BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021306.1_cdsid_YP_008051633.1 [gene=8] [protein=terminase large subunit] [protein_id=YP_008051633.1] [location=2277..3947] (556 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 1158 0.0 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 964 0.0 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 159 6e-41 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 159 7e-41 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 157 4e-40 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 155 1e-39 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 152 1e-38 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 150 4e-38 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 146 7e-37 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 144 2e-36 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 142 8e-36 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 142 1e-35 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 141 2e-35 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 141 2e-35 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 132 1e-32 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 123 5e-30 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 123 6e-30 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 123 6e-30 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 122 2e-29 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 121 2e-29 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 121 3e-29 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 120 3e-29 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 119 1e-28 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 118 2e-28 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 118 2e-28 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 112 8e-27 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 111 2e-26 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 105 9e-25 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 105 2e-24 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 99 1e-22 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 81 3e-17 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 81 3e-17 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 81 3e-17 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 81 3e-17 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 81 3e-17 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 80 6e-17 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 70 6e-14 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 66 1e-12 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 65 3e-12 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 63 1e-11 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 62 1e-11 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 55 3e-09 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 52 1e-08 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 52 2e-08 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 52 2e-08 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 47 7e-07 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 47 7e-07 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 47 8e-07 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 42 2e-05 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 42 3e-05 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 41 3e-05 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 41 4e-05 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 41 4e-05 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 41 4e-05 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 40 5e-05 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 40 6e-05 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 39 1e-04 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 38 3e-04 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 37 7e-04 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 37 8e-04 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 36 0.001 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 35 0.002 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 33 0.009 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 31 0.033 