BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021311.1_cdsid_YP_008052181.1 [gene=7] [protein=terminase large subunit] [protein_id=YP_008052181.1] [location=1904..4567] (887 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 1839 0.0 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 967 0.0 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 149 1e-37 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 129 1e-31 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 129 1e-31 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 129 1e-31 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 127 5e-31 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 126 1e-30 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 125 2e-30 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 119 2e-28 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 115 1e-27 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 115 3e-27 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 113 9e-27 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 111 3e-26 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 110 8e-26 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 107 5e-25 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 101 4e-23 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 101 4e-23 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 99 2e-22 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 98 4e-22 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 96 1e-21 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 96 1e-21 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 96 1e-21 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 95 3e-21 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 95 4e-21 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 94 7e-21 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 87 6e-19 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 87 9e-19 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 86 1e-18 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 77 7e-16 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 76 2e-15 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 63 1e-11 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 63 1e-11 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 63 1e-11 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 63 1e-11 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 63 1e-11 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 62 3e-11 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 52 2e-08 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 47 1e-06 gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: p... 47 1e-06 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 45 3e-06 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 45 4e-06 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 43 2e-05 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 43 2e-05 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 43 2e-05 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 42 3e-05 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 40 9e-05 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 40 9e-05 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 40 9e-05 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 39 4e-04 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 38 4e-04 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 36 0.002 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 35 0.004 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 35 0.004 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 34 0.008 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 34 0.009 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 33 0.014 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 33 0.015 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 33 0.021 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 32 0.031 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 32 0.035 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 32 0.039 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 30 0.14 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 29 0.22 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 26 1.6 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 26 2.4 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 26 2.6 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 25 3.6 gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: Pa... 25 4.0 gi|11632|lcl|protein:vir:78892 Length: 228 # NCBI annotation: Ts... 25 4.6 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 25 5.5 gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF... 24 9.3 gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: OR... 24 9.5 gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF... 24 9.5 gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF... 24 9.5 gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: sim... 24 9.5 gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF... 24 9.5 gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF... 24 9.5 gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF... 24 9.5 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 1839 bits (4764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 884/887 (99%), Positives = 886/887 (99%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR Sbjct: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 Query: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHA 120 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHA Sbjct: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHA 120 Query: 121 ADGTLARVSYVSERHWRDCFSVQFADGAELVASDHHLWAVNDRLKGERVIDTAELYRTQT 180 ADGTLARVSYVSERHWRDCFSVQFADGAELVASDHHLWAVNDRLKGERVIDTAELYRTQT Sbjct: 121 ADGTLARVSYVSERHWRDCFSVQFADGAELVASDHHLWAVNDRLKGERVIDTAELYRTQT 180 Query: 181 YGARGDRRYTVTVPEALDRDEAPLPLDPYILGAWLGDGTATRAEFTSEDPEIFAAIEAAG 240 YGARGDRRYTVTVPEALDRDEAPLPLDPYILGAWLGDGTATRAEFTSEDPEIFAAIEAAG Sbjct: 181 YGARGDRRYTVTVPEALDRDEAPLPLDPYILGAWLGDGTATRAEFTSEDPEIFAAIEAAG 240 Query: 241 YPLSYDYASGNARTRGAKGLVAVLRKMGVLGAKHVPQDYLIGSRAQRLALLQGLMDTDGS 300 YPLSYDYASGNARTRGAKGLVAVLRKMGVLGAKHVPQDYLIGSRAQRLALLQGLMDTDGS Sbjct: 241 YPLSYDYASGNARTRGAKGLVAVLRKMGVLGAKHVPQDYLIGSRAQRLALLQGLMDTDGS 300 Query: 301 VITGPNTPRVEFCNTNRDLAEAALFLARSLGWKATLKESRARLNGKDCGPRFRVSWTAYS 360 VITGPNTPRVEFCNTNRDLAEAALFLARSLGWKATLKESRARLNGKDCGPRFRVSWTAYS Sbjct: 301 VITGPNTPRVEFCNTNRDLAEAALFLARSLGWKATLKESRARLNGKDCGPRFRVSWTAYS 360 Query: 361 DMSPFRLQRKSDKLAAAPARATRARTNTITSVTPVPTVETVCIQIDHPSHVFLAGKSLTP 420 DMSPFRLQRKS+KLAAAPARATRARTNTITSVTPVPTVETVCIQIDHPSHVFLAGKSLTP Sbjct: 361 DMSPFRLQRKSEKLAAAPARATRARTNTITSVTPVPTVETVCIQIDHPSHVFLAGKSLTP 420 Query: 421 THNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVD 480 THNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVD Sbjct: 421 THNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVD 480 Query: 481 YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQ 540 YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQ Sbjct: 481 YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQ 540 Query: 541 PLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPH 600 PLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPH Sbjct: 541 PLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPH 600 Query: 601 ANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVF 660 ANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVF Sbjct: 601 ANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVF 660 Query: 661 KSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRL 720 KSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRL Sbjct: 661 KSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRL 720 Query: 721 NDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEK 780 NDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEAD+KRFTILGGDADQWSSDPVIQEIEK Sbjct: 721 NDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADAKRFTILGGDADQWSSDPVIQEIEK 780 Query: 781 RTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNL 840 RTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNL Sbjct: 781 RTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNL 840 Query: 841 IRPDKPDRDMAAKRIDAVPTAVMATNAFYTRGGDYDSVYEEREALSV 887 IRPDKPDRDMAAKRIDAVPTAVMATNAFYTRG DYDSVYEEREALSV Sbjct: 841 IRPDKPDRDMAAKRIDAVPTAVMATNAFYTRGNDYDSVYEEREALSV 887 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/464 (99%), Positives = 463/464 (99%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK Sbjct: 93 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 152 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM Sbjct: 153 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 212 Query: 544 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP 603 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP Sbjct: 213 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP 272 Query: 604 ALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSN 663 ALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSN Sbjct: 273 ALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSN 332 Query: 664 KDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDG 723 KDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDG Sbjct: 333 KDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDG 392 Query: 724 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTY 783 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTY Sbjct: 393 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTY 452 Query: 784 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRP 843 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRP Sbjct: 453 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRP 512 Query: 844 DKPDRDMAAKRIDAVPTAVMATNAFYTRGGDYDSVYEEREALSV 887 DKPDRDMAAKRIDAVPTAVMATNAFYTRG DYDSVYEEREALSV Sbjct: 513 DKPDRDMAAKRIDAVPTAVMATNAFYTRGNDYDSVYEEREALSV 556 Score = 202 bits (514), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 116/196 (59%), Positives = 132/196 (67%), Gaps = 26/196 (13%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR Sbjct: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 Query: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHA 120 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGK T +L G + Y+ Sbjct: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGK-----TELLAG----------IMLYLLV 105 Query: 121 ADGTLARVSYVSERHWRDCFSVQFADGAELVASDHHLWAVNDRLKGERVIDTAELYRTQT 180 ADG + Y R + ++ F A++V L + RLK V+D Y+ + Sbjct: 106 ADGEQSGEIYGVARDKKQA-ALAFDVAAQMVKFSPIL---SKRLK---VVD----YKKRI 154 Query: 181 YGARGDRRYTVTVPEA 196 Y A+ + Y V +A Sbjct: 155 YDAKTNSFYDVIAADA 170 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 149 bits (376), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 136/447 (30%), Positives = 199/447 (44%), Gaps = 64/447 (14%) Query: 22 VPRANKAQAFFEEILVHTKGQYTRKKFIL---EDWQRDDIV-----RPLFGRVEYS---D 70 VP +A+ V +G+Y ++ L + W +D ++ L G V +S D Sbjct: 58 VPTLEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDD 117 Query: 71 EFGCYKRRYEIAWIELAR-KNGKALDVETPILTGNGWKKMGDIQVGDYVHAADGTLARVS 129 + AW+ +A + L + T + T +GW +GD+ VGDYV +DG RV Sbjct: 118 NGNPVGKTRHAAWVTIAAVSQDQPLALNTEVPTPSGWTTVGDLSVGDYVLGSDGQPHRVQ 177 Query: 130 YVSE-RHWRDCFSVQFADGAELVASDHHLWAVNDRLKGER------VIDTAELYRTQTYG 182 + + V+F DG E+ AS H W RL G + T EL +T T Sbjct: 178 RETPVLEGLATYVVRFDDGTEITASASHGWTTQ-RLTGHGDSYETVTVTTEELAQTVT-N 235 Query: 183 ARGDRRYTVTVPEALDRDEAPLPLDPYILGAWLGDGTATRAEFTSEDPEIFAAIEAAGYP 242 ++G +R+ + V ++ LPLDP+ LG WLGDG AT S D + P Sbjct: 236 SKGRKRHRIPV-VGMELPNQELPLDPWFLGLWLGDG-ATSDSTVSFDYRLRDEYATLLKP 293 Query: 243 LSYDYAS------------------GNARTRGAKGLVAVLRKMGVLGAKHVPQDYLIGSR 284 L ++ + N RT+ K + ++LRK GVLG KH+P Y+ Sbjct: 294 LVQEFQTVVWDNPVPGTNVGTFRIKNNDRTQDDKSIRSLLRKAGVLGNKHIPAAYMQAGT 353 Query: 285 AQRLALLQGLMDTDGSVITGPNTPRVEFCNTNRDLAEAALFLARSLGWKATLKES----- 339 QR LL+GL+D+DG + + R F N NR+L L LG++ T++E Sbjct: 354 DQRFELLRGLIDSDGGI---DSVGRAYFVNANRNLVYQFQELVVGLGFRCTVREHGGDGA 410 Query: 340 -RARLNGKDCGPRFRVSWTAYSDMSPFRLQRKSDKLAAAPARATRARTNTITSVTPVPTV 398 RA N G RVS AY F QR + R++ + SVTPV +V Sbjct: 411 LRAEFN---PGNAVRVSNLAYK----FERQRPY-------SSRNRSQHRWVESVTPVESV 456 Query: 399 ETVCIQIDHPSHVFLAGKSLTPTHNTE 425 CI ID H+F +S THNT+ Sbjct: 457 PVKCIGIDTEDHLFQVSRSRILTHNTK 483 Score = 26.2 bits (56), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 734 WLKVTEGDVLDFDVVYDDIEA 754 WL + GD +D V+YD +EA Sbjct: 596 WLDILAGDAIDTGVLYDALEA 616 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 131/486 (26%), Positives = 212/486 (43%), Gaps = 47/486 (9%) Query: 406 DHPSHVFLAGKSLTPTH-NTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAA 463 D+P+ +A S+ + T L+AGI+L LV + Q+ +I A ++QAA+ F++A Sbjct: 42 DNPAGTDMAILSIARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAV 101 Query: 464 QMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADE---ILAW 520 +MV +P L + + + K++ N Y ++A+ K+ G +P DE + Sbjct: 102 KMVNLNPKLQEIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGP 161 Query: 521 QDGGMWDSLRTGMGSGARVQPLM-VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHI 579 QD + D++ T GA PL+ V ST A ND A L ++ ++ D HI Sbjct: 162 QDDFI-DAITTA--QGAHENPLLIVISTQAAND----ADLLSIWIDDAVKSKD----PHI 210 Query: 580 FVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQW 639 ++ P + D E W ANPALG F S + M +QA +A P E FR LNQ Sbjct: 211 VCHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQR 270 Query: 640 QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICYLFPQSD 698 ++ ++ W+ C + + W+ GLDL+AR DL ++ D Sbjct: 271 VSTVSPFISRSVWELCGEMPINTPRK----------WYAGLDLSARNDLTALVIAGEADD 320 Query: 699 GSVDLLWRHWIPESAL---AKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEAD 755 G D+ W P+ L K DR + +E G L+ T G +D+ V DI Sbjct: 321 GVWDVFPFFWTPQKTLEERTKTDRAPYDVWVRE----GLLRTTPGASVDYSFVVADIAEI 376 Query: 756 SKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLR 815 F + D+W D ++ + L + + F M ++ + L +R Sbjct: 377 IGDFDLTSMAFDRWRIDQFRKDADA-IGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVR 435 Query: 816 HHGNPLARFC-FSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNA----FYT 870 H +P+ C +A + AA + L D+ A RID + M+ A Sbjct: 436 HGMHPVLTMCAVNAVVVKDAAGNRKL------DKSKATGRIDGMVAMTMSVGAANGEVTE 489 Query: 871 RGGDYD 876 +GGD+D Sbjct: 490 QGGDFD 495 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 132/493 (26%), Positives = 214/493 (43%), Gaps = 47/493 (9%) Query: 399 ETVCIQIDHPSHVFLAGKSLTPTH-NTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAA 456 E + D+P+ +A S+ + T L+AGI+L LV + Q+ +I A ++QAA Sbjct: 35 EFILAVYDNPAGTDMAILSIARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAA 94 Query: 457 LAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADE 516 + F++A +MV +P L + + + K++ N Y ++A+ K+ G +P DE Sbjct: 95 IVFNLAVKMVNLNPKLQEIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDE 154 Query: 517 ---ILAWQDGGMWDSLRTGMGSGARVQPLM-VASTTAGNDTEGFAGLKHREMERVMEDPD 572 + QD + D++ T GA PL+ V ST A ND A L ++ ++ D Sbjct: 155 TGQVRGPQDDFI-DAITTA--QGAHENPLLIVISTQAAND----ADLLSIWIDDAVKSKD 207 Query: 573 NPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFR 632 HI ++ P + D E W ANPALG F S + M +QA +A P E FR Sbjct: 208 ----PHIVCHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFR 263 Query: 633 QFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSIC 691 LNQ ++ ++ W+ C + + W+ GLDL+AR DL ++ Sbjct: 264 NLNLNQRVSTVSPFISRSVWELCGEMPINTPRK----------WYAGLDLSARNDLTALV 313 Query: 692 YLFPQSDGSVDLLWRHWIPESAL---AKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVV 748 DG D+ W P+ L K DR + +E G L+ T G +D+ V Sbjct: 314 IAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVRE----GLLRTTPGASVDYSFV 369 Query: 749 YDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEW 808 DI F + D+W D ++ + L + + F M ++ + Sbjct: 370 VADIAEIIGDFDLTSIAFDRWRIDQFRKDADA-IGLSLPLVEFGQGFKDMGPAVDTLESL 428 Query: 809 TLAKNLRHHGNPLARFC-FSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNA 867 L +RH +P+ C +A + AA + L D+ A RID + M+ A Sbjct: 429 MLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRKL------DKSKATGRIDGMVAMTMSVGA 482 Query: 868 ----FYTRGGDYD 876 +GGD+D Sbjct: 483 ANGEVTEQGGDFD 495 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 129 bits (324), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 116/449 (25%), Positives = 199/449 (44%), Gaps = 36/449 (8%) Query: 428 AGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYD 487 AG+ LY D E E+Y A +KQA F A M K +P+L++ + + Sbjct: 126 AGVALYCFACDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNASNMNR 185 Query: 488 AKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVAST 547 + + ++ + + GS+P DE ++ ++ TGM GAR QPLM A T Sbjct: 186 PEDGARFEPLIGNPGD--GSSPHCAVVDEYHEHATDALYTTMLTGM--GARRQPLMWAIT 241 Query: 548 TAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNE-ECWPHANPA 604 TAG + EG K RE+ ++ P++ F I+ T E D W + + ANP Sbjct: 242 TAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIY-----TVDEGDDWTDPQVLEKANPN 296 Query: 605 LGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNK 664 +G + E + Q A+NN F+ LN W ++ + + +W C+ +K Sbjct: 297 IGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWVSARSAYFNLVSWQSCE------DK 350 Query: 665 DL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSV---DLLWRHWIPESALAKLDR 719 L + F GQ C DLA + D+ S+ L+ + DG + R W+P + +++ Sbjct: 351 SLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEK 410 Query: 720 LNDGRFAKEF---VPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQ 776 D R A+ F V G L VT+G +D+ + ++ +A +K + D + + + Sbjct: 411 NEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSH 470 Query: 777 EIEKRTYLYEDI--FAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVA 834 ++ ED+ +FA+MSD M + + H GNP+ +C + Sbjct: 471 DLAD-----EDLNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNM 525 Query: 835 AYDPNLIRPDKPDRDMAAKRIDAVPTAVM 863 + +L+ KP ++ A +ID +M Sbjct: 526 PGNDDLV---KPVKEQAENKIDGAVALIM 551 Score = 33.9 bits (76), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Query: 30 AFFEEILVHTKGQ--YTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELA 87 A F ++L HTKG+ + R LE WQ ++ FG V G RR+ + E+ Sbjct: 62 AKFIQLLPHTKGEWAFKRMPITLEPWQLF-VICCAFGWVNK----GSRLRRFREVYTEIP 116 Query: 88 RKNGKA 93 RKNGK+ Sbjct: 117 RKNGKS 122 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 127 bits (320), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 111/448 (24%), Positives = 191/448 (42%), Gaps = 30/448 (6%) Query: 428 AGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYD 487 AG+ LY D E E+Y A +KQA F A M K +P+L + + + Sbjct: 126 AGVALYCFTCDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPLLVEAFGIEVNASNLNR 185 Query: 488 AKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVAST 547 + + ++ + + G++P DE ++ ++ TGM GAR QPLM A T Sbjct: 186 PEDGARFEPLIGNPGD--GASPHCAIVDEYHEHPTDALYTTMLTGM--GARRQPLMWAIT 241 Query: 548 TAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNE-ECWPHANPA 604 TAG + EG K RE+ ++ P+N F I+ T E D W + + ANP Sbjct: 242 TAGYNIEGPCYDKRREVIEMLNGSVPNNELFGVIY-----TVDEGDDWTDPKVLEKANPN 296 Query: 605 LGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNK 664 +G + + + Q A NN F+ LN W + + + +W C+ Sbjct: 297 IGVSVYRDFLLSQQQRAINNARHAGVFKTKHLNVWVAARTAFFNLVSWQNCEDKTLT--- 353 Query: 665 DLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW---RHWIPESALAKLDRL 720 + F GQ C DLA + D+ S+ LF + DG R W+P + +++ Sbjct: 354 --LELFEGQPCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSVEKN 411 Query: 721 NDGRFAKEF---VPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQE 777 D R A+ F V G+L VT+G +D+ + ++ +A +K + D + + + + Sbjct: 412 EDRRTAERFQKWVEMGFLTVTDGAEVDYRYILEEAKAANKLNPVSESPIDPFGATGLSHD 471 Query: 778 IEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYD 837 + I ++ +MSD M + + H GNP+ +C + + Sbjct: 472 LADENLNPVTII---QNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGN 528 Query: 838 PNLIRPDKPDRDMAAKRIDAVPTAVMAT 865 +++ KP ++ A +ID +MA Sbjct: 529 DDVV---KPIKEQAENKIDGAVALIMAV 553 Score = 36.6 bits (83), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 8/71 (11%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFI--LEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIA 82 A KA F + +L HTKG++ K+ + LE WQ IV FG V+ G RR+ Sbjct: 58 AEKAAKFIQ-LLPHTKGEWAFKRMLITLEPWQL-FIVCCAFGWVQK----GTKLRRFREV 111 Query: 83 WIELARKNGKA 93 + E+ RKNGK+ Sbjct: 112 YTEIPRKNGKS 122 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 126 bits (316), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 115/464 (24%), Positives = 200/464 (43%), Gaps = 28/464 (6%) Query: 426 LLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRI 485 + AG+ + + AD E E+Y A ++QA F A MVK SP+L + L + + + Sbjct: 124 IAAGVGIAMFTADDEFGAEVYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQAL 183 Query: 486 YDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVA 545 + S ++ I + G++PS DE ++++ TGM GAR QPLM Sbjct: 184 NRPEDGSRFEPIIGNPGD--GASPSCAIEDEYHEHDTNAQYETMLTGM--GARRQPLMFV 239 Query: 546 STTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNE-ECWPHAN 602 TTAG + EG K R++ ++E PD+ F I+ T E+D W + AN Sbjct: 240 ITTAGANIEGPCYDKRRQVIEMLEGTVPDDELFGWIW-----TIDEDDDWTDPRVLAKAN 294 Query: 603 PALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKS 662 P +G + E + Q A + F+ LN W ++ + + W C+ Sbjct: 295 PNIGISVYQEYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKACEDRSLS- 353 Query: 663 NKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW---RHWIPESALAKLD 718 + F GQ C LD+A + DL S+ LF + DG R W+PE + + Sbjct: 354 ----LEQFEGQDCVLALDMARKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTE 409 Query: 719 RLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEI 778 + +V G+L T+G +D+ + ++ + ++R + D + + ++ Sbjct: 410 NRRMAERYQAWVNHGFLIETDGAEIDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQL 469 Query: 779 EKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDP 838 I ++ +MSD M + ++ H GNP+ +C S + + Sbjct: 470 ADEGLTPVTIV---QNYTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGND 526 Query: 839 NLIRPDKPDRDMAAKRIDAVPTAVMATN-AFYTRGGDYDSVYEE 881 +++RP K D +ID +MA A D +S+Y++ Sbjct: 527 DVVRPVKQGND---NKIDGAVALIMAVGRAMLADRVDSESIYDQ 567 Score = 35.0 bits (79), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 11/96 (11%) Query: 4 CGYTLDDIECTEVGA---HFCVPRANKAQAFFEEILVHTKGQ--YTRKKFILEDWQRDDI 58 C LDD+ ++ A F +A K + +L HTKG+ Y R+ LE WQ + Sbjct: 34 CQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQ-LLPHTKGEWAYKRQLVTLEPWQLFGL 92 Query: 59 VRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKAL 94 FG V F RR+ ++ E+ RKNGK++ Sbjct: 93 A-CTFGWVRKKTGF----RRFRESYWEVPRKNGKSV 123 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 123/455 (27%), Positives = 203/455 (44%), Gaps = 33/455 (7%) Query: 427 LAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKR-- 484 LA +YL ADGE E+Y A +KQA F A M L R + + Sbjct: 120 LAARGIYLFAADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRFGIELSGNQKN 179 Query: 485 ---IYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQP 541 ++ + S ++ + + G++P DE + D+++TGMG AR QP Sbjct: 180 PGPMFVMEDMSKFETVIGNPGD--GASPHAALVDEYHEHDTDALVDTMQTGMG--AREQP 235 Query: 542 LMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEEC-WPH 600 L+ TTAG++ G K R++ R++E + +Y T E+DPW++ Sbjct: 236 LLSIITTAGSNLGGPCHEKRRDVIRILEGQTIDETIFGIIY---TIDEDDPWDDPASLIK 292 Query: 601 ANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVF 660 ANP G + + + Q +A+ + + AFR LNQW + WM M AW K Sbjct: 293 ANPNYGVSVFPDFLLAQLQQAKRSASKQNAFRTKHLNQWVGARTVWMNMLAWQRQK---- 348 Query: 661 KSNKDLFDA-FAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDR 719 +D A AG CW LDLA+++D+ ++ LF ++ G + R + PE+A + ++ Sbjct: 349 ---RDFTIADMAGCRCWMALDLASKKDVAALVMLFEKA-GQFYCIPRFYAPEAAAEENEK 404 Query: 720 LNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIE 779 + FA E G L +T G + D+ + DI +K+ + D W ++ +I + Sbjct: 405 YQN--FALE----GHLVLTPGSMTDYAFIEADILDLAKQIDLQDAAFDDWQANYLITRLS 458 Query: 780 KRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPN 839 + D + +MSD M + +A+ L H GNP+ + A++ A + Sbjct: 459 NTSIPVVD---FNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKIDAKEN- 514 Query: 840 LIRPDKPDRDMAAKRIDAVPTAVMATNAFYTRGGD 874 I P K + + +ID T +MA G D Sbjct: 515 -IYPRKENDNDPNCKIDGPVTLIMAMGRALVAGVD 548 Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 32 FEEILVHTKGQYT--RKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARK 89 F +++ HTKG+++ + K + E WQ I +FG V+ KRR+ A+ E+ RK Sbjct: 59 FMQLMPHTKGKWSASKSKLVFEPWQVF-IEANIFGWVKRD----TGKRRFREAYEEIPRK 113 Query: 90 NGKA 93 NGK+ Sbjct: 114 NGKS 117 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 121/468 (25%), Positives = 210/468 (44%), Gaps = 51/468 (10%) Query: 421 THNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVD 480 ++L AG+ Y + A G + E+Y + ++ QA + F+ M S L KR K Sbjct: 114 NQKSQLEAGMAGYEIGAKGYNAAEVYTLGVERDQAKIVFEEWELMA--SKPLKKRFKFT- 170 Query: 481 YKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARV 539 +K I K+NSF ++ A K+ G NP DE A + M+D +++GM AR Sbjct: 171 -QKVIKHKKSNSFIKHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMM--ART 227 Query: 540 QPLMVASTTAGNDTEGFAGL-KHREMERVMEDP-DNPDFKHIFVYMRNTPMEEDPWNEEC 597 +PL+V TTAG D E A ++ + +++ +N + FV + E+DP++E+ Sbjct: 228 