BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021339.1_cdsid_YP_008060240.1 [gene=7] [protein=terminase large subunit] [protein_id=YP_008060240.1] [location=2376..4022] (548 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 407 e-115 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 407 e-115 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 402 e-114 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 395 e-112 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 385 e-109 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 366 e-103 gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hyp... 238 9e-65 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 234 2e-63 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 114 4e-27 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 100 5e-23 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 92 2e-20 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 92 2e-20 gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2... 92 2e-20 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 33 0.006 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 33 0.007 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 32 0.019 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 31 0.045 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 30 0.062 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 30 0.091 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 29 0.15 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 27 0.47 gi|13482|lcl|protein:vir:9757 Length: 471 # NCBI annotation: put... 26 1.2 gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hyp... 25 2.3 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 25 2.3 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 25 2.4 gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hyp... 25 3.4 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 23 9.7 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 237/590 (40%), Positives = 331/590 (56%), Gaps = 66/590 (11%) Query: 11 EIEALEPDFLGPTWQKDAFGQWVLPKYTLGWQIAGWCAQWLRAEDG--GPWKF------- 61 E+ P +GP+WQK G+W LP+ TLGW + W ++++ G P + Sbjct: 9 ELAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNRLATLIALS 68 Query: 62 -------------TKEQLRFVLHWYAVDSTGRFTARKGVLQRLKGWGKDPLLAVLCLVEL 108 T EQ+R VL WYAVD G++ R+GV++RLKGWGKDP A LCL EL Sbjct: 69 EAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFTAALCLAEL 128 Query: 109 VGPSRFSHWDENGEPVGEPHPQAWVQVTAVNQSQTTNTMSLIPSLMSDAFKAHFDIKDGA 168 GP FSH+D +G PVG+P AW+ V AV+Q QT NT SL P ++S KA + + Sbjct: 129 CGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKAEYGLDVNR 188 Query: 169 VLIRANGGKQRLEAVTSSYRALEGKRTTFTLLNETHHWVSG-----NNGHKMYETIDGNA 223 +I + G R+EA TSS ++EG R TF + NET W G N GH M E I+GN Sbjct: 189 FIIYSAAGG-RIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIEGNM 247 Query: 224 TK-KDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLYDSVEAHAKTPLT--- 279 TK + SR L+I NA++PG ++VAE+ + Y K+ G ++D G +YD++EA A TP++ Sbjct: 248 TKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVSEIP 307 Query: 280 -----PDALRIVIPKI-------RGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAE 327 P+ I K+ RGD+ WL +D II+S+L T + SRR +LNQ+ A Sbjct: 308 PQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKFLNQVNAA 367 Query: 328 EDALYGPAEWDVLR-----------NEALTLQPGDEIVLGFDGGKTHDATALVAIRVRDM 376 ED+ P EW+ + E LQ GD I LGFDG K++D TALV RV D Sbjct: 368 EDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALVGCRVSDG 427 Query: 377 AAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETY 436 F++ +W+ PQ EVPR +VD++VHSAF + V AF ADV +E+Y+ +W TY Sbjct: 428 LLFVIDIWD----PQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWGRTY 483 Query: 437 GDGLAVK-SPVGRDAIGFDMRSSLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNARR 495 L V SP + + FDMR K ERL ++ + ++ HDG+ LR+H LNA+R Sbjct: 484 KKKLKVNASP--NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKR 541 Query: 496 RTNNY-GVSFGKESRESPRKVDAYAALMLAHEALYDLRARGKKQKARSGR 544 NY ++ K +++S +K+DA +LA A D +KARSGR Sbjct: 542 HPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLM---SKKARSGR 588 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 407 bits (1045), Expect = e-115, Method: Compositional matrix adjust. Identities = 236/590 (40%), Positives = 333/590 (56%), Gaps = 65/590 (11%) Query: 11 EIEALEPDFLGPTWQKDAFGQWVLPKYTLGWQIAGWCAQWLR-----------------A 53 E+ P +GPTWQK G W LP+ TLGW + W ++++ + Sbjct: 9 ELAPSPPHIIGPTWQKTTDGAWHLPEKTLGWGVLAWLSEYVNTPGGHDDPNRLRFLIELS 68 Query: 54 EDGGPWKF-----TKEQLRFVLHWYAVDSTGRFTARKGVLQRLKGWGKDPLLAVLCLVEL 108 E G P+ T EQ+R VL WYAVD G++ R+GV++RLKGWGKDP A LCL EL Sbjct: 69 EAGIPFNENMFIPTDEQVRLVLWWYAVDDKGQYIYREGVIRRLKGWGKDPFTAALCLAEL 128 Query: 109 VGPSRFSHWDENGEPVGEPHPQAWVQVTAVNQSQTTNTMSLIPSLMSDAFKAHFDIKDGA 168 GP FSH+D +G PVG+ W+ V AV+Q QT NT SL P ++S KA +++ Sbjct: 129 CGPVAFSHFDADGNPVGKRRNAPWITVAAVSQDQTKNTFSLFPVMISKKLKAEYNLDVNR 188 Query: 169 VLIRANGGKQRLEAVTSSYRALEGKRTTFTLLNETHHWVSG-----NNGHKMYETIDGNA 223 +I ++GG R+EA TSS A+EG R TF + NET W G N GH M E I+GN Sbjct: 189 FIIYSDGGAGRIEAATSSPAAMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIEGNM 248 Query: 224 TK-KDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLYDSVEAHAKTPLT--- 279 TK + SR L+I NA++PG ++V E+ +++ IA +++D G LYD++EA A TP++ Sbjct: 249 TKVEGSRTLSICNAHIPGTETVGEKSYNNWLDIATDKSVDTGLLYDALEAPADTPISEIP 308 Query: 280 -----PDALRIVIPKI-------RGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAE 327 P+ I K+ RGD+ WL +D II+S+L T + + SRR +LNQ+ A Sbjct: 309 SQKEDPEGFERGIEKLREGVLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLNQVNAA 368 Query: 328 EDALYGPAEWDVL-----------RNEALTLQPGDEIVLGFDGGKTHDATALVAIRVRDM 376 ED+ P EW+ +E + LQ GD I LGFDG K++D TALV RV D Sbjct: 369 EDSWLSPQEWNRCFADPEKYLERRGHEFVPLQRGDRITLGFDGSKSNDWTALVGCRVSDG 428 Query: 377 AAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETY 436 F++ +W+ PQ EVPR +VD++VHSAFK + V AF ADV +E+Y+ W TY Sbjct: 429 LLFVIDIWD----PQKYGGEVPREDVDAKVHSAFKHYDVVAFRADVKEFEAYVDSWGRTY 484 Query: 437 GDGLAVK-SPVGRDAIGFDMRSSLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNARR 495 L V SP + + FDMR K ERL ++ + ++ HDG+ L +H +NA+R Sbjct: 485 KKKLKVNASP--NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNAVLSQHVMNAKR 542 Query: 496 RTNNY-GVSFGKESRESPRKVDAYAALMLAHEALYDLRARGKKQKARSGR 544 Y ++ K +++S +K+DA +LA A D +KARSGR Sbjct: 543 HPTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLM---SKKARSGR 589 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 402 bits (1033), Expect = e-114, Method: Compositional matrix adjust. Identities = 228/561 (40%), Positives = 323/561 (57%), Gaps = 36/561 (6%) Query: 11 EIEALEPDFLGPTWQKDAFGQWVLPKYTLGWQIAGWCAQWLRA----EDGGPWKFTKEQL 66 E+ P +GPTW + G W LP+ TLGW + W A +++ G P+ T EQ Sbjct: 9 ELAPSPPHVIGPTWARTVDGGWYLPEKTLGWGVLNWWAAYVKTPGGEHAGSPFMPTLEQA 68 Query: 67 RFVLHWYAVDSTGRFTARKGVLQRLKGWGKDPLLAVLCLVELVGPSRFSHWDENGEPVGE 126 RF L WYAVD G + R+G+L+RLKGWGKDP A L L EL GP FSH+D +G PVG+ Sbjct: 69 RFTLWWYAVDDNGNYVYREGILRRLKGWGKDPFAAALSLAELCGPVAFSHFDADGNPVGK 128 Query: 127 PHPQAWVQVTAVNQSQTTNTMSLIPSLMSDAFKAHFDIKDGAVLIRANGGKQRLEAVTSS 186 P AW+ + AV+Q QT NT SL P ++S K + + +I + G R+EA TSS Sbjct: 129 PRHAAWITIAAVSQDQTKNTFSLFPIMISKQLKEDYGLLVNRFIIYSEAGG-RIEAATSS 187 Query: 187 YRALEGKRTTFTLLNETHHWVSG-----NNGHKMYETIDGNATK-KDSRYLAITNAYLPG 240 ++EG R TF + NET W +G N+GH M+ I+GN TK +R LAI NA++PG Sbjct: 188 PASVEGNRPTFVIENETQWWGAGPGGEINDGHAMHGAIEGNLTKIPGARRLAICNAHIPG 247 Query: 241 EDSVAERMRESYMKIAEGRAMDVGFLYDSVEAHAKTPLT--------PDALRIVIPKI-- 290 D+VAE+ ++Y I G+A+D G LYD++EA A TP++ P+ ++ I K+ Sbjct: 248 NDTVAEKDWDAYQDILSGKAVDTGMLYDALEAPADTPVSEIPSQREDPEGYQLGIKKLRE 307 Query: 291 -----RGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDALYGPAEWDVLRNEAL 345 RGD+ WL VD I+ S+LD + + SRR +LNQI A ED+ P EW+ R + Sbjct: 308 GIEIARGDSYWLPVDEILMSILDIKNSITESRRKFLNQINAHEDSWISPNEWN--RCQPS 365 Query: 346 TLQP---GDEIVLGFDGGKTHDATALVAIRVRDMAAFLLGLWEKPDGPQGENWEVPRWEV 402 T+QP GD I LGFDG K++D TALVA RV D FL+ +W D G EVPR +V Sbjct: 366 TIQPLTKGDRITLGFDGSKSNDWTALVACRVDDGMLFLIKVWNPEDYESG---EVPREDV 422 Query: 403 DSEVHSAFKQFKVQAFYADVALWESYISEWSETYGDGLAVKSPVGRDAIGFDMRSSLKLV 462 D+ V S F + V AF ADV +E+Y+ +W + + V + G + I FDMR K Sbjct: 423 DATVRSMFASYDVVAFRADVKEFEAYVDQWGRDFRKKIQVNATPG-NPIAFDMRGQTKRF 481 Query: 463 TMAHERLMRSIFDKKLAHDGDRSLRRHALNARRRTNNY-GVSFGKESRESPRKVDAYAAL 521 ER + ++ ++++ HDG+ L++H NARR Y ++ K S++S +K+DA Sbjct: 482 AFDCERFLDAVIEQEVFHDGNPVLKQHVCNARRHPTTYDAIAIRKASKDSGKKIDAAVCA 541 Query: 522 MLAHEALYDLRARGKKQKARS 542 +LA A D + + R+ Sbjct: 542 VLAFGARQDFLMSKRNRTRRA 562 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 