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 30 0.076 gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp... 29 0.15 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 28 0.22 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 27 0.91 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 27 0.92 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 25 1.8 gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: Pa... 25 2.3 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 25 2.4 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 25 2.4 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 25 2.4 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 25 2.4 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 24 5.8 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 23 6.1 gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: put... 23 6.3 gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF... 23 8.6 gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: OR... 23 8.8 gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF... 23 8.8 gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF... 23 8.8 gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: sim... 23 8.8 gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF... 23 8.8 gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF... 23 8.8 gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF... 23 8.8 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/556 (99%), Positives = 555/556 (99%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR Sbjct: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 Query: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARD 120 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARD Sbjct: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARD 120 Query: 121 KKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSG 180 KKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSG Sbjct: 121 KKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSG 180 Query: 181 CGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDP 240 CGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDP Sbjct: 181 CGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDP 240 Query: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF 300 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF Sbjct: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF 300 Query: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC Sbjct: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 Query: 361 YLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDD 420 YLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDD Sbjct: 361 YLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDD 420 Query: 421 IEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLA 480 IEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLA Sbjct: 421 IEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLA 480 Query: 481 KNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNAFYTR 540 KNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNAFYTR Sbjct: 481 KNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNAFYTR 540 Query: 541 GGDYDSVYEEREALSV 556 G DYDSVYEEREALSV Sbjct: 541 GNDYDSVYEEREALSV 556 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/464 (99%), Positives = 463/464 (99%) Query: 93 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 152 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK Sbjct: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 Query: 153 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 212 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM Sbjct: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 Query: 213 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP 272 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP Sbjct: 544 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP 603 Query: 273 ALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSN 332 ALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSN Sbjct: 604 ALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSN 663 Query: 333 KDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDG 392 KDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDG Sbjct: 664 KDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDG 723 Query: 393 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTY 452 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIEAD+KRFTILGGDADQWSSDPVIQEIEKRTY Sbjct: 724 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADAKRFTILGGDADQWSSDPVIQEIEKRTY 783 Query: 453 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRP 512 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRP Sbjct: 784 LYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRP 843 Query: 513 DKPDRDMAAKRIDAVPTAVMATNAFYTRGGDYDSVYEEREALSV 556 DKPDRDMAAKRIDAVPTAVMATNAFYTRG DYDSVYEEREALSV Sbjct: 844 DKPDRDMAAKRIDAVPTAVMATNAFYTRGNDYDSVYEEREALSV 887 Score = 202 bits (514), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 116/196 (59%), Positives = 132/196 (67%), Gaps = 26/196 (13%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR Sbjct: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 Query: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGK-----TELLAG----------IMLYLLV 105 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGK T +L G + Y+ Sbjct: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKALDVETPILTGNGWKKMGDIQVGDYVHA 120 Query: 106 ADGEQSGEIYGVARDKKQA-ALAFDVAAQMVKFSPIL---SKRLK---VVD----YKKRI 154 ADG + Y R + ++ F A++V L + RLK V+D Y+ + Sbjct: 121 ADGTLARVSYVSERHWRDCFSVQFADGAELVASDHHLWAVNDRLKGERVIDTAELYRTQT 180 Query: 155 YDAKTNSFYDVIAADA 170 Y A+ + Y V +A Sbjct: 181 YGARGDRRYTVTVPEA 196 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 159 bits (403), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 139/522 (26%), Positives = 232/522 (44%), Gaps = 38/522 (7%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFI--LEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIA 82 A KA F + +L HTKG++ K+ + LE WQ IV FG V+ G RR+ Sbjct: 58 AEKAAKFIQ-LLPHTKGEWAFKRMLITLEPWQLF-IVCCAFGWVQK----GTKLRRFREV 111 Query: 83 WIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILS 142 + E+ RKNGK+ + AG+ LY D E E+Y A +KQA F A M K +P+L Sbjct: 112 YTEIPRKNGKSAISAGVALYCFTCDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPLLV 171 Query: 143 KRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGM 202 + + + + + ++ + + G++P DE ++ ++ TGM Sbjct: 172 EAFGIEVNASNLNRPEDGARFEPLIGNPGD--GASPHCAIVDEYHEHPTDALYTTMLTGM 229 Query: 203 GSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEED 260 GAR QPLM A TTAG + EG K RE+ ++ P+N F I+ T E D Sbjct: 230 --GARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNNELFGVIY-----TVDEGD 282 Query: 261 PWNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMP 319 W + + ANP +G + + + Q A NN F+ LN W + + + Sbjct: 283 DWTDPKVLEKANPNIGVSVYRDFLLSQQQRAINNARHAGVFKTKHLNVWVAARTAFFNLV 342 Query: 320 AWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSV---DLLWR 375 +W C+ + F GQ C DLA + D+ S+ LF + DG + R Sbjct: 343 SWQNCEDKTLT-----LELFEGQPCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPR 397 Query: 376 HWIPESALAKLDRLNDGRFAKEF---VPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILG 432 W+P + +++ D R A+ F V G+L VT+G +D+ + ++ +A +K + Sbjct: 398 FWVPYDTVYSVEKNEDRRTAERFQKWVEMGFLTVTDGAEVDYRYILEEAKAANKLNPVSE 457 Query: 433 GDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLAR 492 D + + + ++ I ++ +MSD M + + H GNP+ Sbjct: 458 SPIDPFGATGLSHDLADENLNPVTII---QNYTNMSDPMKELEAAIESGRFHHDGNPIMT 514 Query: 493 FCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMAT 534 +C + + +++ KP ++ A +ID +MA Sbjct: 515 WCIGNVVGKTIPGNDDVV---KPIKEQAENKIDGAVALIMAV 553 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 159 bits (403), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 140/519 (26%), Positives = 234/519 (45%), Gaps = 43/519 (8%) Query: 30 AFFEEILVHTKGQ--YTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELA 87 A F ++L HTKG+ + R LE WQ ++ FG V G RR+ + E+ Sbjct: 62 AKFIQLLPHTKGEWAFKRMPITLEPWQLF-VICCAFGWVNK----GSRLRRFREVYTEIP 116 Query: 88 RKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKV 147 RKNGK+ + AG+ LY D E E+Y A +KQA F A M K +P+L++ + Sbjct: 117 RKNGKSAISAGVALYCFACDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGI 176 Query: 148 VDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGAR 207 + + + ++ + + GS+P DE ++ ++ TGM GAR Sbjct: 177 EVNASNMNRPEDGARFEPLIGNPGD--GSSPHCAVVDEYHEHATDALYTTMLTGM--GAR 