78 effective length of query: 660 effective length of database: 165,977 effective search space: 109544820 effective search space used: 109544820 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)