EPLLVIITTAGEDYEETACYYEYLDCCSILDGTFENEKY---FVMICELEDEDDPFDEKA 284 Query: 598 WPHANPALGRFLS-WEAMRKQAAEARN--NPIAEMAFRQFKLNQWQNS-TIRWMRMPAWD 653 W ANP L + E+MR+ A A+N N + F N + + +++ + W Sbjct: 285 WIKANPVLCTYEEGIESMRQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWK 344 Query: 654 ECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVD---LLWRHWIP 710 CK + + F G C+ G+DL+ DL SI + FP D + L + +IP Sbjct: 345 ACKENI------TLEKFRGHDCYIGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFIP 398 Query: 711 ESALAKLDRLNDGRF----AKEFVPGGWL---KVTEGDVLDFDVVYDDIEADSKRFTILG 763 + + + ++ + +KE GWL + EG ++D + + IE+ K + + Sbjct: 399 AEVVKEKMKTDNVPYNIWSSKE---KGWLIKTEANEGQIVDLWAILNTIESIVKEYEL-- 453 Query: 764 GDADQWSSDP-----VIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHG 818 + + S DP ++ E+E+R Y + A ++++ + K + H Sbjct: 454 -NVIEVSYDPHGAAMLVSELERRDY---NCVECGQSCAKLNEATVNFRDLMKIKQIVHDE 509 Query: 819 NPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATN 866 N L +C E D N K + KRID + + + A N Sbjct: 510 NNLMTWCVQNAEK-----DTNSFGEIKISKKSRFKRIDPLASCIFAHN 552 Score = 26.2 bits (56), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 38 HTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKA 93 H+KG K IL W + + +E RR+ A+I++ARKN K+ Sbjct: 67 HSKGVLEGKPIILNSW-----AKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKS 117 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 115 bits (289), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 117/475 (24%), Positives = 196/475 (41%), Gaps = 35/475 (7%) Query: 415 GKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSK 474 GKS+T AG+ + + V D E E+Y A +KQA F A MVK SP+L Sbjct: 119 GKSVTA-------AGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLID 171 Query: 475 RLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMG 534 + + S ++ I + G++PS DE +++++ TGM Sbjct: 172 SAGIEVNASNMNKPADGSRFEPIIGNPGD--GASPSCAIVDEYHEHDSAALYETMLTGM- 228 Query: 535 SGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDP 592 GAR QPLM TTAG + EG K R++ ++E PD+ F I+ T E D Sbjct: 229 -GARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIW-----TIDEGDD 282 Query: 593 WNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPA 651 W + ANP +G + + + Q A + F+ LN W ++ + + Sbjct: 283 WTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLED 342 Query: 652 WDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW---RH 707 W C+ + F GQ C LD+A + DL S+ LF DG R Sbjct: 343 WKSCEDRSLT-----LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRF 397 Query: 708 WIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDAD 767 W+PE + + + +V G L T+G +D+ + ++ + ++ + D Sbjct: 398 WVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLD 457 Query: 768 QWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFS 827 + + ++ I ++ +MSD M + + H GNP+ +C S Sbjct: 458 PHGATNLSHQLADEGLTPVTIV---QNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVS 514 Query: 828 ACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATN-AFYTRGGDYDSVYEE 881 + + +++RP K D +ID +MA A D +S+Y++ Sbjct: 515 NVIGKNLPGNDDVVRPIKQGND---NKIDGAVALIMAVGRAMLADRVDSESIYDQ 566 Score = 33.1 bits (74), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 23 PRANKAQAFFEEILVHTKGQYTRKKFI--LEDWQRDDIVRPLFGRVEYSDEFGCYKRRYE 80 P A + + E+L HTKG++ K + LE WQ+ ++ FG + KRR+ Sbjct: 54 PEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLM-ATFGWLNKR----TGKRRFR 108 Query: 81 IAWIELARKNGKAL 94 ++ E+ RKNGK++ Sbjct: 109 ESYWEVPRKNGKSV 122 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 107/451 (23%), Positives = 193/451 (42%), Gaps = 31/451 (6%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 + + AG+ LY+ D E E+Y A +KQA F A M + + L + + + + Sbjct: 116 SAMSAGVGLYMFACDDEFGAEVYSGATTEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQ 175 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 + + + ++ + D G++PS DE Q ++ +++TGMG AR QPL+ Sbjct: 176 SMSRPEDGARFEPLIGDPGD--GASPSCALIDEYHEHQTDALYQTMQTGMG--ARRQPLI 231 Query: 544 VASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNE-ECWPH 600 TTAG + EG K RE+ ++E P++ F I+ T + D W + Sbjct: 232 FGITTAGYNIEGPCYDKRREVIEMLEGIVPNDELFGIIY-----TIDDGDDWTDPAVLRK 286 Query: 601 ANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVF 660 ANP +G + + + Q A NNP F+ LN W + + + W +C+ Sbjct: 287 ANPNMGISVYSDYLLSQQRAAINNPRKVGVFKTKHLNIWVAAKDAFFNLVNWQKCEDRSL 346 Query: 661 KSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW---RHWIPESALAK 716 + F G +C DLA + DL ++ LF + DG + ++P + Sbjct: 347 T-----LERFEGHTCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYS 401 Query: 717 LDRLNDGRFAKEF---VPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDP 773 D + D R A+ + V GG++ VT+G +D+ + + + ++ + D + Sbjct: 402 AD-VTDSRTAERYQKWVEGGFITVTDGAEIDYREILESAKEANRLNAVEESPIDPHGATN 460 Query: 774 VIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 + + + ++ +MSD M + A H GNP+ +C S + Sbjct: 461 LSHHLADENL---NPITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKH 517 Query: 834 AAYDPNLIRPDKPDRDMAAKRIDAVPTAVMA 864 D +++RP K + +ID +MA Sbjct: 518 IPGDDDVVRPIKQGNE---NKIDGAVALIMA 545 Score = 35.0 bits (79), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%) Query: 4 CGYTLDDIECTEVGAHFCVPRANKAQ--AFFEEILVHTKGQ--YTRKKFILEDWQRDDIV 59 C LDD+E + + +KA+ A F ++L HTKG+ + R LE WQ I Sbjct: 28 CQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKGEWAFKRMPITLEPWQLFCIC 87 Query: 60 RPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKA 93 +FG V RR+ A+ E+ RKNGK+ Sbjct: 88 -VVFGWVRKKSGL----RRFREAYNEIPRKNGKS 116 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 113 bits (283), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 110/446 (24%), Positives = 185/446 (41%), Gaps = 27/446 (6%) Query: 426 LLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRI 485 + AG+ + + V D E E+Y A +KQA F A MVK SP L + + Sbjct: 123 IAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPARLMVKRSPELIVAADIEVNASNM 182 Query: 486 YDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVA 545 + S ++ + + G++PS DE +++++ TGM GAR QPLM Sbjct: 183 NKPEDGSRFEPLIGNPGD--GASPSCSIVDEYHEHDSAALYETMLTGM--GARRQPLMFI 238 Query: 546 STTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNE-ECWPHAN 602 TTAG + EG K R++ ++E PD+ F I+ T E D W + AN Sbjct: 239 ITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIW-----TIDEGDDWTDPRVLAKAN 293 Query: 603 PALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKS 662 P +G + + + Q A + F+ LN W ++ + + W C+ Sbjct: 294 PNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLT- 352 Query: 663 NKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW---RHWIPESALAKLD 718 + F GQ C LD+A + DL S+ LF DG R W+PE + + Sbjct: 353 ----LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEETVRNTE 408 Query: 719 RLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEI 778 + +V G L T+G +D+ + ++ + ++ + D + + ++ Sbjct: 409 NRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQL 468 Query: 779 EKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDP 838 E I ++ +MSD M + A H GNP+ +C S + + Sbjct: 469 EDEGLTPVTIV---QNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGND 525 Query: 839 NLIRPDKPDRDMAAKRIDAVPTAVMA 864 +++RP K D +ID +MA Sbjct: 526 DVVRPIKQGND---NKIDGAVALIMA 548 Score = 34.7 bits (78), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%) Query: 23 PRANKAQAFFEEILVHTKGQYT-RKKFI-LEDWQRDDIVRPLFGRVEYSDEFGCYKRRYE 80 P A + + E+L HTKG++ RK+ + LE WQ+ ++ FG + KRR+ Sbjct: 54 PEAAERKLALIELLPHTKGEWAFRKQLVTLEPWQKFGLM-ATFGWLNKR----TGKRRFR 108 Query: 81 IAWIELARKNGKAL 94 ++ E+ RKNGK++ Sbjct: 109 ESYWEVPRKNGKSV 122 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 119/475 (25%), Positives = 189/475 (39%), Gaps = 42/475 (8%) Query: 428 AGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYD 487 AGI +Y+ ADGE + E+Y A QA F A+QM K P L R V + +++ Sbjct: 123 AGIGMYMFCADGENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLTR 182 Query: 488 AKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVAST 547 + F V+ G +PS DE ++ ++ TGM GAR QPL + T Sbjct: 183 EDGSVFAPVVGNPGD---GDSPSCAIIDEYHEHPTDILYSTMTTGM--GARSQPLTLIIT 237 Query: 548 TAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNEEC-WPHANPA 604 TAG D E K E+++ ++ P+ F I+ D W + C ANP Sbjct: 238 TAGKDIESPCYDKDNEVKQCLDKMLPNERLFGMIYEL-----DALDNWQDPCNLIKANPN 292 Query: 605 LGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNK 664 LG + +E + ++ A+ P + LN W + + M W + + K Sbjct: 293 LGVSVFYEDLVEKLHLAKTVPRMTNDIKTKHLNMWVSGKTAFFNMDHWAKAEDKNLK--- 349 Query: 665 DLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW----RHWIPESALAKLD-- 718 F G+ GLDLAA+ DL + +F + + + W+PE + +D Sbjct: 350 --LSNFKGEESHLGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPK 407 Query: 719 -RLNDGRFAK----EFVPGGWLKVTEGDVLDFD----VVYDDIEADSKRFTILGGDADQW 769 R+ K ++ G L T+G D+ V D E D R + D Sbjct: 408 IAKTAKRYQKWVNMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASI--PIDPT 465 Query: 770 SSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSAC 829 + + E+ + +I + DF +MS M + H GNP+ +C S Sbjct: 466 GATALSHELADNGFEPINI---RQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNV 522 Query: 830 EARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNAFYTRGGDYD-SVYEERE 883 + +RP K D+ +ID +MA G D S+Y+ + Sbjct: 523 LGTFVPGSDDRVRPTKGDKQ---SKIDGATALLMAIGRAMLHGQDSSHSIYDNSD 574 Score = 34.7 bits (78), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 32 FEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNG 91 F ++L H+ G +K E WQ I +FG V + KRR++ +I + RKNG Sbjct: 63 FVQLLPHSSGDLKGQKLKAEPWQLF-IFSSIFGWVTKKGK----KRRFKETYIRVGRKNG 117 Query: 92 KAL 94 K+ Sbjct: 118 KSF 120 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 110 bits (275), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 115/448 (25%), Positives = 202/448 (45%), Gaps = 30/448 (6%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 ++LLA I Y EQS E+Y ++Q+++ ++ V+ +L + K D Sbjct: 117 SQLLALIASYECFLSPEQS-EVYIAGWGREQSSIVYNEVLAQVQACDLL--KGKYTDSYG 173 Query: 484 RIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 RI K+ S ++ +A K+ G NPS DE + ++D L +GM AR PL Sbjct: 174 RIRHKKSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMV--ARQNPL 231 Query: 543 MVASTTAGNDTEGFAGLKHREMERVMEDPDNP-DFKHIFVYMRNTPMEEDPWNEECWPHA 601 +V TTAG + +++ + +V+ DP +P + + FV + ++D +E W A Sbjct: 232 IVIITTAGFNLASPCYTEYQYVSKVI-DPGSPIENEEYFVMICELDKDDDIKDERNWVKA 290 Query: 602 NPALGRFLS-WEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTV 659 NP + + +R + A + P +F +N W + ++ + W C Sbjct: 291 NPIVATYEEGMNFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRAC---A 347 Query: 660 FKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRH-WIPESALAKLD 718 K DL + C+ G+DL+ R DL S+ + P DG +W H +IPE LA+ Sbjct: 348 IKEQIDL----DVRDCYVGIDLSMRIDLTSVSGIVPMDDGRF-YVWSHSFIPEDTLAE-K 401 Query: 719 RLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIE--ADSKRFTILGGDADQWSSDPVIQ 776 R D +V GW+ VT G V+D+ + I+ A+ K + I D +++ Sbjct: 402 RRTDKVPYDLWVKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAH 461 Query: 777 EIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAY 836 E+E Y+ +I + F +S+ R E L+ + H NP+ + + + Sbjct: 462 EMEAEGYVMVEI---RQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVK-QDH 517 Query: 837 DPNLIRPDKPDRDMAAKRIDAVPTAVMA 864 + N++ D+D + RID + + A Sbjct: 518 NENIML----DKDKSTGRIDPIAALINA 541 Score = 25.8 bits (55), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Query: 38 HTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKA 93 H KG + L D+Q IV +FG + RR+ A+I+LARKN K+ Sbjct: 67 HNKGILAGQPIELTDFQLF-IVGNIFGWKRKENGL----RRFRKAYIQLARKNAKS 117 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 107 bits (268), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 116/464 (25%), Positives = 184/464 (39%), Gaps = 27/464 (5%) Query: 428 AGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYD 487 AG+ +Y ADGE S E+Y A QA F A QM P L R + + D Sbjct: 122 AGVGIYTFCADGENSAEVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWT----D 177 Query: 488 AKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVAS 546 + T V A A K G +P DE M++++ GM GAR QPL + Sbjct: 178 SLTRPDGSVFAPMAGKPGDGDSPHCAIIDEYHEHDTDHMYEAMTMGM--GARSQPLTLII 235 Query: 547 TTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALG 606 TTAG+ E K +E++ +E + +F + + +D + + ANP L Sbjct: 236 TTAGSSLESPCYDKDKEVKEAIEGITCNE--RLFGMIYELDVGDDWTDPKNLIKANPNLN 293 Query: 607 RFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDL 666 + + + + A+ P AF+ +LN W + + M W + K Sbjct: 294 VSVKYSDLVELLEVAKQVPRKVNAFKTKRLNIWVSGKSAFYNMEQWKAAEDKNLK----- 348 Query: 667 FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW----RHWIPESALAKLD--RL 720 + FA +C GLDLA + D+ + LF + + + W+PE + D L