232 Query: 208 VQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNE- 264 QPLM A TTAG + EG K RE+ ++ P++ F I+ T E D W + Sbjct: 233 RQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIY-----TVDEGDDWTDP 287 Query: 265 ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDEC 324 + ANP +G + E + Q A+NN F+ LN W ++ + + +W C Sbjct: 288 QVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWVSARSAYFNLVSWQSC 347 Query: 325 KGTVFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSV---DLLWRHWIP 379 + +K L + F GQ C DLA + D+ S+ L+ + DG + R W+P Sbjct: 348 E------DKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVP 401 Query: 380 ESALAKLDRLNDGRFAKEF---VPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDAD 436 + +++ D R A+ F V G L VT+G +D+ + ++ +A +K + D Sbjct: 402 YDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPID 461 Query: 437 QWSSDPVIQEIEKRTYLYEDI--FAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFC 494 + + + ++ ED+ +FA+MSD M + + H GNP+ +C Sbjct: 462 PFGATGLSHDLAD-----EDLNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWC 516 Query: 495 FSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMA 533 + + +L+ KP ++ A +ID +M Sbjct: 517 IGNVVGKNMPGNDDLV---KPVKEQAENKIDGAVALIMT 552 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 157 bits (396), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 146/521 (28%), Positives = 240/521 (46%), Gaps = 40/521 (7%) Query: 32 FEEILVHTKGQYT--RKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARK 89 F +++ HTKG+++ + K + E WQ I +FG V+ KRR+ A+ E+ RK Sbjct: 59 FMQLMPHTKGKWSASKSKLVFEPWQVF-IEANIFGWVKRD----TGKRRFREAYEEIPRK 113 Query: 90 NGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVD 149 NGK+ LA +YL ADGE E+Y A +KQA F A M L R + Sbjct: 114 NGKSARLAARGIYLFAADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRFGIEL 173 Query: 150 YKKR-----IYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGS 204 + ++ + S ++ + + G++P DE + D+++TGM Sbjct: 174 SGNQKNPGPMFVMEDMSKFETVIGNPGD--GASPHAALVDEYHEHDTDALVDTMQTGM-- 229 Query: 205 GARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNE 264 GAR QPL+ TTAG++ G K R++ R++E + +Y T E+DPW++ Sbjct: 230 GAREQPLLSIITTAGSNLGGPCHEKRRDVIRILEGQTIDETIFGIIY---TIDEDDPWDD 286 Query: 265 EC-WPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDE 323 ANP G + + + Q +A+ + + AFR LNQW + WM M AW Sbjct: 287 PASLIKANPNYGVSVFPDFLLAQLQQAKRSASKQNAFRTKHLNQWVGARTVWMNMLAWQR 346 Query: 324 CKGTVFKSNKDLFDA-FAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESA 382 K +D A AG CW LDLA+++D+ ++ LF ++ G + R + PE+A Sbjct: 347 QK-------RDFTIADMAGCRCWMALDLASKKDVAALVMLFEKA-GQFYCIPRFYAPEAA 398 Query: 383 LAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDP 442 + ++ + FA E G L +T G + D+ + DI +K+ + D W ++ Sbjct: 399 AEENEKYQN--FALE----GHLVLTPGSMTDYAFIEADILDLAKQIDLQDAAFDDWQANY 452 Query: 443 VIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARV 502 +I + + D + +MSD M + +A+ L H GNP+ + A++ Sbjct: 453 LITRLSNTSIPVVD---FNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKI 509 Query: 503 AAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNAFYTRGGD 543 A + I P K + + +ID T +MA G D Sbjct: 510 DAKEN--IYPRKENDNDPNCKIDGPVTLIMAMGRALVAGVD 548 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 155 bits (392), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 146/560 (26%), Positives = 245/560 (43%), Gaps = 39/560 (6%) Query: 4 CGYTLDDIECTEVGA---HFCVPRANKAQAFFEEILVHTKGQ--YTRKKFILEDWQRDDI 58 C LDD+ ++ A F +A K + +L HTKG+ Y R+ LE WQ + Sbjct: 34 CQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQ-LLPHTKGEWAYKRQLVTLEPWQLFGL 92 Query: 59 VRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVA 118 FG V F RR+ ++ E+ RKNGK+ + AG+ + + AD E E+Y A Sbjct: 93 A-CTFGWVRKKTGF----RRFRESYWEVPRKNGKSVIAAGVGIAMFTADDEFGAEVYCGA 147 Query: 119 RDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNP 178 ++QA F A MVK SP+L + L + + + + S ++ I + G++P Sbjct: 148 TTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALNRPEDGSRFEPIIGNPGD--GASP 205 Query: 179 SGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVME 238 S DE ++++ TGM GAR QPLM TTAG + EG K R++ ++E Sbjct: 206 SCAIEDEYHEHDTNAQYETMLTGM--GARRQPLMFVITTAGANIEGPCYDKRRQVIEMLE 263 Query: 239 D--PDNPDFKHIFVYMRNTPMEEDPWNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPI 295 PD+ F I+ T E+D W + ANP +G + E + Q A + Sbjct: 264 GTVPDDELFGWIW-----TIDEDDDWTDPRVLAKANPNIGISVYQEYLESQQQRAIKSAR 318 Query: 296 AEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRD 355 F+ LN W ++ + + W C+ + F GQ C LD+A + D Sbjct: 319 FTNTFKTKHLNVWTSAKAGYFNLEDWKACEDRSLS-----LEQFEGQDCVLALDMARKLD 373 Query: 356 LCSICYLFPQS-DGSVDLLW---RHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDV 411 L S+ LF + DG R W+PE + + + +V G+L T+G Sbjct: 374 LNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNHGFLIETDGAE 433 Query: 412 LDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSM 471 +D+ + ++ + ++R + D + + ++ I ++ +MSD M Sbjct: 434 IDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQLADEGLTPVTIV---QNYTNMSDPM 490 Query: 472 HRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAV 531 + ++ H GNP+ +C S + + +++RP K D +ID + Sbjct: 491 KELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDDVVRPVKQGND---NKIDGAVALI 547 Query: 532 MATN-AFYTRGGDYDSVYEE 550 MA A D +S+Y++ Sbjct: 548 MAVGRAMLADRVDSESIYDQ 567 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 152 bits (384), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 145/536 (27%), Positives = 234/536 (43%), Gaps = 57/536 (10%) Query: 24 RANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAW 83 R + AF E + +G+ + L+ +Q+D I+ Y + G ++A Sbjct: 3 RGERVIAFIERFCIVPEGKLIGQPMRLDPFQKDFIL------AVYDNPAGT-----DMAI 51 Query: 84 IELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILS 142 + +ARKNGKT L+AGI+L LV + Q+ +I A ++QAA+ F++A +MV +P L Sbjct: 52 LSIARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQ 111 Query: 143 KRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADE---ILAWQDGGMWDSLR 199 + + + K++ N Y ++A+ K+ G +P DE + QD D++ Sbjct: 112 EIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDD-FIDAIT 170 Query: 200 TGMGSGARVQPLM-VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPME 258 T GA PL+ V ST A ND A L ++ ++ D HI ++ P + Sbjct: 171 TA--QGAHENPLLIVISTQAAND----ADLLSIWIDDAVKSKD----PHIVCHVYEAPKD 220 Query: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRM 318 D E W ANPALG F S + M +QA +A P E FR LNQ ++ ++ Sbjct: 221 ADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISR 280 Query: 319 PAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICYLFPQSDGSVDLLWRHW 377 W+ C + + W+ GLDL+AR DL ++ DG D+ W Sbjct: 281 SVWELCGEMPINTPRK----------WYAGLDLSARNDLTALVIAGEADDGVWDVFPFFW 330 Query: 378 IPESAL---AKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGD 434 P+ L K DR + +E G L+ T G +D+ V DI F + Sbjct: 331 TPQKTLEERTKTDRAPYDVWVRE----GLLRTTPGASVDYSFVVADIAEIIGDFDLTSMA 386 Query: 435 ADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFC 494 D+W D ++ + L + + F M ++ + L +RH +P+ C Sbjct: 387 FDRWRIDQFRKDADA-IGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMC 445 Query: 495 -FSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNA----FYTRGGDYD 545 +A + AA + L D+ A RID + M+ A +GGD+D Sbjct: 446 AVNAVVVKDAAGNRKL------DKSKATGRIDGMVAMTMSVGAANGEVTEQGGDFD 495 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 150 bits (378), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 144/536 (26%), Positives = 234/536 (43%), Gaps = 57/536 (10%) Query: 24 RANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAW 83 R + AF E + +G+ + L+ +Q++ I+ Y + G ++A Sbjct: 3 RGERVIAFIERFCIVPEGKLIGQPMRLDTFQKEFIL------AVYDNPAGT-----DMAI 51 Query: 84 IELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILS 142 + +ARKNGKT L+AGI+L LV + Q+ +I A ++QAA+ F++A +MV +P L Sbjct: 52 LSIARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQ 111 Query: 143 KRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADE---ILAWQDGGMWDSLR 199 + + + K++ N Y ++A+ K+ G +P DE + QD D++ Sbjct: 112 EIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDD-FIDAIT 170 Query: 200 TGMGSGARVQPLM-VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPME 258 T GA PL+ V ST A ND A L ++ ++ D HI ++ P + Sbjct: 171 TA--QGAHENPLLIVISTQAAND----ADLLSIWIDDAVKSKD----PHIVCHVYEAPKD 220 Query: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRM 318 D E W ANPALG F S + M +QA +A P E FR LNQ ++ ++ Sbjct: 221 ADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISR 280 Query: 319 PAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICYLFPQSDGSVDLLWRHW 377 W+ C + + W+ GLDL+AR DL ++ DG D+ W Sbjct: 281 SVWELCGEMPINTPRK----------WYAGLDLSARNDLTALVIAGEADDGVWDVFPFFW 330 Query: 378 IPESAL---AKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGD 434 P+ L K DR + +E G L+ T G +D+ V DI F + Sbjct: 331 TPQKTLEERTKTDRAPYDVWVRE----GLLRTTPGASVDYSFVVADIAEIIGDFDLTSIA 386 Query: 435 ADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFC 494 D+W D ++ + L + + F M ++ + L +RH +P+ C Sbjct: 387 FDRWRIDQFRKDADA-IGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMC 445 Query: 495 -FSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNA----FYTRGGDYD 545 +A + AA + L D+ A RID + M+ A +GGD+D Sbjct: 446 AVNAVVVKDAAGNRKL------DKSKATGRIDGMVAMTMSVGAANGEVTEQGGDFD 495 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 146 bits (368), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 139/544 (25%), Positives = 239/544 (43%), Gaps = 40/544 (7%) Query: 4 CGYTLDDIECTEVGAHFCVPRANKAQ--AFFEEILVHTKGQ--YTRKKFILEDWQRDDIV 59 C LDD+E + + +KA+ A F ++L HTKG+ + R LE WQ I Sbjct: 28 CQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKGEWAFKRMPITLEPWQLFCIC 87 Query: 60 RPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVAR 119 +FG V RR+ A+ E+ RKNGK+ + AG+ LY+ D E E+Y A Sbjct: 88 -VVFGWVRKKSGL----RRFREAYNEIPRKNGKSAMSAGVGLYMFACDDEFGAEVYSGAT 142 Query: 120 DKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPS 179 +KQA F A M + + L + + + + + + + ++ + D G++PS Sbjct: 143 TEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQSMSRPEDGARFEPLIGDPGD--GASPS 200 Query: 180 GCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED 239 DE Q ++ +++TGM GAR QPL+ TTAG + EG K RE+ ++E Sbjct: 201 CALIDEYHEHQTDALYQTMQTGM--GARRQPLIFGITTAGYNIEGPCYDKRREVIEMLEG 258 Query: 240 --PDNPDFKHIFVYMRNTPMEEDPWNEE-CWPHANPALGRFLSWEAMRKQAAEARNNPIA 296 P++ F I+ T + D W + ANP +G + + + Q A NNP Sbjct: 259 IVPNDELFGIIY-----TIDDGDDWTDPAVLRKANPNMGISVYSDYLLSQQRAAINNPRK 313 Query: 297 EMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDL 356 F+ LN W + + + W +C+ + F G +C DLA + DL Sbjct: 314 VGVFKTKHLNIWVAAKDAFFNLVNWQKCEDRSLT-----LERFEGHTCILAFDLARKLDL 368 Query: 357 CSICYLFPQS-DGSVD---LLWRHWIPESALAKLDRLNDGRFAKEF---VPGGWLKVTEG 409 ++ LF + DG + + ++P + D + D R A+ + V GG++ VT+G Sbjct: 369 NAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSAD-VTDSRTAERYQKWVEGGFITVTDG 427 Query: 410 DVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSD 469 +D+ + + + ++ + D + + + + ++ +MSD Sbjct: 428 AEIDYREILESAKEANRLNAVEESPIDPHGATNLSHHLADENL---NPITIIQNYTNMSD 484 Query: 470 SMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPT 529 M + A H GNP+ +C S + D +++RP K + +ID Sbjct: 485 PMKELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQGNE---NKIDGAVA 541 Query: 530 AVMA 533 +MA Sbjct: 542 LIMA 545 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 144 bits (363), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 141/529 (26%), Positives = 220/529 (41%), Gaps = 32/529 (6%) Query: 32 FEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNG 91 F ++L H+ G+ +K LE WQ I +FG V D+ KRR+ A+I +ARKNG Sbjct: 62 FVQLLPHSSGELAGQKLKLEPWQ-SFIFCSIFGWVTKKDK----KRRFREAYIRVARKNG 116 Query: 92 KTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYK 151 K+ AG+ +Y ADGE S E+Y A QA F A QM P L R + + Sbjct: 117 KSFFAAGVGIYTFCADGENSAEVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWT 176 Query: 152 KRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQP 210 D+ T V A A K G +P DE M++++ GM GAR QP Sbjct: 177 ----DSLTRPDGSVFAPMAGKPGDGDSPHCAIIDEYHEHDTDHMYEAMTMGM--GARSQP 230 Query: 211 LMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHA 270 L + TTAG+ E K +E++ +E + +F + + +D + + A Sbjct: 231 LTLIITTAGSSLESPCYDKDKEVKEAIEGITCNE--RLFGMIYELDVGDDWTDPKNLIKA 288 Query: 271 NPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFK 330 NP L + + + + A+ P AF+ +LN W + + M W + K Sbjct: 289 NPNLNVSVKYSDLVELLEVAKQVPRKVNAFKTKRLNIWVSGKSAFYNMEQWKAAEDKNLK 348 Query: 331 SNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW----RHWIPESALAKL 386 + FA +C GLDLA + D+ + LF + + + W+PE + Sbjct: 349 -----LEDFANDTCNVGLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTT 403 Query: 387 D--RLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSSDPVI 444 D L ++F G L+ T+G D+ + I I D D + + Sbjct: 404 