395 bits (1016), Expect = e-112, Method: Compositional matrix adjust. Identities = 234/592 (39%), Positives = 327/592 (55%), Gaps = 68/592 (11%) Query: 11 EIEALEPDFLGPTWQKDAFGQWVLP--KYTLGWQIAGWCAQWLRAEDG--GPWKF----- 61 E+ P +GP+WQK G W LP K TLGW + W ++++ G P + Sbjct: 9 ELAPSPPHIIGPSWQKTVDGDWHLPDPKMTLGWGVLKWLSEYVNTPGGHDDPNRLKVLIS 68 Query: 62 ---------------TKEQLRFVLHWYAVDSTGRFTARKGVLQRLKGWGKDPLLAVLCLV 106 T EQ+R VL WYAVD G++ R+GV++RLKGWGKDP A LCL Sbjct: 69 LSEAGLLENENMFIPTDEQVRLVLWWYAVDEKGQYVYREGVIRRLKGWGKDPFTAALCLA 128 Query: 107 ELVGPSRFSHWDENGEPVGEPHPQAWVQVTAVNQSQTTNTMSLIPSLMSDAFKAHFDIKD 166 EL GP FSH+DE G+ +G+P P AW+ V AV+Q QT NT SL P ++S K + + Sbjct: 129 ELCGPVAFSHFDETGQAIGKPRPAAWITVAAVSQDQTKNTFSLFPVMISKKLKTEYGLDV 188 Query: 167 GAVLIRANGGKQRLEAVTSSYRALEGKRTTFTLLNETHHWVSG-----NNGHKMYETIDG 221 +I + G R+EA TSS ++EG R TF + NET W G N GH M E I+G Sbjct: 189 NRFIIYSAAGG-RIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKANEGHAMAEVIEG 247 Query: 222 NATK-KDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLYDSVEAHAKTPLT- 279 N TK + SR L+I NA++PG ++VAE+ + + G+++D G +YD++EA A TP++ Sbjct: 248 NMTKVEGSRTLSICNAHIPGTETVAEKAYVEWQDVQSGKSVDTGMMYDALEAPADTPISE 307 Query: 280 -------PDALRIVIPKI-------RGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIV 325 PD R I K+ RGD+ WL +D II+S+L T + + SRR +LNQ+ Sbjct: 308 IPSEKENPDGFREGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLNQVN 367 Query: 326 AEEDALYGPAEW-----------DVLRNEALTLQPGDEIVLGFDGGKTHDATALVAIRVR 374 A ED+ P EW D + E L G +I LGFDG K++D TALV RV Sbjct: 368 AAEDSWLSPQEWNRCFADPDKYLDKMGFELAPLDRGQKITLGFDGSKSNDWTALVGCRVS 427 Query: 375 DMAAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSE 434 D F++ +W+ PQ EVPR VD+ VHSAF ++ V AF ADV +E+Y+ W Sbjct: 428 DGLLFVIDIWD----PQKYGGEVPREFVDAAVHSAFSRYDVVAFRADVKEFEAYVDSWGR 483 Query: 435 TYGDGLAVK-SPVGRDAIGFDMRSSLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNA 493 TY L V SP + + FDMR K ERL ++ + ++ HDG+ LR+H LNA Sbjct: 484 TYKKKLKVNASP--NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNA 541 Query: 494 RRRTNNY-GVSFGKESRESPRKVDAYAALMLAHEALYDLRARGKKQKARSGR 544 +R Y ++ K +++S +K+DA +LA A D +KAR+GR Sbjct: 542 KRHPTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLM---SKKARTGR 590 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 385 bits (990), Expect = e-109, Method: Compositional matrix adjust. Identities = 220/548 (40%), Positives = 318/548 (58%), Gaps = 32/548 (5%) Query: 21 GPTWQKDAFGQWVLPKYTLGWQIAGWCAQWLRAEDG-GPWKFTKEQLRFVLHWYAVDSTG 79 GPTW++ G W LP+ TLGWQI W +++ + G GP+ T EQ RF+ WYAVD G Sbjct: 18 GPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAGDGPFVPTLEQARFIAWWYAVDDQG 77 Query: 80 RFTARKGVLQRLKGWGKDPLLAVLCLVELVGPSRFSHWDENGEPVGEPHPQAWVQVTAVN 139 ++ R+G L+R+KGWGKDP++ L L EL GP FSH+D+NG PVG+ AW+ + AV+ Sbjct: 78 KYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDDNGNPVGKARHAAWITIAAVS 137 Query: 140 QSQTTNTMSLIPSLMSDAFKAHFDIKDGAVLIRANGGKQRLEAVTSSYRALEGKRTTFTL 199 Q QT NT SL P ++S ++ + + +I + G RLEA T+S ++EG R TF + Sbjct: 138 QDQTKNTFSLFPIMVSKRLRSEYGLSVNRFIIYSEIGG-RLEAATASPASMEGNRPTFVV 196 Query: 200 LNETHHWVSG-----NNGHKMYETIDGNATK-KDSRYLAITNAYLPGEDSVAERMRESYM 253 NET W G N GH+M E I+GN TK +R L+I NA+ PG+D+VAER ++++ Sbjct: 197 QNETQWWGVGPGGEVNGGHQMAEVIEGNMTKVPGARTLSICNAHRPGDDTVAERSYQNWL 256 Query: 254 KIAEGRAMDVGFLYDSVEAHAKTPL-------------TPDALRIV--IPKIRGDAIWLN 298 I G +D G LYD++EA A TP+ T +++ + RGD+IWL Sbjct: 257 DILAGEVIDTGILYDALEAPADTPVSEIPPPSEDEPGYTAGVAKLLEGLGVARGDSIWLP 316 Query: 299 VDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDALYGPAEWDVLRNEAL-TLQPGDEIVLGF 357 +D I+ SVL SRR +LNQ+ A ED+ PA+WD + +L L GD+I LGF Sbjct: 317 LDDILMSVLSAKNDIIESRRKFLNQVNASEDSWLAPADWDKCHSTSLRPLTKGDKITLGF 376 Query: 358 DGGKTHDATALVAIRVRDMAAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKVQA 417 DG K++D TALVA RV D A FL+ W + P G EVP+ +VD+ V S +++V A Sbjct: 377 DGSKSNDWTALVACRVEDGAVFLIDYWNPENYPSG---EVPKEDVDAVVRSMKDKYEVVA 433 Query: 418 FYADVALWESYISEWSETYGDGLAVKSPVGRDAIGFDMRSSLKLVTMAHERLMRSIFDKK 477 F ADV +E+Y+ +W + + + V + G + + FDMR K + ER ++ +++ Sbjct: 434 FRADVKEFEAYVDQWGQLFRRTIKVNASPG-NPVAFDMRGQTKRFALDCERFADAVLEQE 492 Query: 478 LAHDGDRSLRRHALNARRRTNNY-GVSFGKESRESPRKVDAYAALMLAHEALYDLRARGK 536 L HD + ++ H NA R Y +S K S+ S RK+DA +LA A D Sbjct: 493 