Sbjct: 349 LEDFANDTCNVGLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLL 408 Query: 721 NDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEK 780 ++F G L+ T+G D+ + I I D D + + ++E Sbjct: 409 KTADRYQKFYEMGALEATDGAEADYREILASILDMQGENRIDEIDIDPAGATALRHQLED 468 Query: 781 RTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNL 840 + DI + D+ +MS +M + H GNP+ +C S + +L Sbjct: 469 YGFTVVDI---RQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDL 525 Query: 841 IRPDKPDRDMAAKRIDAVPTAVMA-TNAFYTRGGDYDSVYEERE 883 +RP K D +ID A T A SVY+E + Sbjct: 526 VRPTKGDNQ---SKIDGATALFNAMTRAMLNESSGGTSVYDEED 566 Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 32 FEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNG 91 F ++L H+ G+ +K LE WQ I +FG V D+ KRR+ A+I +ARKNG Sbjct: 62 FVQLLPHSSGELAGQKLKLEPWQ-SFIFCSIFGWVTKKDK----KRRFREAYIRVARKNG 116 Query: 92 KAL 94 K+ Sbjct: 117 KSF 119 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 101 bits (251), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 107/439 (24%), Positives = 194/439 (44%), Gaps = 33/439 (7%) Query: 435 LVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFY 494 + D +Q I G RD Q++ ++ + S +L + K I+ K S Sbjct: 128 FLGDEKQRAYIAGWTRD--QSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF--KNGSVV 183 Query: 495 DVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDT 553 ++ +A K+ G NPS DE A + ++D L +GM AR +PLM TTAG D Sbjct: 184 VPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMV--ARKEPLMFIITTAGFDL 241 Query: 554 EGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLS-WE 612 ++ + +++ N + FV + +D +E W ANP + + E Sbjct: 242 SRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLE 301 Query: 613 AMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNKDLFDAFA 671 +R A + P AF +N W + +M M W +C+ D FD F+ Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE-------VDTFD-FS 353 Query: 672 GQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVP 731 G + W G DL+ DL S+ ++ +G + ++PE+ L + ++ R+ + Sbjct: 354 GATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRY-DLWAE 412 Query: 732 GGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAY 791 G+L +T G+++D+ +V IE SK I D D+W++ + Q +E + ++ +I Sbjct: 413 QGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEI--- 469 Query: 792 KNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMA 851 A++S E K ++H+G+P+ + A + +++ D + M Sbjct: 470 PQRIANLSIPTKNFREKVYEKKVKHNGDPVLFW----------ALNNAVVKMDDQENIMI 519 Query: 852 AKRI--DAVPTAVMATNAF 868 +K+I + + A NAF Sbjct: 520 SKKISKNRIDPAAAVLNAF 538 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 101 bits (251), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 107/439 (24%), Positives = 194/439 (44%), Gaps = 33/439 (7%) Query: 435 LVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFY 494 + D +Q I G RD Q++ ++ + S +L + K I+ K S Sbjct: 128 FLGDEKQRAYIAGWTRD--QSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF--KNGSVV 183 Query: 495 DVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDT 553 ++ +A K+ G NPS DE A + ++D L +GM AR +PLM TTAG D Sbjct: 184 VPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMV--ARKEPLMFIITTAGFDL 241 Query: 554 EGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLS-WE 612 ++ + +++ N + FV + +D +E W ANP + + E Sbjct: 242 SRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLE 301 Query: 613 AMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNKDLFDAFA 671 +R A + P AF +N W + +M M W +C+ D FD F+ Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE-------VDTFD-FS 353 Query: 672 GQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVP 731 G + W G DL+ DL S+ ++ +G + ++PE+ L + ++ R+ + Sbjct: 354 GATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRY-DLWAE 412 Query: 732 GGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAY 791 G+L +T G+++D+ +V IE SK I D D+W++ + Q +E + ++ +I Sbjct: 413 QGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEI--- 469 Query: 792 KNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMA 851 A++S E K ++H+G+P+ + A + +++ D + M Sbjct: 470 PQRIANLSIPTKNFREKVYEKKVKHNGDPVLFW----------ALNNAVVKMDDQENIMI 519 Query: 852 AKRI--DAVPTAVMATNAF 868 +K+I + + A NAF Sbjct: 520 SKKISKNRIDPAAAVLNAF 538 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 193/439 (43%), Gaps = 33/439 (7%) Query: 435 LVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFY 494 + D +Q I G RD Q++ ++ + S +L + K I+ K S Sbjct: 128 FLGDEKQRAYIAGWTRD--QSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF--KNGSVV 183 Query: 495 DVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDT 553 ++ +A K+ G NPS DE A + ++D L +GM AR +PLM TTAG D Sbjct: 184 VPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMV--ARKEPLMFIITTAGFDL 241 Query: 554 EGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLS-WE 612 ++ + +++ N + FV + +D +E W ANP + + E Sbjct: 242 SRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLE 301 Query: 613 AMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNKDLFDAFA 671 +R A + P AF +N W + +M M W +C+ D D F+ Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE-------VDTLD-FS 353 Query: 672 GQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVP 731 G + W G DL+ DL S+ ++ +G + ++PE+ L + ++ R+ + Sbjct: 354 GATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRY-DLWAE 412 Query: 732 GGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAY 791 G+L +T G+++D+ +V IE SK I D D+W++ + Q +E + ++ +I Sbjct: 413 QGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEI--- 469 Query: 792 KNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMA 851 A++S E K ++H+G+P+ + A + +++ D + M Sbjct: 470 PQRIANLSIPTKNFREKVYEKKVKHNGDPVLFW----------ALNNAVVKMDDQENIMI 519 Query: 852 AKRI--DAVPTAVMATNAF 868 +K+I + + A NAF Sbjct: 520 SKKISKNRIDPAAAVLNAF 538 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 193/439 (43%), Gaps = 33/439 (7%) Query: 435 LVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFY 494 + D +Q I G RD Q++ ++ + S +L + K I+ K S Sbjct: 128 FLGDEKQRAYIAGWTRD--QSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF--KNGSVV 183 Query: 495 DVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDT 553 ++ +A K+ G NPS DE A + ++D L +GM AR +PLM TTAG D Sbjct: 184 VPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMV--ARKEPLMFIITTAGFDL 241 Query: 554 EGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLS-WE 612 ++ + +++ N + FV + +D +E W ANP + + E Sbjct: 242 SRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLE 301 Query: 613 AMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNKDLFDAFA 671 +R A + P AF +N W + +M M W +C+ D D F+ Sbjct: 302 GIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE-------VDTXD-FS 353 Query: 672 GQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVP 731 G + W G DL+ DL S+ ++ +G + ++PE+ L + ++ R+ + Sbjct: 354 GATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRY-DLWAE 412 Query: 732 GGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAY 791 G+L +T G+++D+ +V IE SK I D D+W++ + Q +E + ++ +I Sbjct: 413 QGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEI--- 469 Query: 792 KNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMA 851 A++S E K ++H+G+P+ + A + +++ D + M Sbjct: 470 PQRIANLSIPTKNFREKVYEKKVKHNGDPVLFW----------ALNNAVVKMDDQENIMI 519 Query: 852 AKRI--DAVPTAVMATNAF 868 +K+I + + A NAF Sbjct: 520 SKKISKNRIDPAAAVLNAF 538 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 189/416 (45%), Gaps = 29/416 (6%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 T ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L K + + + Sbjct: 118 TTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTL--RD 175 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 I+ T S A+D+ G N DEI ++D + ++ AR+QPL+ Sbjct: 176 EIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRAARLQPLL 233 Query: 544 VASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 + TTAG +G +++++ED + F Y+ + ++D + W Sbjct: 234 IYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWI 287 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMPAWDECKGT 658 ANP LG ++ + M+++ +A+ P F + N + N+ + ++ P T Sbjct: 288 KANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP-------T 340 Query: 659 VFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKL 717 + K+N+ + + G+ C G DL+ D + C F +G V +L WIP+ K+ Sbjct: 341 LQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKH---KV 397 Query: 718 DRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQE 777 + N+ +E+ G L V + +D+ V + I ++ + + D+ ++ + QE Sbjct: 398 EYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQE 457 Query: 778 IEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 ++ + E+ + +S ++ + E L + + NPL ++ + + ++ Sbjct: 458 LKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKL 510 Score = 31.2 bits (69), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKALDV 96 + RKNGK + Sbjct: 110 FMGRKNGKTTTI 121 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 189/416 (45%), Gaps = 29/416 (6%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 T ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L K + + + Sbjct: 118 TTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTL--RD 175 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 I+ T S A+D+ G N DEI ++D + ++ AR+QPL+ Sbjct: 176 EIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRAARLQPLL 233 Query: 544 VASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 + TTAG +G +++++ED + F Y+ + ++D + W Sbjct: 234 IYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWI 287 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMPAWDECKGT 658 ANP LG ++ + M+++ +A+ P F + N + N+ + ++ P T Sbjct: 288 KANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP-------T 340 Query: 659 VFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKL 717 + K+N+ + + G+ C G DL+ D + C F +G V +L WIP+ K+ Sbjct: 341 LQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKH---KV 397 Query: 718 DRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQE 777 + N+ +E+ G L V + +D+ V + I ++ + + D+ ++ + QE Sbjct: 398 EYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQE 457 Query: 778 IEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 ++ + E+ + +S ++ + E L + + NPL ++ + + ++ Sbjct: 458 LKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKL 510 Score = 31.2 bits (69), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKALDV 96 + RKNGK + Sbjct: 110 FMGRKNGKTTTI 121 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 189/416 (45%), Gaps = 29/416 (6%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 T ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L K + + + Sbjct: 118 TTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTL--RD 175 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 I+ T S A+D+ G N DEI ++D + ++ AR+QPL+ Sbjct: 176 EIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRAARLQPLL 233 Query: 544 VASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 + TTAG +G +++++ED + F Y+ + ++D + W Sbjct: 234 IYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWI 287 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMPAWDECKGT 658 ANP LG ++ + M+++ +A+ P F + N + N+ + ++ P T Sbjct: 288 KANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP-------T 340 Query: 659 VFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKL 717 + K+N+ + + G+ C G DL+ D + C F +G V +L WIP+ K+ Sbjct: 341 LQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKH---KV 397 Query: 718 DRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQE 777 + N+ +E+ G L V + +D+ V + I ++ + + D+ ++ + QE Sbjct: 398 EYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQE 457 Query: 778 IEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 ++ + E+ + +S ++ + E L + + NPL ++ + + ++ Sbjct: 458 LKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKL 510 Score = 31.2 bits (69), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKALDV 96 + RKNGK + Sbjct: 110 FMGRKNGKTTTI 121 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 95.1 bits (235), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 94/416 (22%), Positives = 188/416 (45%), Gaps = 29/416 (6%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 T ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L + + + + Sbjct: 118 TTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPL--RD 175 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 I+ T S A+D+ G N DEI ++D + ++ AR+QPL+ Sbjct: 176 EIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRAARLQPLL 233 Query: 544 VASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 + TTAG +G +++++ED + F Y+ + ++D + W Sbjct: 234 IYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDDINDSSNWI 287 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMPAWDECKGT 658 ANP LG + + M+++ +A+ P F + N + N+ + ++ P T Sbjct: 288 KANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP-------T 340 Query: 659 VFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKL 717 + K+N+ + D G+ C G DL+ D + C F +G V +L WIP+ K+ Sbjct: 341 LQKNNEIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKH---KV 397 Query: 718 DRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQE 777 + N+ +E+ G L + + +D+ V + I ++ + + D+ ++ + QE Sbjct: 398 EYSNEKIPYREWEEDGLLTIQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQE 457 Query: 778 IEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 ++ + E+ + +S ++ + E L + + NPL ++ + + ++ Sbjct: 458 LKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKL 510 Score = 31.2 bits (69), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKALDV 96 + RKNGK + Sbjct: 110 FMGRKNGKTTTI 121 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 94.7 bits (234), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 94/417 (22%), Positives = 183/417 (43%), Gaps = 31/417 (7%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 T ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L + + + + Sbjct: 118 TTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPL--RD 175 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 I+ T S A+D+ G N DEI ++D + ++ AR+QPL+ Sbjct: 176 EIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRAARLQPLL 233 Query: 544 VASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 + TTAG +G ++R++ED + F Y+ + ++D + W Sbjct: 234 IYITTAGYQLDGPLVNMVEAGRDTLDRIIED------ERTFYYLASLDDDDDINDSSNWI 287 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQW-QNSTIRWMRMPAWDECKGT 658 ANP LG + + M+++ +A+ P F + N + N + ++ P Sbjct: 288 KANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPT------- 340 Query: 659 VFKSNKDL--FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAK 716 + N D+ D G+ C G DL+ D + C F +G V +L WIP+ K Sbjct: 341 -LQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKH---K 396 Query: 717 LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQ 776 ++ N+ E+ G L + + +D+ V + I ++ + + D+ ++ + Q Sbjct: 397 VEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQ 456 Query: 777 EIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 E++ + E+ + +S ++ + E L + + NPL ++ + + ++ Sbjct: 457 ELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKL 510 Score = 31.2 bits (69), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKALDV 96 + RKNGK + Sbjct: 110 FMGRKNGKTTTI 121 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 94.0 bits (232), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 94/417 (22%), Positives = 182/417 (43%), Gaps = 31/417 (7%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 T ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L + + + + Sbjct: 8 TTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPL--RD 65 Query: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 I+ T S A+D+ G N DEI ++D + ++ AR+QPL+ Sbjct: 66 EIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRAARLQPLL 123 Query: 544 VASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 + TTAG +G ++R++ED + F Y+ + ++D + W Sbjct: 124 IYITTAGYQLDGPLVNMVEAGRDTLDRIIED------ERTFYYLASLDDDDDINDSSNWI 177 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQW-QNSTIRWMRMPAWDECKGT 658 ANP LG + M+++ +A+ P F + N + N + ++ P Sbjct: 178 KANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPT------- 230 Query: 659 VFKSNKDL--FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAK 716 + N D+ D G+ C G DL+ D + C F +G V +L WIP+ K Sbjct: 231 -LQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKH---K 286 Query: 717 LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQ 776 ++ N+ E+ G L + + +D+ V + I ++ + + D+ ++ + Q Sbjct: 287 VEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQ 346 Query: 777 EIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 833 E++ + E+ + +S ++ + E L + + NPL ++ + + ++ Sbjct: 347 ELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKL 400 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 87.4 bits (215), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 100/456 (21%), Positives = 191/456 (41%), Gaps = 40/456 (8%) Query: 419 TPTHN--TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRL 476 P N T + AG +LY + + E + Y A D +QA A + AQ ++ S L++ Sbjct: 110 VPKKNGKTIIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSEPLARHT 169 Query: 477 KVVD----------YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMW 526 ++ Y+ I + + V+ + K G NP DE+ A ++ M+ Sbjct: 170 QIYKGVNGTVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHAQENMDMY 229 Query: 527 DSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNT 586 D+L++ S R QP+M+ +TAG ++ + V+E+ D+ +FV + Sbjct: 230 DNLKSAQIS--REQPMMLNISTAGKGASSVGMRVYKYAKLVLENDDDDS---LFVAIWEP 284 Query: 587 PMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRW 646 D + + W NP +G ++ E + + +A+ + ++ F LN + N + Sbjct: 285 NKNYDWEDRKVWKMVNPNIGVSVTMEQLEIEFKKAKQSAHSKAEFLSKHLNVFVNGADNY 344 Query: 647 MRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGS----VD 702 D+ + + K DL G+ C+ GLDL+ DL + FP D + Sbjct: 345 FE---HDQVQHVLVKDLGDL----TGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIK 397 Query: 703 LLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTIL 762 + +++P + ++ ++ + + V G+ +G ++D D + + I + + Sbjct: 398 VKQMYFLPNENIDFKEKEDNVPYT-DMVERGFATFCDGKMIDQDQIMEYIVECMDLYDVQ 456 Query: 763 GGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF-AHMSDSMHRIFEWTLAKNLRHHGNPL 821 + D S +I+++E + Y N A + DS I+E L + NPL Sbjct: 457 QINYDPAMSQKLIEKLENLGLECIAVNQYPNVMNAMLDDSEILIYEKRLITD-----NPL 511 Query: 822 ARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDA 857 F + A V N+ P + + K+ID Sbjct: 512 --FVYCALNVVVVT---NINGMKAPSKRQSKKKIDG 542 Score = 28.9 bits (63), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 20 FCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRY 79 F V RAN+ F + + H KG + LE W+ + ++G + +E G R Sbjct: 46 FDVDRANEMLDFVQSFIRHVKGPLAGQLMELELWEM-FVFANMYGWY-HKNEKGKTVRVI 103 Query: 80 EIAWIELARKNGKALDVETPILTGNGWKKMGDIQVG 115 +++++ +KNGK + +L + G++++G Sbjct: 104 RESYVQVPKKNGKTIIAAGALL----YAMYGELELG 135 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 87.0 bits (214), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 21/235 (8%) Query: 424 TELLAGIMLYLLVAD-GEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYK 482 + + A IMLY L+AD G+ ++ A D+ QA + FD A QMV SP L+ V + + Sbjct: 92 STIAAAIMLYHLIADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKLA---AVCNVQ 148 Query: 483 KRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 + + K N+ Y V++ADA G NP+ DE + ++D+L +GS AR QP+ Sbjct: 149 RDVIRYKDNT-YRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALT--LGSAARNQPM 205 Query: 543 MVASTTAGNDTEG-FAGLKHREMERVME-DPDNPDFKHIFVYMRNTPMEE--DPWNEECW 598 + +TAG D +G FA L + ERV + D+P +F + E D + E W Sbjct: 206 FLIISTAGPDPDGPFAALCE-QGERVNSGEADDP---TLFYRSWGPKLGETVDHLDPEVW 261 Query: 599 PHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWD 653 NP S++ + +A E +FR ++L+Q+ W+ WD Sbjct: 262 ARCNP------SYDILNPDDFKAAAQRSTEASFRIYRLSQFVRGASTWLPHGLWD 310 Score = 33.1 bits (74), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 8 LDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVE 67 +D + + A P A + E + G + + F L WQR ++ Sbjct: 10 IDPVIARHIPADAPFPSEGYRVAKWIEEFCYLTGSFAGQPFRLLPWQRTLLID---AYEL 66 Query: 68 YSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHAADGTLAR 127 D FG ++R++ + +ARKNGK+ + I+ + GD Q A D AR Sbjct: 67 TQDTFGRWRRKHRTVVVCVARKNGKST-IAAAIMLYHLIADRGDAQRQVIAAANDRNQAR 125 Query: 128 VSYVSERH 135 + + S + Sbjct: 126 MVFDSAKQ 133 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 19/234 (8%) Query: 424 TELLAGIMLYLLVAD-GEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYK 482 + + A IMLY L+AD G+ +I A D+ QA + FD A QMV SP L+ V D + Sbjct: 89 STIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLA---AVCDVQ 145 Query: 483 KRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 + + K N+ Y V++ADA G NP+ DE + ++D+L +GS AR QP+ Sbjct: 146 RDVIRYKDNT-YRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALT--LGSAARNQPM 202 Query: 543 MVASTTAGNDTEG-FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEE--DPWNEECWP 599 + +TAG D +G FA L + + D+P +F + E D + + W Sbjct: 203 FLIISTAGPDPDGPFAALCEQGERVNSGEADDPT---LFYRSWGPKLGETVDHLDPDVWR 259 Query: 600 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWD 653 NP S++ + +A E +FR ++L+Q+ W+ WD Sbjct: 260 ACNP------SYDILNPDDFKAAAQRSTEASFRIYRLSQFVRGASTWLPHGLWD 307 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 8 LDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVE 67 +D + + A VP A + E + G + + F L WQR+ ++ V Sbjct: 7 IDPVIARHIPADATVPSEGYRVAKWIEEFCYLTGSFAGQPFRLLPWQRELLID---AYVL 63 Query: 68 YSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHAADGTLAR 127 D FG ++R++ + +ARKNGK+ + I+ + GD Q A D AR Sbjct: 64 TQDTFGRWRRKHRTVVVCVARKNGKST-IAAAIMLYHLIADRGDAQRQIIAAANDRNQAR 122 Query: 128 VSYVSERH 135 + + S + Sbjct: 123 MVFDSAKQ 130 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 77.4 bits (189), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 112/475 (23%), Positives = 203/475 (42%), Gaps = 44/475 (9%) Query: 409 SHVFLAGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKF 468 S+V LA K+ N+ GI + L D + ++Y A KQA + + A + ++ Sbjct: 102 SYVQLARKNAKSLLNS----GIGIKLAAFDKYPNAQVYCTATKMKQARIVWKQARKFIEI 157 Query: 469 SPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDS 528 P L + K+ D+ I + D + G +P G DE + + M Sbjct: 158 EPDLREIFKIKDHDAIIESLINGGEIMALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKL 217 Query: 529 LRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPM 588 L G S + + L+ TTAG + G + + V+E N D F+Y+ + Sbjct: 218 LEDG--SVNQAESLISIITTAGFNLNGPCYKEWEYCKNVLEGIVNND--EYFIYIAQMDV 273 Query: 589 EEDPWNEECWPHANPALGRF-LSWEAMRKQAAEARNNPIAEMA-FRQFKLNQW-QNSTIR 645 E+D W+ W ANP + + E +++ A E++ ++ F LN W + S + Sbjct: 274 EDDIWDPNNWLKANPLVAKLPKGLENLKRFAEESKQKGGDDLKNFLTKSLNIWYEFSNDQ 333 Query: 646 WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFP-----QSDGS 700 ++ W ++K + F G++C+ GLDL++ DL S+ +FP ++ Sbjct: 334 YIGPSVWK------VGASKLTLENFKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEK 387 Query: 701 VDLLWRH---WIPESALAKLDRLNDGRFAKEFVPGGWLKVTE---GDVLDFDVVY----D 750 V + H +IP+ +A+ + +D + ++ G L VTE G D+ + D Sbjct: 388 VRKYFIHSHSFIPKRRVAEHIQSDDVPY-DVWIENGLLTVTETLGGIKTDYKYIIKYLRD 446 Query: 751 DIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTL 810 IE + LG D ++D +Q++E+ + +IF ++D Sbjct: 447 LIEEFQLKIIQLGYDPH--NADTFLQDLEELGFDCVEIF---QSCKWLNDPTEDFKLECE 501 Query: 811 AKNLRHH-GNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMA 864 A N+ ++ N L +S A++ + I K D+++ KRID V + A Sbjct: 502 AGNIEYNEENEL--LSWSVVNAKLVSNSNGEI---KIDKNLQEKRIDPVDAVIDA 551 Score = 35.0 bits (79), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 9/94 (9%) Query: 4 CGYTLDDIECTEVGAH---FCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 C +DD+E +++ + F + +A ++ FFE+ L T G+ ++ L +Q D IV Sbjct: 27 CQRHIDDLERSKLAPYKYEFDLEKALESIDFFED-LRFTDGEIAGQQVKLFGFQ-DFIVG 84 Query: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKAL 94 +FG V G RR++ ++++LARKN K+L Sbjct: 85 SIFGWVCK----GTGYRRFKKSYVQLARKNAKSL 114 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 23/295 (7%) Query: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 ++ LA I Y + E+ ++ ++Q+ + + + +PIL + K Sbjct: 106 SQFLALIASYEIFPTQEKH-RVFIAGWSREQSDEVYQAILEQLHHAPIL--KGKYTSANG 162 Query: 484 RIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 R+ KTNS ++ +A K G NPS DE A + ++D L +GM AR PL Sbjct: 163 RVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMV--ARRSPL 220 Query: 543 MVASTTAGNDTEGFAGLKHREMERVME---DPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 M TTAG + E +++ ++++ D +N D+ FV + E+D +E W Sbjct: 221 MAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDY---FVMICELDPEDDIKDESNWI 277 Query: 600 HANPALGRFLS-WEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKG 657 ANP + + E++R A P +F +N+W + +M+M W C G Sbjct: 278 KANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSG 337 Query: 658 TVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPES 712 + DL G + GLDL+ DL S+ Y+ Q DG + ++P++ Sbjct: 338 EI----PDL----QGLPVYLGLDLSMTTDLTSVGYVAVQ-DGFFYVGQHSFMPDA 383 Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust. Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 5/27 (18%) Query: 72 FGCYK-----RRYEIAWIELARKNGKA 93 +G YK RR+ A+I+LARKN K+ Sbjct: 80 YGFYKKENGARRFRKAYIQLARKNAKS 106 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 158/394 (40%), Gaps = 34/394 (8%) Query: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 Query: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 Query: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 Query: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Query: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 Query: 732 GGWLKVTEGD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYED 787 G + T+ D ++D+ V D I + + D W++ I IE + Sbjct: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP- 468 Query: 788 IFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 + F +S S+ W + ++H+ N L Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNML 502 Score = 28.9 bits (63), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 L+G R +Y R + A+I +ARK GK+L V Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 158/394 (40%), Gaps = 34/394 (8%) Query: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 Query: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 Query: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 Query: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Query: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 Query: 732 GGWLKVTEGD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYED 787 G + T+ D ++D+ V D I + + D W++ I IE + Sbjct: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP- 468 Query: 788 IFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 + F +S S+ W + ++H+ N L Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNML 502 Score = 28.9 bits (63), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 L+G R +Y R + A+I +ARK GK+L V Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 158/394 (40%), Gaps = 34/394 (8%) Query: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 Query: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 Query: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 Query: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Query: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 Query: 732 GGWLKVTEGD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYED 787 G + T+ D ++D+ V D I + + D W++ I IE + Sbjct: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP- 468 Query: 788 IFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 + F +S S+ W + ++H+ N L Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNML 502 Score = 28.9 bits (63), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 L+G R +Y R + A+I +ARK GK+L V Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 158/394 (40%), Gaps = 34/394 (8%) Query: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 Query: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 Query: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 Query: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Query: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 Query: 732 GGWLKVTEGD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYED 787 G + T+ D ++D+ V D I + + D W++ I IE + Sbjct: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP- 468 Query: 788 IFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 + F +S S+ W + ++H+ N L Sbjct: 469 LIELGQSFKALSQSIKEFRMWVADERIQHNDNML 502 Score = 28.9 bits (63), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 L+G R +Y R + A+I +ARK GK+L V Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 158/394 (40%), Gaps = 34/394 (8%) Query: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 Query: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 Query: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 Query: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Query: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 Query: 732 GGWLKVTEGD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYED 787 G + T+ D ++D+ V D I + + D W++ I IE + Sbjct: 410 RGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP- 468 Query: 788 IFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 + F +S S+ W + ++H+ N L Sbjct: 469 LIELGQSFKALSQSIKEFRMWVADERIQHNDNML 502 Score = 28.9 bits (63), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 L+G R +Y R + A+I +ARK GK+L V Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/398 (21%), Positives = 157/398 (39%), Gaps = 42/398 (10%) Query: 444 EIYGVARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADA 501 +IY + KQA F +A+Q V SK R K K I D ++S + ++ + Sbjct: 127 QIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNP 186 Query: 502 KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKH 561 + G +P+ DE+ + D M+ +TGM + PL + +TAG++ ++ Sbjct: 187 DAVDGKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEY 244 Query: 562 REMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMR 615 + ++R++ + D + FVY +E+ +E W A P L L Sbjct: 245 KYIKRILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKAD 302 Query: 616 KQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSC 675 Q + ++ + F L Q Q + + W++ + N G+ Sbjct: 303 IQDELEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDV 353 Query: 676 WFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI----PESALAKLDRLNDGRFAKEFVP 731 + G+DL+ DL S+ ++FP D V L +I +K D++N + + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKIN----YELAIE 409 Query: 732 GGWLKVTEGD--------VLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTY 783 G + T+ D V+DF V + + + D W++ I IE Sbjct: 410 RGEAETTQSDSGMIDSKQVIDFIVKF----ITTHDLNVQAVCYDPWNAQSFITTIESMAL 465 Query: 784 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 821 + + F +S S+ W + ++H+ N L Sbjct: 466 DWP-LIEVGQSFKALSQSIKEFRMWVADERIQHNDNML 502 Score = 28.9 bits (63), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 15/98 (15%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKALDV 96 L+G R +Y R + A+I +ARK GK+L V Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIV 108 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 20/189 (10%) Query: 531 TGMGSGARVQPL--MVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPM 588 + M SG PL M +TAG D ++ +++E D + V + Sbjct: 233 SSMTSGMVNNPLAQMFFISTAGVDPTVPMFEDYKRYSKMLESGDWSSSEKDLVLIWEQDS 292 Query: 589 EEDPWNEECWPHANPALGRFLSWEAMRKQAAEA----RNNPIAEMAFRQF---KLNQWQN 641 E++ + E WP +NP + E+MRK E R++ ++ R F +N WQN Sbjct: 293 EDEAYLIETWPKSNP----LMEIESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQN 348 Query: 642 STIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSV 701 + + +P D + + D FD F G+ + G D + D S+ ++FP S Sbjct: 349 AK-KNAYLPL-DLVQDAIV----DEFDYF-GRDVFIGFDYSQTNDDTSLAFVFPHSGSKF 401 Query: 702 DLLWRHWIP 710 L WIP Sbjct: 402 HLYQHSWIP 410 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 46.6 bits (109), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/294 (22%), Positives = 115/294 (39%), Gaps = 37/294 (12%) Query: 426 LLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDY--K 482 L++GI+ YLL G ++ + VA + QA +FD V+ +P +LK + Y K Sbjct: 103 LISGIIAYLLSPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESNP----KLKEIYYNTK 158 Query: 483 KRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 I TNS ++ + G DEI ++ ++G+G + Sbjct: 159 SEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREF 218 Query: 543 MVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHAN 602 + T G EGF + ++V+ N + +F ++ E + ++E W AN Sbjct: 219 YIG--TDGYVREGFIDSMKDKAKKVL--SGNARWNSMFPFICKIDEEHEVDDKEKWQKAN 274 Query: 603 PALGRFLS------WEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECK 656 P +S ++ + +Q E +P F + M P D + Sbjct: 275 PMFHEPMSDYAQELFDMVCEQYEEMVEDPSNREEF-----------MTKRMDFPVMDVER 323 Query: 657 GT-----VFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW 705 + + ++L D G+ C GLD AA RD ++ LF D +W Sbjct: 324 SVASHEELVATKRELPDM-RGEVCIGGLDYAAIRDFAAVGLLFK---NGADYVW 373 >gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: putative ATP-dependent DNA helicase # Family: family:all:1546 # MgeID: mge:1500 # MgeName: phiEL # Cross-refs: genbank:acc:YP_418044;genbank:gi:82700944;goa:Q2Z170;int erpro:IPR000871;uniprot:Q2Z170;genbank:GeneID:5176636 Length = 1088 Score = 46.6 bits (109), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/341 (24%), Positives = 122/341 (35%), Gaps = 51/341 (14%) Query: 95 DVETPILTGNGWKKMGDIQVGDYVHAADGTLARVSYVSERHWRDCFSVQFADGAELVASD 154 D I + WK++ ++VGD V G +V + + R + V +DG Sbjct: 195 DTLKTITPQDTWKRIEHLRVGDQVLDRSGKPCQVIGIHPQGKRRLYRVITSDGRATDVGT 254 Query: 155 HHLWAVNDR---LKGERV---IDTAELYRTQTYGARGDRRYTVTVPEALDRDEAPLPLDP 208 HLW + D L G + T ++ + VP + E LP+DP Sbjct: 255 EHLWTLKDYSNCLNGRALWNDYSTVDVINLLKKKVKLQLPLPAPVPGS----EQDLPIDP 310 Query: 209 YILG-AWLG---DGTATRAEFTSEDPEIFAAIEAAGYPLSYDYA-SGNARTRGAKGLVAV 263 Y+LG + G DG T + G + A S RT L Sbjct: 311 YVLGLIYCGQDQDGKVIIPTRTDAVKQYVVDHLPRGVTVIQGVANSCLERTDNQPYLFN- 369 Query: 264 LRKMGVLGAKHVPQDYLIGSRAQRLALLQGLMDTDGSVITGPNTPRVEFCNTNRDLAEAA 323 R+ G +P YL R LLQ +D G V G F NR L Sbjct: 370 -REHG------LPDQYLEAPLNARRDLLQAFLDVRGKVGRGK-----VFIALNRVLGGQL 417 Query: 324 LFLARSLGWKATLKESRARLNGKDCGPRFRVSWTAYSDMSPFRLQRKSDKLAAAPARATR 383 +LARSLG + + NG V T ++ PF+ + ++ Sbjct: 418 AYLARSLGGTGKVTK-----NG--------VEITLPEEVPPFKFREEN---------VVF 455 Query: 384 ARTNTITSVTPVPTVETVCIQIDHPSHVFLAGKSLTPTHNT 424 I VT V + CI++D+ ++L + THNT Sbjct: 456 DNRLLIERVTFVGDDDCTCIEVDNSEQLYLTDDFIV-THNT 495 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 45.4 bits (106), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/305 (21%), Positives = 119/305 (39%), Gaps = 40/305 (13%) Query: 426 LLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDY--K 482 L++GI+ YL+ G ++ + VA + QA +FD V+ +P +LK + Y K Sbjct: 103 LISGIIAYLISPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESNP----KLKEIYYNTK 158 Query: 483 KRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 I TNS ++ + G DEI ++ ++G+G + Sbjct: 159 SEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREF 218 Query: 543 MVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHAN 602 + T G EGF + ++V+ + +F ++ E + ++E W AN Sbjct: 219 YIG--TDGYVREGFIDSMKDKAKKVLSGA--ARWNSMFPFICKIDEEHEVDDKEKWQKAN 274 Query: 603 PALGRFLS------WEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECK 656 P + +S ++ + +Q E +P F + M P D + Sbjct: 275 PMFHQPMSDYAQELFDMVCEQYEEMIEDPSNREEF-----------MTKRMDFPVMDVER 323 Query: 657 GT-----VFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPE 711 + + ++L D G+ C GLD AA RD ++ LF D V W+ Sbjct: 324 SVASHEELVATKRELPDM-RGEVCIGGLDYAAIRDFAAVGLLFKDRDDYV------WLSH 376 Query: 712 SALAK 716 S + K Sbjct: 377 SFVRK 381 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 45.1 bits (105), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 17/239 (7%) Query: 405 IDHPSHVFLAGKSLTPTHNTE--LLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVA 462 + H VF+ L P N++ L AGIM+ L+ + Q+ +A + AA AF+ A Sbjct: 78 VRHIKEVFI----LIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAANAFNPA 133 Query: 463 AQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQD 522 MV+ L +V + + I T++ V+AAD + G G DE+ W Sbjct: 134 RDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDEL--WLF 191 Query: 523 GGMW---DSLRTGMGS-GARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKH 578 G + D LR +G +R + +V +TT N+ + + R + D D Sbjct: 192 GKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHF 251 Query: 579 IFVYMRNTP-MEEDPWN--EECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 634 + V + P M E + E NP LG + + ++ +AR E AFR F Sbjct: 252 LPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRKAREA--GEEAFRGF 308 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/305 (22%), Positives = 120/305 (39%), Gaps = 23/305 (7%) Query: 482 KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQP 541 K +I + T S ++ K+ G DEI + M + R G+G + Sbjct: 163 KAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRT 222 Query: 542 LMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHA 601 + +T G EG+ ++ V+ F + P E D + + W A Sbjct: 223 FYI--STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVD--DRQTWEKA 278 Query: 602 NPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECK----- 656 NP L + LS A K ++ F + N+ + T R M +P D K Sbjct: 279 NPMLHKPLSEYA--KTLLSTIEEEYNDLPFN--RSNKPEFMTKR-MNLPEVDLEKVIAPW 333 Query: 657 GTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAK 716 + +N+++ Q C GLD A RD S+ LF ++D + W+ S + + Sbjct: 334 KEILATNREI-PNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYI------WLGHSFVRQ 386 Query: 717 --LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPV 774 LD + KE+ G L + + DV++ + + D +++ + AD + +D V Sbjct: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIV 446 Query: 775 IQEIE 779 + E Sbjct: 447 RRAFE 451 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/305 (22%), Positives = 120/305 (39%), Gaps = 