LVHDNNPVMKAHITNAHRHPTIYDAISIRKPSKASKRKIDAAVCSVLAFGARQDYLM--- 549 Query: 537 KQKARSGR 544 +K RSG+ Sbjct: 550 SKKNRSGK 557 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 366 bits (940), Expect = e-103, Method: Compositional matrix adjust. Identities = 216/551 (39%), Positives = 312/551 (56%), Gaps = 37/551 (6%) Query: 21 GPTWQKDAFGQWVLPKYTLGWQIAGWCAQWLRAEDG-GPWKFTKEQLRFVLHWYAVDSTG 79 GPTW++ G W LP+ TLGWQI W +++ + G GP+ T EQ RF+ WYAVD G Sbjct: 18 GPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAGDGPFVPTLEQARFIAWWYAVDDQG 77 Query: 80 RFTARKGVLQRLKGWGKDPLLAVLCLVELVGPSRFSHWDENGEPVGEPHPQAWVQVTAVN 139 ++ R+G L+R+KGWGKDP++ L L EL GP FSH+D+NG PVG+P AWV V AV+ Sbjct: 78 KYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDDNGNPVGKPRHAAWVTVAAVS 137 Query: 140 QSQTTNTMSLIPSLMSDAFKAHFDIKDGAVLIRANGGKQRLEAVTSSYRALEGKRTTFTL 199 Q QT NT L P ++S K + + +I + G RLEA T+S ++EG R TF + Sbjct: 138 QQQTVNTFGLFPIMVSKKLKTEYGLSVNRFIIYSEIGG-RLEAATASPASMEGNRPTFVV 196 Query: 200 LNETHHWVSG-----NNGHKMYETIDGNATK-KDSRYLAITNAYLPGEDSVAERMRESYM 253 NET W G N+GH+M E I+GN TK +R L+I NA+ PG+D+VAE +++ Sbjct: 197 QNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAHRPGDDTVAEMSYLNWL 256 Query: 254 KIAEGRAMDVGFLYDSVEAHAKTPLT--------PDALRIVIPKI-------RGDAIWLN 298 I G A+D G LYD++EA A TP++ P+ + ++ RGD+IWL Sbjct: 257 DILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLP 316 Query: 299 VDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDALYGPAEWDVLRNEALTLQP---GDEIVL 355 +D I+ SVL SRR +LNQ+ A E++ P+EWD RN + L P G+ I L Sbjct: 317 LDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWD--RNHDINLPPLRKGERITL 374 Query: 356 GFDGGKTHDATALVAIRVRDMAAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKV 415 GFDG ++D TAL A RV D A FL+ +W P+ +G +VPR +VD+ V S F+++ V Sbjct: 375 GFDGSLSNDHTALTACRVEDGALFLVKVW-VPEKYEGH--KVPRQDVDAYVRSMFEKYDV 431 Query: 416 QAFYADVALWESYISEWSETYGDGLAVKSPVGRDAIGFDMRSSLKLVTMAHERLMRSIFD 475 ADV +E + W + + L + + G + + FDMR K + ER ++ Sbjct: 432 VGMRADVKEFEQSVDAWGQDFRRKLRINASPG-NPVAFDMRGQQKRFALDCERFRDAVLA 490 Query: 476 KKLAHDGDRSLRRHALNARRRTNNY-GVSFGKESRESPRKVDAYAALMLAHEALYDLRAR 534 ++ HD + L+ H NA + Y +S K +ES RK+DA +LA + D Sbjct: 491 GEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLL- 549 Query: 535 GKKQKARSGRG 545 K+ +G+G Sbjct: 550 ---SKSNTGKG 557 >gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:1551 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958275;genbank:gi:41057249;genbank:GeneID :2732854 Length = 536 Score = 238 bits (608), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 167/530 (31%), Positives = 246/530 (46%), Gaps = 43/530 (8%) Query: 54 EDGGPWKFTKEQLRFVLHWYAVDS-TGRFTARKGVLQRLKGWGKDPLLAVLCLVELVGPS 112 +DG P+ T+EQ F+L +Y + TGR +G+L R +GWGK P + + L E Sbjct: 11 DDGEPFIPTQEQAEFLLRFYELHPVTGRRVIHRGLLSRPRGWGKSPFVGAIALAEACADV 70 Query: 113 RFSHWDENGEPVGEP-HP--QAWVQVTAVNQSQTTNT-MSLIPSLMSDAFKAHF--DIKD 166 WD GEP+G P H V++ AV ++QT NT + L+ + + D+ D Sbjct: 71 VADGWDAYGEPIGRPWHSVRTPLVRIAAVTEAQTDNTWIPLLEMARGGSLSTDYGLDVLD 130 Query: 167 GAVLIRANGGKQRLEAVTSSYRALEGKRTTFTLLNETHHWVSGNNGHKMYETIDGNATKK 226 + + + + +TSS +++G F L++T W N G ++ +T+ NA K Sbjct: 131 TVIYLP----RGEISPITSSASSVKGDPACFASLDQTEEWRESNGGIRLAKTMRFNAAKL 186 Query: 227 DSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLYDSVEAHAKTPLT------- 279 + NA+ PGE SVAE Y I +GR+ G L D EA T ++ Sbjct: 187 GGSIIETPNAFTPGEGSVAENSAADYQAIIDGRSRARGILVDHREAPGDTDMSDEQSLVA 246 Query: 280 ------------PDALRIVIPKIRGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAE 327 PD + P W ++ + DT+ P R +LNQI Sbjct: 247 GLRYAYGDSSDHPDGCVLHDPPC--GPGWSPIERLTGEFWDTSNDPQDLRADFLNQITHA 304 Query: 328 EDALYGPAEWDVLRNEALTLQPGDEIVLGFDGGKTH-----DATALVAIRVRDMAAFLLG 382 DA E + +QPGD IVLGFDG + DATAL+ R+ D F LG Sbjct: 305 SDAWLSQPEVRASSDLGKVVQPGDRIVLGFDGSRKRSRGVTDATALIGCRLSDGHLFTLG 364 Query: 383 LWEKPD----GPQGE--NWEVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETY 436 +WE+P GP G W+VP EV + V AF + V YAD A WES++++W + Sbjct: 365 VWEQPPRLELGPDGRPVEWQVPVVEVLAAVAEAFATYDVVGMYADPAKWESHVADWEAAF 424 Query: 437 GDGLAVKSPVGRDAIGFDMRSSLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNARRR 496 G L VK + L+ A E+ ++ + +L HDG +L RH LN+RRR Sbjct: 425 GPRLQVKVTRNHPIEWWMTGGRSTLIVRALEKFHTALTECELTHDGSSALVRHLLNSRRR 484 Query: 497 TNNYGVSFGKESRESPRKVDAYAALMLAHEALYDLRARGKKQKARSGRGY 546 G+ KE+ +SP K+DA A +LA + D A G +A G+ Sbjct: 485 KTRSGIQIMKENPDSPNKIDAAVAAVLAWQCRLDAIAAGLAVEAEEMGGF 534 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 234 bits (598), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/429 (35%), Positives = 230/429 (53%), Gaps = 36/429 (8%) Query: 142 QTTNTMSLIPSLMSDAFKAHFDIKDGAVLIRANGGKQRLEAVTSSYRALEGKRTTFTLLN 201 T NT SL P ++S K + + +I + G RLEA T+S ++EG R TF + N Sbjct: 481 NTKNTFSLFPIMVSKKLKTEYGLSVNRFIIYSEIGG-RLEAATASPASMEGNRPTFVVQN 539 Query: 202 ETHHWVSG-----NNGHKMYETIDGNATKKD-SRYLAITNAYLPGEDSVAERMRESYMKI 255 ET W G N+GH+M E I+GN TK D +R L+I NA+ PG+D+VAE +++ I Sbjct: 540 ETQWWGVGPGGEVNDGHQMAEVIEGNMTKVDGARTLSICNAHRPGDDTVAEMSYLNWLDI 599 Query: 256 AEGRAMDVGFLYDSVEAHAKTPLT--------PDALRIVIPKI-------RGDAIWLNVD 300 G A+D G LYD++EA A TP++ P+ + ++ RGD+IWL +D Sbjct: 600 LAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPLD 659 Query: 301 SIIQSVLDTTIAPSRSRRMWLNQIVAEEDALYGPAEWDVLRNEALTLQP---GDEIVLGF 357 I+ SVL SRR +LNQ+ A E++ P+EWD RN + L P G+ I LGF Sbjct: 660 DILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWD--RNHDINLPPLRKGERITLGF 717 Query: 358 DGGKTHDATALVAIRVRDMAAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKVQA 417 DG ++D TAL A RV D A FL+ +W P+ +G +VPR +VD+ V S F+++ V Sbjct: 718 DGSLSNDHTALTACRVEDGALFLVKVW-VPEKYEGH--KVPRQDVDAYVRSMFEKYDVVG 774 Query: 418 FYADVALWESYISEWSETYGDGLAVKSPVGRDAIGFDMRSSLKLVTMAHERLMRSIFDKK 477 ADV +E + W + + L + + G + + FDMR K + ER ++ + Sbjct: 775 MRADVKEFEQSVDAWGQDFRRKLKINASPG-NPVAFDMRGQQKRFALDCERFRDAVLAGE 833 Query: 478 LAHDGDRSLRRHALNARRRTNNY-GVSFGKESRESPRKVDAYAALMLAHEALYDLRARGK 536 + HD + L+ H NA + Y +S K +ES RK+DA +LA + D Sbjct: 834 VKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLL--- 890 Query: 537 KQKARSGRG 545 K+ +G+G Sbjct: 891 -SKSNTGKG 898 Score = 140 bits (353), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 116/210 (55%), Gaps = 16/210 (7%) Query: 21 GPTWQKDAFGQWVLPKYTLGWQIAGWCAQWLRAEDG-GPWKFTKEQLRFVLHWYAVDSTG 79 GPTW++ G W LP+ TLGWQI W +++ + G GP+ T EQ RF+ WYAVD G Sbjct: 18 GPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAGDGPFVPTLEQARFIAWWYAVDDQG 77 Query: 80 RFTARKGVLQRLKGWGKDPLLAVLCLVELVGPSRFSHWDENGEPVGEPHPQAWVQVTAVN 139 ++ R+G L+R+KGWGKDP++ L L EL GP FSH+D+NG PVG+ AWV + AV+ Sbjct: 78 KYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDDNGNPVGKTRHAAWVTIAAVS 137 Query: 140 QSQTTNTMSLIPSLMSDAFKAHFDIKDGAVLIRANGGKQRLEAVTSSYRALEGKRTTFTL 199 Q Q + +P+ + D+ G ++ ++G R++ T LEG T Sbjct: 138 QDQPLALNTEVPT--PSGWTTVGDLSVGDYVLGSDGQPHRVQRETP---VLEGLATYVVR 192 Query: 200 LNE--------THHWVSGN-NGH-KMYETI 219 ++ +H W + GH YET+ Sbjct: 193 FDDGTEITASASHGWTTQRLTGHGDSYETV 222 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 114 bits (284), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 137/307 (44%), Gaps = 24/307 (7%) Query: 221 GNATKKDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLYDS---VEAHAKTP 277 G+A + +L I+ A P D + E ++ G A D Y S Sbjct: 194 GSAARNQPMFLIISTAG-PDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDH 252 Query: 278 LTPDALRIVIPKIRGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDALYGPAEW 337 L PD R P LN D + +T A R R L+Q V W Sbjct: 253 LDPDVWRACNPSYD----ILNPDDFKAAAQRSTEASFRIYR--LSQFVRGASTWLPHGLW 306 Query: 338 DVLRNEALTLQPGDEIVLGFDGGKTHDATALVAIRVRDMAAFLLGLWEKPDGPQGENWEV 397 D L + L+PGDE+VLGFDG D+TALVA R+RD+ F+LG WE P +W V Sbjct: 307 DSLAADDDPLEPGDEVVLGFDGSWKGDSTALVACRIRDLKVFVLGHWEAP--ADDAHWRV 364 Query: 398 PRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETYGDGLAVKSPVGRDAIGFDMRS 457 P +V E+H+A ++V+ AD WE + DG V++ F S Sbjct: 365 PMADVREELHTALDVYRVRNLVADPYRWEETLDNLE---ADGFPVEA--------FPTNS 413 Query: 458 SLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNARRRTNNYGVSFGKESRESPRKVDA 517 ++V A + + + D +L+HDG+ +L RH NA + + G KE S RK+D Sbjct: 414 LARMVP-ATQAVYDACRDGRLSHDGNPALGRHIGNAVLKEDARGARITKEHASSRRKIDL 472 Query: 518 YAALMLA 524 A++LA Sbjct: 473 AVAMVLA 479 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 100 bits (248), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 27/309 (8%) Query: 221 GNATKKDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLYDSVEAHAKTPLTP 280 G+A + +L I+ A P D + E ++ G A D Y S P Sbjct: 197 GSAARNQPMFLIISTAG-PDPDGPFAALCEQGERVNSGEADDPTLFYRS-----WGPKLG 250 Query: 281 