23/305 (7%) Query: 482 KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQP 541 K +I + T S ++ K+ G DEI + M + R G+G + Sbjct: 163 KAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRT 222 Query: 542 LMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHA 601 + +T G EG+ ++ V+ F + P E D + + W A Sbjct: 223 FYI--STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVD--DRQTWEKA 278 Query: 602 NPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECK----- 656 NP L + LS A K ++ F + N+ + T R M +P D K Sbjct: 279 NPMLHKPLSEYA--KTLLSTIEEEYNDLPFN--RSNKPEFMTKR-MNLPEVDLEKVIAPW 333 Query: 657 GTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAK 716 + +N+++ Q C GLD A RD S+ LF ++D + W+ S + + Sbjct: 334 KEILATNREI-PNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYI------WLGHSFVRQ 386 Query: 717 --LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPV 774 LD + KE+ G L + + DV++ + + D +++ + AD + +D V Sbjct: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIV 446 Query: 775 IQEIE 779 + E Sbjct: 447 RRAFE 451 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/305 (22%), Positives = 120/305 (39%), Gaps = 23/305 (7%) Query: 482 KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQP 541 K +I + T S ++ K+ G DEI + M + R G+G + Sbjct: 163 KAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRT 222 Query: 542 LMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHA 601 + +T G EG+ ++ V+ F + P E D + + W A Sbjct: 223 FYI--STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVD--DRQTWEKA 278 Query: 602 NPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECK----- 656 NP L + LS A K ++ F + N+ + T R M +P D K Sbjct: 279 NPMLHKPLSEYA--KTLLSTIEEEYNDLPFN--RSNKPEFMTKR-MNLPEVDLEKVIAPW 333 Query: 657 GTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAK 716 + +N+++ Q C GLD A RD S+ LF ++D + W+ S + + Sbjct: 334 KEILATNREI-PNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYI------WLGHSFVRQ 386 Query: 717 --LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPV 774 LD + KE+ G L + + DV++ + + D +++ + AD + +D V Sbjct: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIV 446 Query: 775 IQEIE 779 + E Sbjct: 447 RRAFE 451 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 42.4 bits (98), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 87/392 (22%), Positives = 153/392 (39%), Gaps = 58/392 (14%) Query: 415 GKSLTPTHNTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAF----DVAAQMVKF 468 GKSL L++G++LY L + ++Y A D+KQA + F D +++ Sbjct: 102 GKSL-------LISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRK 154 Query: 469 SPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDS 528 P + + +K+ + + + S + D G P DE + M ++ Sbjct: 155 DPGIKRMVKIT--RDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIET 212 Query: 529 LRTGMGSGARVQP--LMVASTTAGNDTE-GFAGLKHREMERVMEDPDNPDFKHIFVYMRN 585 L SG + P L +TAG D + ++V+ + + F+ ++ Sbjct: 213 L----ASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQD 268 Query: 586 TPMEEDPWNEECWPHANPAL---------GRFLSWEAMRKQAAEARNNPIAEMAFRQFKL 636 E D N W +NP L +L+ + + +A + N + + Sbjct: 269 NVQEVDDPN--SWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLVK------NF 320 Query: 637 NQWQNSTI-RWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFP 695 N W+ +T ++ AW K D+ GQ W G+D+ DL +I +L P Sbjct: 321 NIWRQATEDSYLDFDAW---KAAELTDKPDI----RGQRAWIGIDVGRTSDLFAISWLIP 373 Query: 696 QS-----DGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYD 750 Q DG + + I K DR++ A E G + E ++D D VY+ Sbjct: 374 QEGWWWLDGYAFVASKGGIDNK--IKTDRID--YLAAEQHGEGEISSLESGIIDNDRVYE 429 Query: 751 DIEADSKR--FTILGGDADQWSSDPVIQEIEK 780 +E +R + G D + P++ IEK Sbjct: 430 WLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 Score = 28.5 bits (62), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 9 DDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEY 68 +D++ T+ H+ A KA F E IL K + K L +Q+ I+ ++G V+ Sbjct: 28 EDLKRTDWRWHYDPNLAGKAVKFME-ILPEPK---SGKPQPLAPFQKF-IIGSIYGWVDK 82 Query: 69 SDEFGCYKRRYEIAWIELARKNGKALDVETPIL 101 D RR+ +I +ARKNGK+L + IL Sbjct: 83 DD---SNIRRFTDVFISMARKNGKSLLISGVIL 112 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 40.4 bits (93), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 23/259 (8%) Query: 504 ALGSNPS-----GCG---ADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEG 555 AL +NP C ADE+ A++ ++ ++ M A LM+ TTAG+D Sbjct: 195 ALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMK--AYTNKLMIGITTAGDDMTS 252 Query: 556 FAGLKHREMERVMEDPDNPDFKHIFVYM--RNTPMEEDPWNEECWPHANPALGRFLSWEA 613 F + + ++++++ + +F+ + E D N ANP G + + Sbjct: 253 FCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANPNYGVTIRPDD 312 Query: 614 MRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQ 673 + A +A+N+P F LN + + + + DE K + K + + Sbjct: 313 IMNDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNI---DEFKKSDRKYDWTIEQLAKLG 369 Query: 674 SCWF-GLDLAARRDLCSICYLFPQSDGSVDLLWRH-WIP-ESALAKLDRLNDGRFAKEFV 730 WF G DL+ DL + L+ +G VD+ H W P +A K + N F + Sbjct: 370 IDWFGGADLSKLHDLTAAA-LYGNYNG-VDIAITHAWFPIVAATRKAEEDNIPLFG--WR 425 Query: 731 PGGWLKVTEGDVLDF-DVV 748 GWL +T ++F DVV Sbjct: 426 DDGWLTMTNTPTVNFSDVV 444 Score = 27.3 bits (59), Expect = 0.85, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Query: 33 EEILVHTKGQ------YTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIEL 86 E+ VH +G+ + F+LE WQ+ I L ++ G RR++ A+I + Sbjct: 59 EKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLK-----GTKIRRFKEAFIFI 113 Query: 87 ARKNGKA 93 RKNGK Sbjct: 114 PRKNGKT 120 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 40.4 bits (93), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 23/259 (8%) Query: 504 ALGSNPS-----GCG---ADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEG 555 AL +NP C ADE+ A++ ++ ++ M A LM+ TTAG+D Sbjct: 195 ALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMK--AYTNKLMIGITTAGDDMTS 252 Query: 556 FAGLKHREMERVMEDPDNPDFKHIFVYM--RNTPMEEDPWNEECWPHANPALGRFLSWEA 613 F + + ++++++ + +F+ + E D N ANP G + + Sbjct: 253 FCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANPNYGVTIRPDD 312 Query: 614 MRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQ 673 + A +A+N+P F LN + + + + DE K + K + + Sbjct: 313 IMNDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNI---DEFKKSDRKYDWTIEQLAKLG 369 Query: 674 SCWF-GLDLAARRDLCSICYLFPQSDGSVDLLWRH-WIP-ESALAKLDRLNDGRFAKEFV 730 WF G DL+ DL + L+ +G VD+ H W P +A K + N F + Sbjct: 370 IDWFGGADLSKLHDLTAAA-LYGNYNG-VDIAITHAWFPIVAATRKAEEDNIPLFG--WR 425 Query: 731 PGGWLKVTEGDVLDF-DVV 748 GWL +T ++F DVV Sbjct: 426 DDGWLTMTNTPTVNFSDVV 444 Score = 27.3 bits (59), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Query: 33 EEILVHTKGQ------YTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIEL 86 E+ VH +G+ + F+LE WQ+ I L ++ G RR++ A+I + Sbjct: 59 EKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLK-----GTKIRRFKEAFIFI 113 Query: 87 ARKNGKA 93 RKNGK Sbjct: 114 PRKNGKT 120 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 40.4 bits (93), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%) Query: 428 AGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYD 487 +G+ML +L+ +S VA + A +F AA V+ P LSK +++ + K + + Sbjct: 108 SGVMLTMLITGWRKSATYMIVAPTIEVAQASFKPAADSVRADPQLSKLIQISAHTKTLTN 167 Query: 488 AKTNSFYDVIAADAKSALGSNPSGCGADE 516 + + ++AAD + GS S DE Sbjct: 168 RVSGAVLKIVAADENTVTGSKASVLLVDE 196 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 38.5 bits (88), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 42/89 (47%) Query: 428 AGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYD 487 +G+ML L+ +S VA + A +F A+ V+ P LSK + + + + + + Sbjct: 100 SGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTN 159 Query: 488 AKTNSFYDVIAADAKSALGSNPSGCGADE 516 + + VIAAD S GS S DE Sbjct: 160 RVSGAVLKVIAADENSVTGSKASVLLVDE 188 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 38.1 bits (87), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%) Query: 535 SGARVQPLMV-ASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPW 593 + AR P ++ AS+T D+ L R M +DPD ++M D Sbjct: 213 TSARANPFIIYASSTGLEDSTELEKLHDRGMR---QDPD-------MLFMEWCATTRDLD 262 Query: 594 NEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPA-- 651 +EE + +NPALG +S E +RK+ N ++ F + +L W ++ + +PA Sbjct: 263 DEENYYRSNPALGYRISIERIRKE-----RNRHSDKTFGRERLGLWNDNAFNAV-IPADQ 316 Query: 652 WDE---CKGTVFKSNKDLFDAFAGQS-----CWFGLDLAARRDLCSICYLFPQSDGSVDL 703 W C GTV ++ + A AG S +D A L +I + DG V + Sbjct: 317 WKSLCLCHGTVHDEHR-VEGAEAGWSRIVTPTVVAIDSAPDSSLTTISWAGKNQDGQVQI 375 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 24/193 (12%) Query: 590 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQWQNSTI-R 645 ++ + E W +NP L + + + + R+N + A F+ LN W +S I Sbjct: 317 DETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDS 376 Query: 646 WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW 705 ++ + D K V + N GQ C+ G+D + D ++ +++P W Sbjct: 377 YLNLA--DVEKAIVPEFN------IYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKW 428 Query: 706 ----RHWIPESALAKLD--RLNDGRFAKEFVPGGWLKVT---EGDVLD---FDVVYDDIE 753 +IP A ++ DG +E G+ +T +G + D ++ + + IE Sbjct: 429 HVEQHSFIPFQAAGSIEAKEKQDGINYRELETKGFCTITSHQQGLINDDEFYEWIVNYIE 488 Query: 754 ADSKRFTILGGDA 766 +S G DA Sbjct: 489 ENSLDVLFFGYDA 501 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 35.0 bits (79), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%) Query: 596 ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIRWMRMPA 651 E W +NP L + + K + RN+ + + F+ LN W Q ++ + Sbjct: 337 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 396 Query: 652 WDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSD 698 ++ F + GQ C+ G+D + D +I ++FP D Sbjct: 397 VEKAIIPEF--------SIHGQRCYIGIDYSMMSDNTAIAFVFPYLD 435 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 35.0 bits (79), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%) Query: 596 ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIRWMRMPA 651 E W +NP L + + K + RN+ + + F+ LN W Q ++ + Sbjct: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD 393 Query: 652 WDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSD 698 ++ F + GQ C+ G+D + D +I ++FP D Sbjct: 394 VEKAIIPEF--------SIHGQRCYIGIDYSMMSDNTAIAFVFPYLD 432 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 33.9 bits (76), Expect = 0.008, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 125/354 (35%), Gaps = 60/354 (16%) Query: 398 VETVCIQIDHPSHVFL-----AGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDK 452 V+ IQ++ + +FL +GKS L+A +L ++ G+ GE +A D Sbjct: 83 VDEKGIQVNLVNEIFLNLGRGSGKS-------SLMATRVLNWMILGGQYGGESLVIAYDN 135 Query: 453 KQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSF---YDVIAADAKSALGSNP 509 QA FD + S L + +K + SF + D A G N Sbjct: 136 TQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNS 195 Query: 510 SGCGADEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREM 564 S DE+ + + + + G+R Q + + S D GL + + Sbjct: 196 SLNIFDEVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLV 245 Query: 565 ERVM-EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARN 623 ER E+ D +YM E +++ W A P +G W + ++ A+ Sbjct: 246 ERFKSEEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQG 303 Query: 624 NPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAA 683 +P + F F + T + P + K T F F + G+DL+ Sbjct: 304 DPALQNKFLAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSL 355 Query: 684 RRDLCSICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 718 DL ++ ++ + Q D LW ++ L LD Sbjct: 356 IGDLTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 33.9 bits (76), Expect = 0.009, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 125/354 (35%), Gaps = 60/354 (16%) Query: 398 VETVCIQIDHPSHVFL-----AGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDK 452 V+ IQ++ + +FL +GKS L+A +L ++ G+ GE +A D Sbjct: 83 VDEKGIQVNLVNEIFLNLGRGSGKS-------SLMATRVLNWMILGGQYGGESLVIAYDN 135 Query: 453 KQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSF---YDVIAADAKSALGSNP 509 QA FD + S L + +K + SF + D A G N Sbjct: 136 TQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNS 195 Query: 510 SGCGADEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREM 564 S DE+ + + + + G+R Q + + S D GL + + Sbjct: 196 SLNIFDEVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLV 245 Query: 565 ERVM-EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARN 623 ER E+ D +YM E +++ W A P +G W + ++ A+ Sbjct: 246 ERFKSEEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQG 303 Query: 624 NPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAA 683 +P + F F + T + P + K T F F + G+DL+ Sbjct: 304 DPALQNKFLAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSL 355 Query: 684 RRDLCSICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 718 DL ++ ++ + Q D LW ++ L LD Sbjct: 356 IGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 33.1 bits (74), Expect = 0.014, Method: Compositional matrix adjust. Identities = 71/349 (20%), Positives = 123/349 (35%), Gaps = 60/349 (17%) Query: 403 IQIDHPSHVFL-----AGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAAL 457 +Q++ + +FL +GKS L+A +L ++ G+ GE +A D QA Sbjct: 88 VQVNLINEIFLNLGRGSGKS-------SLMATRVLNWMILGGQYGGESLVIAYDNTQARH 140 Query: 458 AFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSF---YDVIAADAKSALGSNPSGCGA 514 FD + S L + +K + SF + D A G N S Sbjct: 141 VFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIF 200 Query: 515 DEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM- 568 DE+ + + + + G+R Q + + S D GL + +ER Sbjct: 201 DEVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFKS 250 Query: 569 EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAE 628 E+ D +YM E +++ W A P +G W + ++ A+ +P + Sbjct: 251 EEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQ 308 Query: 629 MAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLC 688 F F + T + P + K T F F + G+DL+ DL Sbjct: 309 NKFLAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLT 360 Query: 689 SICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 718 ++ ++ + Q D LW ++ L LD Sbjct: 361 AVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 33.1 bits (74), Expect = 0.015, Method: Compositional matrix adjust. Identities = 72/351 (20%), Positives = 125/351 (35%), Gaps = 64/351 (18%) Query: 403 IQIDHPSHVFL-----AGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAAL 457 +Q++ + +FL +GKS L+A +L ++ G+ GE +A D QA Sbjct: 88 VQVNLINEIFLNLGRGSGKS-------SLMATRVLNWMILGGQYGGESLVIAYDNTQARH 140 Query: 458 AFDVAAQMVKFSPIL-----SKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGC 512 FD + S L +K K K+ + A + + D A G N S Sbjct: 141 VFDQVRNQTEASDTLRVYNENKIFKST--KQGLEFASFKTTFKKQTNDTLRAQGGNSSLN 198 Query: 513 GADEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERV 567 DE+ + + + + G+R Q + + S D GL + +ER Sbjct: 199 IFDEVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERF 248 Query: 568 M-EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPI 626 E+ D +YM E +++ W A P +G W + ++ A+ +P Sbjct: 249 KSEEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPA 306 Query: 627 AEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRD 686 + F F + T + P + K T F F + G+DL+ D Sbjct: 307 LQNKFLAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGD 358 Query: 687 LCSICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 718 L ++ ++ + Q D LW ++ L LD Sbjct: 359 LTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 32.7 bits (73), Expect = 0.021, Method: Compositional matrix adjust. Identities = 73/358 (20%), Positives = 126/358 (35%), Gaps = 68/358 (18%) Query: 398 VETVCIQIDHPSHVFL-----AGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDK 452 V+ +Q++ + +FL +GKS L+A +L ++ G+ GE +A D Sbjct: 83 VDEKGVQVNLINEIFLNLGRGSGKS-------SLMATRVLNWMILGGQYGGESLVIAYDN 135 Query: 453 KQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKT-------NSFYDVIAADAKSAL 505 QA FD V+ S L+V + K K + + D A Sbjct: 136 TQARHVFD----QVRNQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQ 191 Query: 506 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLK 560 G N S DE+ + + + + G+R Q + + S D GL Sbjct: 192 GGNSSLNIFDEVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLY 241 Query: 561 HREMERVM-EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAA 619 + +ER E+ D +YM E +++ W A P +G W + ++ Sbjct: 242 DKLVERFKSEEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYE 299 Query: 620 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 679 A+ +P + F F + T + P + K T F F + G+ Sbjct: 300 LAQGDPALQNKFLAFNMGLPMQDTAYYF-TPQ--DTKLTEFN-----LSVFNKNRTYVGI 351 Query: 680 DLAARRDLCSICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 718 DL+ DL ++ ++ + Q D LW ++ L LD Sbjct: 352 DLSLIGDLTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 32.0 bits (71), Expect = 0.031, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 536 GARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKH-IFVYMRNTPMEEDPWN 594 G R + +T N G G E+E E + DF H +F Y + ++ + Sbjct: 206 GLRKNKGTLFISTTNNVIRG--GAYDDELESWKEWVKDDDFSHWVFYYALDD--YDEVKD 261 Query: 595 EECWPHANPALGRFLSWEAMRKQAAEARNNPI--AEMAFRQFKLNQWQNSTIRWMRMPAW 652 + ANPALG LS E ++K A NP+ A++ ++F L+ ++TI ++ Sbjct: 262 SSKYIKANPALGYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNLSMTDSTTIFSKQLV-- 319 Query: 653 DECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDL 687 D+C F+G+ G D + R D+ Sbjct: 320 DKCLVPPLD--------FSGRLVAIGSDFSVRGDV 346 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 32.0 bits (71), Expect = 0.035, Method: Compositional matrix adjust. Identities = 41/205 (20%), Positives = 86/205 (41%), Gaps = 22/205 (10%) Query: 498 AADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFA 557 ++A++ GS P DE A++D + +G+G R + + TT G G Sbjct: 184 TSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHL--TTDGY-VRGSV 240 Query: 558 GLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQ 617 + + + + + + P+ K +F ++ ++ N+ W ANP + L ++ +R + Sbjct: 241 LDDRKVLAQQVLNGEKPNSK-MFPFICKLDSPDEVQNKTKWAKANPMI---LYYKPLRIE 296 Query: 618 A------AEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFA 671 A++ + + E ++ +T+ WD+ K T N+ + + Sbjct: 297 IDQHWDDAQSSSEIMVEFMTKRMNCPTQDPTTV----AVKWDDIKAT----NQPM-PSLK 347 Query: 672 GQSCWFGLDLAARRDLCSICYLFPQ 696 G+D A RD C++ LF + Sbjct: 348 MAPAIGGIDFADVRDFCAVGLLFKK 372 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 31.6 bits (70), Expect = 0.039, Method: Compositional matrix adjust. Identities = 69/328 (21%), Positives = 121/328 (36%), Gaps = 61/328 (18%) Query: 405 IDHPSHVFLAGKSLTPTHNTELLAGIML---YLLVADGEQSGEIYGVARDKKQAALAFDV 461 +D+ + + S+ LA I++ Y +V S ++ + D + A F+ Sbjct: 121 VDNGTRFTTSNISIARQQGKTWLASILINFYYFVVCWNATSQDLLVASYDSEHATKLFND 180 Query: 462 AAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQ 521 + K ILS D ++R +A+T VIA + K+ + S Sbjct: 181 VSLQAK--TILSLPEFADDARERGVEAQTTQ---VIAKNTKNTIRKGTS----------- 224 Query: 522 DGGMWDSLRTGMGSGARVQPLMVA-STTAGNDTEGFAGLKHREMERVM------------ 568 GG +DS + + L A + T T G G+K+R ++ Sbjct: 225 QGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKN 284 Query: 569 -EDPDNPDFKH--------IFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAA 619 ED +H +F + + E++ + E W +NP L + Q A Sbjct: 285 DEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETWAKSNPNLLELPKSKRDNLQNA 344 Query: 620 --EARNNPIAEMAFRQF---KLNQW----QNSTIRWMRMPAWDECKGTVFKSNKDLFDAF 670 + RN+ E F LN W QNS + + D + ++ D FD Sbjct: 345 LNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYL------SLDNIQRSII----DRFDV- 393 Query: 671 AGQSCWFGLDLAARRDLCSICYLFPQSD 698 G+ + G D + D S +++P +D Sbjct: 394 NGRDVFIGFDGSQTNDNTSFGFIYPYTD 421 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 29.6 bits (65), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Query: 590 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIR 645 ++ + E W +NP L + + K + R++ + F+ LN W + ST Sbjct: 307 DETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDS 366 Query: 646 WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW 705 ++ + ++ F + G + G D + D ++ +++P DG + Sbjct: 367 YLNLKDVEDAVYNDFNID--------GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQ 418 Query: 706 RHWIP 710 +IP Sbjct: 419 HSFIP 423 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 29.3 bits (64), Expect = 0.22, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 88/244 (36%), Gaps = 44/244 (18%) Query: 632 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI- 690 R+F LNQ S W+ WD+C T + G G D + D ++ Sbjct: 336 RKF-LNQVNASEDSWLAPADWDKCHSTSLRP------LTKGDKITLGFDGSKSNDWTALV 388 Query: 691 -CYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVY 749 C + DG+V L+ +W PE+ G KE V V ++VV Sbjct: 389 ACRV---EDGAVFLI-DYWNPEN-------YPSGEVPKEDVDA----VVRSMKDKYEVVA 433 Query: 750 DDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYED------IFAYKNDFAHMSDSMH 803 AD K F DQW ++ +RT F + + Sbjct: 434 --FRADVKEFEAY---VDQWG------QLFRRTIKVNASPGNPVAFDMRGQTKRFALDCE 482 Query: 804 RIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVM 863 R + L + L H NP+ + + YD IR KP + + ++IDA +V+ Sbjct: 483 RFADAVLEQELVHDNNPVMKAHITNAHRHPTIYDAISIR--KPSK-ASKRKIDAAVCSVL 539 Query: 864 ATNA 867 A A Sbjct: 540 AFGA 543 Score = 26.2 bits (56), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 734 WLKVTEGDVLDFDVVYDDIEA 754 WL + G+V+D ++YD +EA Sbjct: 255 WLDILAGEVIDTGILYDALEA 275 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 26.2 bits (56), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 734 WLKVTEGDVLDFDVVYDDIEA 754 WL + GD +D V+YD +EA Sbjct: 255 WLDILAGDAIDTGVLYDALEA 275 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 25.8 bits (55), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 148 AELVASDHHLWAVNDRLKGERVIDTAELYRTQTYGARGDRRYTVTVPEALDRDEAPLPLD 207 AEL A WA D + R D R +YG G + P D ++ PL L Sbjct: 243 AELQADGSLFWAPTDEV---RFDDKDLRERELSYGKGGFALQFMLNPNLSDMEKYPLKLR 299 Query: 208 PYILGAWLGDGTAT 221 +I+G + D T Sbjct: 300 DFIVGTFAQDKGPT 313 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 25.8 bits (55), Expect = 2.6, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Query: 481 YKKRIYDAKTNSFYDVIAADAKSALGSNPS----GCGADEILAW 520 YK + DA ++FYD + A A+ +NP+ + +LAW Sbjct: 314 YKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAW 357 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 481 YKKRIYDAKTNSFYDVIAADAKSALGSNPS 510 YK + DA ++FYD + A A+ +NP+ Sbjct: 570 YKIDVVDALIDAFYDAMYAFEDYAITNNPT 599 >gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: PacB # Family: family:all:144 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006576;genbank:gi:46401730;genbank:GeneID :2777432 Length = 494 Score = 25.0 bits (53), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 494 YDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSG 536 YD IAA A G P+ + I + Q G W S+ +G G+G Sbjct: 20 YDWIAA-ADVLFGKTPTWQQDEIIESTQQDGSWTSVTSGHGTG 61 >gi|11632|lcl|protein:vir:78892 Length: 228 # NCBI annotation: Tsh # Family: family:all:47 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468852;genbank:gi:157325426;genbank:Ge neID:5601889 Length = 228 Score = 24.6 bits (52), Expect = 4.6, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 386 TNTITSVTPVPTVETVCIQIDHPSHVFLAGKSLTPT 421 +N TP PT+E + +D S G+++ T Sbjct: 130 SNGTPVFTPAPTIEPTSVTVDSASKTVKVGETIKIT 165 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 24.6 bits (52), Expect = 5.5, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 77 RRYEIAWIELARKNGKALDVETPIL 101 RR+ A I +ARKNGK + + +L Sbjct: 108 RRFRKAMISVARKNGKTILIAGILL 132 >gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240830;genbank:gi:66394694;genbank:GeneID :5133902 Length = 186 Score = 23.9 bits (50), Expect = 9.3, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240756;genbank:gi:66396432;genbank:GeneID :5133776 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF022 # Family: family:all:913 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240466;genbank:gi:66396135;genbank:GeneID :5133504 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240618;genbank:gi:66396288;genbank:GeneID :5133680 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: similar to phage Spp1 gp17.1 # Family: family:all:913 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510944;genbank:gi:17426278;genbank:GeneID :927369 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240683;genbank:gi:66396358;genbank:GeneID :5133751 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240543;genbank:gi:66396214;genbank:GeneID :5133573 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240392;genbank:gi:66396063;genbank:GeneID :5133471 Length = 186 Score = 23.9 bits (50), Expect = 9.5, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 694 FPQSDGSVDLLWRHWIPESALAKLDRLND 722 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.135 0.422 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,196 Number of Sequences: 514 Number of extensions: 21209 Number of successful extensions: 293 Number of sequences better than 100.0: 83 Number of HSP's better than 100.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 133 length of query: 887 length of database: 206,069 effective HSP length: 80 effective length of query: 807 effective length of database: 164,949 effective search space: 133113843 effective search space used: 133113843 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)