DALRIVIPKI--RGDAIW--LNVDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDALYGPAE 336 + + + P++ R + + LN D + +T A R R L+Q V Sbjct: 251 ETVDHLDPEVWARCNPSYDILNPDDFKAAAQRSTEASFRIYR--LSQFVRGASTWLPHGL 308 Query: 337 WDVLR-NEALTLQPGDEIVLGFDGGKTHDATALVAIRVRDMAAFLLGLWEKPDGPQGENW 395 WD L ++ L+PGDE+V GFDG D+TALVA RVRD+ F+LG WE P +W Sbjct: 309 WDSLAADDDDPLEPGDEVVCGFDGSWKGDSTALVACRVRDLRVFVLGHWEAP--ADDIHW 366 Query: 396 EVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETYGDGLAVKSPVGRDAIGFDM 455 VP +V +HSA ++V+ AD WE + +G V++ F Sbjct: 367 RVPMADVREALHSALDTYRVRNLVADPYRWEETLDNLE---AEGFPVEA--------FPT 415 Query: 456 RSSLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNARRRTNNYGVSFGKESRESPRKV 515 S ++V A + + + D +L+HDG+ +L RH NA + + G KE S RK+ Sbjct: 416 NSLARMVP-ATQAVYDACRDGRLSHDGNPALARHIGNAVLKEDARGARITKEFGASRRKI 474 Query: 516 DAYAALMLA 524 D A++LA Sbjct: 475 DLAVAMVLA 483 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:GeneI D:4157223 Length = 545 Score = 91.7 bits (226), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 134/531 (25%), Positives = 208/531 (39%), Gaps = 75/531 (14%) Query: 56 GGPWKFTKEQLRFVLHWYAVDSTGRFTA------RKGVLQRLKGWGKDPLLAVLCLVEL- 108 G P + E+ V Y + G A R GV R KG K A +C VEL Sbjct: 37 GQPARLDDEKRALVYRLYELYPRGHHLAGRRRFERAGVELR-KGVAKTEFAAWICGVELH 95 Query: 109 -VGPSRFSHWDENGEPVGEPHPQAWVQVTAVNQSQTTN-TMSLIPSLMSDAFKAH-FDI- 164 P R +D G PVG P + + AV + Q + ++ ++ + FDI Sbjct: 96 PEAPVRCDGFDAAGNPVGRPVRSPVIPMMAVTEEQVSELAFGVLKYILENGPDVDLFDIS 155 Query: 165 KDGAVLIRANGGKQRLE-AVTSSYRALEGKRTTFTLLNETHHWVSGNNGHKMYETIDGNA 223 K+ V + +GG+ AV+++ + +G RTTF +E H + +ET+ N Sbjct: 156 KERIVRLSPSGGEDGFAVAVSNAPGSRDGARTTFQHFDEPHRLFMPRH-RDAHETMLQNM 214 Query: 224 TKK---DSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLY----------DSV 270 K+ D L + A PG+ S+ E + IA G D + D Sbjct: 215 PKRPMEDPWTLYTSTAGQPGQGSIEEDVLAEAESIARGERQDPSLFFFRRWAGDEHDDLS 274 Query: 271 EAHAKTPLTPDALRIVIPKIRGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDA 330 + DA + G+ + I + T I + R++LN+ Sbjct: 275 TVEKRVAAVADATGPI-----GEWGPGQFERIAKDYDRTGIDRAYWERVYLNRWRKS--- 326 Query: 331 LYGPAEWDVLRNEAL--TLQPGDEIVLGFDGGKTHDATALVAIRVRDMAAFLLGLWEKPD 388 G +D+ R T+ G + GFDG + DATA+V + LLG WE+P+ Sbjct: 327 --GSQAFDMTRLVQCDETVPDGAFVTAGFDGSRWRDATAVVVTEIATGRQMLLGCWERPE 384 Query: 389 GPQGENWEVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETYGDGLAVKSPVGR 448 E WEVP EV + V +F+V Y D W+S I+ W+ + D + V+ VG Sbjct: 385 --NVEEWEVPEHEVTALVVDMMSRFEVWRMYCDPWGWDSTIAAWAGRFPDRV-VEWAVGG 441 Query: 449 DAIGFDMRSSLKLVTMAHE---------------RLMRSIFDKKLAHDGDRSLRRHALNA 493 SL+ V A + + R F + + H G R L Sbjct: 442 GG-------SLRRVAAATQGYADALATGDAALAANVWRPKFVEHMGHAGRREL------- 487 Query: 494 RRRTNNYGVSFGKESRESPR---KVDAYAALMLAHEALYDLRARGKKQKAR 541 + ++ G ++ R K DA A ML+ EA D R G + + + Sbjct: 488 -KLVDDTGQPLWVMQKQDGRLADKFDAAMAGMLSWEACVDARRDGARPRPK 537 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:GeneI D:4157626 Length = 545 Score = 91.7 bits (226), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 134/531 (25%), Positives = 208/531 (39%), Gaps = 75/531 (14%) Query: 56 GGPWKFTKEQLRFVLHWYAVDSTGRFTA------RKGVLQRLKGWGKDPLLAVLCLVEL- 108 G P + E+ V Y + G A R GV R KG K A +C VEL Sbjct: 37 GQPARLDDEKRALVYRLYELYPRGHHLAGRRRFERAGVELR-KGVAKTEFAAWICGVELH 95 Query: 109 -VGPSRFSHWDENGEPVGEPHPQAWVQVTAVNQSQTTN-TMSLIPSLMSDAFKAH-FDI- 164 P R +D G PVG P + + AV + Q + ++ ++ + FDI Sbjct: 96 PEAPVRCDGFDAAGNPVGRPVRSPVIPMMAVTEEQVSELAFGVLKYILENGPDVDLFDIS 155 Query: 165 KDGAVLIRANGGKQRLE-AVTSSYRALEGKRTTFTLLNETHHWVSGNNGHKMYETIDGNA 223 K+ V + +GG+ AV+++ + +G RTTF +E H + +ET+ N Sbjct: 156 KERIVRLSPSGGEDGFAVAVSNAPGSRDGARTTFQHFDEPHRLFMPRH-RDAHETMLQNM 214 Query: 224 TKK---DSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVGFLY----------DSV 270 K+ D L + A PG+ S+ E + IA G D + D Sbjct: 215 PKRPMEDPWTLYTSTAGQPGQGSIEEDVLAEAESIARGERQDPSLFFFRRWAGDEHDDLS 274 Query: 271 EAHAKTPLTPDALRIVIPKIRGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQIVAEEDA 330 + DA + G+ + I + T I + R++LN+ Sbjct: 275 TVEKRVAAVADATGPI-----GEWGPGQFERIAKDYDRTGIDRAYWERVYLNRWRKS--- 326 Query: 331 LYGPAEWDVLRNEAL--TLQPGDEIVLGFDGGKTHDATALVAIRVRDMAAFLLGLWEKPD 388 G +D+ R T+ G + GFDG + DATA+V + LLG WE+P+ Sbjct: 327 --GSQAFDMTRLVQCDETVPDGAFVTAGFDGSRWRDATAVVVTEIATGRQMLLGCWERPE 384 Query: 389 GPQGENWEVPRWEVDSEVHSAFKQFKVQAFYADVALWESYISEWSETYGDGLAVKSPVGR 448 E WEVP EV + V +F+V Y D W+S I+ W+ + D + V+ VG Sbjct: 385 --NVEEWEVPEHEVTALVVDMMSRFEVWRMYCDPWGWDSTIAAWAGRFPDRV-VEWAVGG 441 Query: 449 DAIGFDMRSSLKLVTMAHE---------------RLMRSIFDKKLAHDGDRSLRRHALNA 493 SL+ V A + + R F + + H G R L Sbjct: 442 GG-------SLRRVAAATQGYADALATGDAALAANVWRPKFVEHMGHAGRREL------- 487 Query: 494 RRRTNNYGVSFGKESRESPR---KVDAYAALMLAHEALYDLRARGKKQKAR 541 + ++ G ++ R K DA A ML+ EA D R G + + + Sbjct: 488 -KLVDDTGQPLWVMQKQDGRLADKFDAAMAGMLSWEACVDARRDGARPRPK 537 >gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817340;genbank:gi:29565768;genbank:GeneID :1259002 Length = 545 Score = 91.7 bits (226), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 127/491 (25%), Positives = 198/491 (40%), Gaps = 57/491 (11%) Query: 84 RKGVLQRLKGWGKDPLLAVLCLVEL--VGPSRFSHWDENGEPVGEPHPQAWVQVTAVNQS 141 R GV R KG K A +C VEL P R +D G PVG P + + AV + Sbjct: 71 RAGVELR-KGVAKTEFAAWICGVELHPEAPVRCDGFDAAGNPVGRPVRSPVIPMMAVTEE 129 Query: 142 QTTN-TMSLIPSLMSDAFKAH-FDI-KDGAVLIRANGGKQRLE-AVTSSYRALEGKRTTF 197 Q + ++ ++ + A FDI K+ V + +GG+ AV+++ + +G RTTF Sbjct: 130 QVSELAFGVLKYILENGPDADLFDISKERIVRLSPSGGEDGFAVAVSNAPGSRDGARTTF 189 Query: 198 TLLNETHHWVSGNNGHKMYETIDGNATKK---DSRYLAITNAYLPGEDSVAERMRESYMK 254 +E H + +ET+ N K+ D L + A PG+ S+ E + Sbjct: 190 QHFDEPHRLFMPRH-RDAHETMLQNMPKRPMEDPWTLYTSTAGQPGQGSIEEDVLAEAES 248 Query: 255 IAEGRAMDVGFLY----------DSVEAHAKTPLTPDALRIVIPKIRGDAIWLNVDSIIQ 304 IA G D + D + DA + G+ + I + Sbjct: 249 IARGERQDPSLFFFRRWAGDEHDDLSTVEKRVAAVADATGPI-----GEWGPGQFERIAK 303 Query: 305 SVLDTTIAPSRSRRMWLNQIVAEEDALYGPAEWDVLRNEAL--TLQPGDEIVLGFDGGKT 362 T I + R++LN+ G +D+ R T+ G + GFDG + Sbjct: 304 DYDRTGIDRAYWERVYLNRWRKS-----GSQAFDMTRLVQCDETVPDGAFVTAGFDGSRW 358 Query: 363 HDATALVAIRVRDMAAFLLGLWEKPDGPQGENWEVPRWEVDSEVHSAFKQFKVQAFYADV 422 DATA+V + LLG WE+P+ E WEVP EV + V +F+V Y D Sbjct: 359 RDATAVVVTEIATGRQMLLGCWERPE--NVEEWEVPEHEVTALVVDMMSRFEVWRMYCDP 416 Query: 423 ALWESYISEWSETYGD--------GLAVKSPVGRDAIGF-DMRSSLKLVTMAHERLMRSI 473 W+S I+ W+ + D G V G+ D ++ V A+ + R Sbjct: 417 WGWDSTIAAWAGRFPDRVVEWAVGGGGSLRRVAAATQGYADALATGDAVLAAN--VWRPK 474 Query: 474 FDKKLAHDGDRSLRRHALNARRRTNNYGVSFGKESRESPR---KVDAYAALMLAHEALYD 530 F + + H G R L + ++ G ++ R K DA A ML+ EA D Sbjct: 475 FVEHMGHAGRREL--------KLVDDTGQPLWVMQKQDGRLADKFDAAMAGMLSWEACVD 526 Query: 531 LRARGKKQKAR 541 R G + + + Sbjct: 527 ARRDGARPRPK 537 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 33.5 bits (75), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%) Query: 438 DGLAVKSPVGRDAIGFDMRS----SLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNA 493 DG + +S + + F ++ ++K + A+ + IF K H G SL N Sbjct: 362 DGQSGQSILTSEMKDFKLKEPILPTVKEIINANSLWEQGIFQKNFCHSGQPSLSTVVTNC 421 Query: 494 RRRTNNYGVSFGKESRESPRKVDAYAALMLAHEALYDLRARGKKQ 538 +R FG +S+ + + +LAH A + + + K+Q Sbjct: 422 DKRNIGTSGGFGYKSQFDDMDISLMDSALLAHWACSNNKPKKKQQ 466 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 33.5 bits (75), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%) Query: 438 DGLAVKSPVGRDAIGFDMRS----SLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNA 493 DG + +S + + F ++ ++K + A+ + IF K H G SL N Sbjct: 362 DGQSGQSILTSEMKDFKLKEPILPTVKEIINANSLWEQGIFQKNFCHSGQPSLSTVVTNC 421 Query: 494 RRRTNNYGVSFGKESRESPRKVDAYAALMLAHEALYDLRARGKKQ 538 +R FG +S+ + + +LAH A + + + K+Q Sbjct: 422 DKRNIGTSGGFGYKSQFDDMDISLMDSALLAHWACSNNKLKKKQQ 466 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 32.0 bits (71), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 321 LNQIVAEEDALYGPAEWDVLRNEALTLQ--PGDEIVLGFDGGKTHDATALVAIRVRDM 376 LN VA +DA + W + +LTL+ G +L FD + D A+V + R++ Sbjct: 322 LNIWVAAKDAFFNLVNWQKCEDRSLTLERFEGHTCILAFDLARKLDLNAMVRLFTREI 379 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 30.8 bits (68), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 31/138 (22%) Query: 205 HWVSGNNGHKMYETIDGNATKKDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVG 264 HW+ + K+ DG K+ ++PG ++K+ EG +D Sbjct: 707 HWIPESALAKLDRLNDGRFAKE----------FVPG----------GWLKVTEGDVLDFD 746 Query: 265 FLYDSVEAHAKTPLTPDALRIVIPKIRGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQI 324 +YD +EA AK R I + GDA + D +IQ + T + N Sbjct: 747 VVYDDIEADAK--------RFTI--LGGDADQWSSDPVIQEIEKRTYL-YEDIFAYKNDF 795 Query: 325 VAEEDALYGPAEWDVLRN 342 D+++ EW + +N Sbjct: 796 AHMSDSMHRIFEWTLAKN 813 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 30.4 bits (67), Expect = 0.062, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 458 SLKLVTMAHERLMRSIFDKKLAHDGDRSLRRHALNARRRTNNYGVSFGKESRESPRKVDA 517 ++K + +A+ + I+ K + H G SL + A N +R FG S + Sbjct: 387 TVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMNISL 446 Query: 518 YAALMLAH 525 + +LAH Sbjct: 447 MDSALLAH 454 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 29.6 bits (65), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 31/138 (22%) Query: 205 HWVSGNNGHKMYETIDGNATKKDSRYLAITNAYLPGEDSVAERMRESYMKIAEGRAMDVG 264 HW+ + K+ DG K+ ++PG ++K+ EG +D Sbjct: 376 HWIPESALAKLDRLNDGRFAKE----------FVPG----------GWLKVTEGDVLDFD 415 Query: 265 FLYDSVEAHAKTPLTPDALRIVIPKIRGDAIWLNVDSIIQSVLDTTIAPSRSRRMWLNQI 324 +YD +EA +K R I + GDA + D +IQ + T + N Sbjct: 416 VVYDDIEADSK--------RFTI--LGGDADQWSSDPVIQEIEKRTYL-YEDIFAYKNDF 464 Query: 325 VAEEDALYGPAEWDVLRN 342 D+++ EW + +N Sbjct: 465 AHMSDSMHRIFEWTLAKN 482 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 28.9 bits (63), Expect = 0.15, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 476 KKLAHDGDRSLRRHALNARRRTNNYG-VSFGKESRESPRKVDAYAALMLAH 525 K++ HD + + NA + TN++G + K+SR +++D A+ + AH Sbjct: 503 KQIVHDENNLMTWCVQNAEKDTNSFGEIKISKKSR--FKRIDPLASCIFAH 551 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 27.3 bits (59), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 473 IFDKKLAHDGDRSLRRHALNARRRTNNYGVSFGKESRESPRKVDAYAALMLAHE 526 I++K+L D + ALN TN G+ R+S +K+D + A + AH+ Sbjct: 500 IYEKRLITDNPLFVY-CALNVVVVTNINGMK-APSKRQSKKKIDGFVAFLCAHK 551 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 177 KQRLEAVTSSYRALEGKRTTFTLLNETH 204 + + + +T + + LEGK F L +E H Sbjct: 194 QNKFKVLTKNTKGLEGKNPYFVLNDELH 221 >gi|13482|lcl|protein:vir:9757 Length: 471 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795519;genbank:gi:28876285;genbank:GeneID :1257826 Length = 471 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 471 RSIFDKKLAHDGDRSLRRHALNARRRTNNYGVSFGKESRESPRKVDAYAALMLAHEALYD 530 + I + + H SL N +R FG +S R + + +LAH Y Sbjct: 401 QGIMQETICHSDQPSLTAVVTNCEKRQIGSNGGFGYKSLYDDRDISLMDSALLAHWICYT 460 Query: 531 LRARGKKQKA 540 + + K++ + Sbjct: 461 TKPKRKQRTS 470 >gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hypothetical protein ORF012 # Family: family:all:144 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294520;genbank:gi:149408241;genbank:Ge neID:5237115 Length = 515 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 230 YLAITNAYLPGEDSVAERMRESYMK 254 Y A TN Y PG + V R R +M+ Sbjct: 198 YRATTNPYGPGHNWVKARFRLPHMR 222 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 350 GDEIVLGFDGGKTHDATAL 368 G ++ +GFDG +T+D T+ Sbjct: 395 GRDVFIGFDGSQTNDNTSF 413 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 14/19 (73%) Query: 350 GDEIVLGFDGGKTHDATAL 368 G ++ +GFDG +T+D T+ Sbjct: 394 GRDVFIGFDGSQTNDNTSF 412 >gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224036;genbank:gi:62327323;genbank:GeneID :5176819 Length = 423 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 346 TLQPGDEIVLGFDGGKTHDATALVAIR--VRDMAAFLLGLWEKPD 388 T+QPG+ + +G D H A+ + R V A L+ +++ PD Sbjct: 246 TIQPGETLYIGQDFNVGHMASTVYVQREYVWHAVAELVDMFDTPD 290 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 23.1 bits (48), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 180 LEAVTSSYRALEGKRTTFTLLNETHHWVSGNNGHKMY-ETIDGNATKKDSRYLAITNAYL 238 L+ V + + G + + L++E H + NG M E G A + + + ++ Sbjct: 174 LKIVAADENTVTGSKASVLLVDECHRLGTKENGGSMLREAAGGLAARPEGFIIKLSTQSS 233 Query: 239 PGEDSVAERMRESYMKIAEGRAMD---VGFLYDSVEA--HAKTPLTPDALRIVIPKI 290 V + E + + +G D G LY+ +A +T + +++V P + Sbjct: 234 EPPAGVFKDDLELFRNVRDGVVTDKRRFGVLYEHPKAWLEDGRAMTLEGIKLVNPSL 290 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.134 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,950 Number of Sequences: 514 Number of extensions: 12992 Number of successful extensions: 142 Number of sequences better than 100.0: 29 Number of HSP's better than 100.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 37 length of query: 548 length of database: 206,069 effective HSP length: 76 effective length of query: 472 effective length of database: 167,005 effective search space: 78826360 effective search space used: 78826360 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)