DPKLLKTADRYQKFYEMGALEATDGAEADYREILASILDMQGENRIDEIDIDPAGATALR 463 Query: 445 QEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAA 504 ++E + DI + D+ +MS +M + H GNP+ +C S + Sbjct: 464 HQLEDYGFTVVDI---RQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIP 520 Query: 505 YDPNLIRPDKPDRDMAAKRIDAVPTAVMA-TNAFYTRGGDYDSVYEERE 552 +L+RP K D +ID A T A SVY+E + Sbjct: 521 GSDDLVRPTKGDNQ---SKIDGATALFNAMTRAMLNESSGGTSVYDEED 566 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 142 bits (359), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 135/520 (25%), Positives = 226/520 (43%), Gaps = 34/520 (6%) Query: 23 PRANKAQAFFEEILVHTKGQYT-RKKFI-LEDWQRDDIVRPLFGRVEYSDEFGCYKRRYE 80 P A + + E+L HTKG++ RK+ + LE WQ+ ++ FG + KRR+ Sbjct: 54 PEAAERKLALIELLPHTKGEWAFRKQLVTLEPWQKFGLM-ATFGWLNKR----TGKRRFR 108 Query: 81 IAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPI 140 ++ E+ RKNGK+ + AG+ + + V D E E+Y A +KQA F A MVK SP Sbjct: 109 ESYWEVPRKNGKSVIAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPARLMVKRSPE 168 Query: 141 LSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRT 200 L + + + S ++ + + G++PS DE +++++ T Sbjct: 169 LIVAADIEVNASNMNKPEDGSRFEPLIGNPGD--GASPSCSIVDEYHEHDSAALYETMLT 226 Query: 201 GMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPME 258 GM GAR QPLM TTAG + EG K R++ ++E PD+ F I+ T E Sbjct: 227 GM--GARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIW-----TIDE 279 Query: 259 EDPWNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMR 317 D W + ANP +G + + + Q A + F+ LN W ++ + Sbjct: 280 GDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFN 339 Query: 318 MPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW-- 374 + W C+ + F GQ C LD+A + DL S+ LF DG Sbjct: 340 LEDWKSCEDRSLT-----LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVA 394 Query: 375 -RHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGG 433 R W+PE + + + +V G L T+G +D+ + ++ + ++ + Sbjct: 395 PRFWVPEETVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCT 454 Query: 434 DADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARF 493 D + + ++E I ++ +MSD M + A H GNP+ + Sbjct: 455 PLDPHGATNLSHQLEDEGLTPVTIV---QNYTNMSDPMKELEAAITAGRFHHDGNPIMTW 511 Query: 494 CFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMA 533 C S + + +++RP K D +ID +MA Sbjct: 512 CVSNVIGKNLPGNDDVVRPIKQGND---NKIDGAVALIMA 548 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 142 bits (357), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 137/538 (25%), Positives = 229/538 (42%), Gaps = 35/538 (6%) Query: 23 PRANKAQAFFEEILVHTKGQYTRKK--FILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYE 80 P A + + E+L HTKG++ K LE WQ+ ++ FG + KRR+ Sbjct: 54 PEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLM-ATFGWLNKR----TGKRRFR 108 Query: 81 IAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPI 140 ++ E+ RKNGK+ AG+ + + V D E E+Y A +KQA F A MVK SP+ Sbjct: 109 ESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPM 168 Query: 141 LSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRT 200 L + + S ++ I + G++PS DE +++++ T Sbjct: 169 LIDSAGIEVNASNMNKPADGSRFEPIIGNPGD--GASPSCAIVDEYHEHDSAALYETMLT 226 Query: 201 GMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPME 258 GM GAR QPLM TTAG + EG K R++ ++E PD+ F I+ T E Sbjct: 227 GM--GARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIW-----TIDE 279 Query: 259 EDPWNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMR 317 D W + ANP +G + + + Q A + F+ LN W ++ + Sbjct: 280 GDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFN 339 Query: 318 MPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW-- 374 + W C+ + F GQ C LD+A + DL S+ LF DG Sbjct: 340 LEDWKSCEDRSLT-----LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVA 394 Query: 375 -RHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGG 433 R W+PE + + + +V G L T+G +D+ + ++ + ++ + Sbjct: 395 PRFWVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCT 454 Query: 434 DADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARF 493 D + + ++ I ++ +MSD M + + H GNP+ + Sbjct: 455 PLDPHGATNLSHQLADEGLTPVTIV---QNYTNMSDPMKELEAAITSGRFHHDGNPIMTW 511 Query: 494 CFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATN-AFYTRGGDYDSVYEE 550 C S + + +++RP K D +ID +MA A D +S+Y++ Sbjct: 512 CVSNVIGKNLPGNDDVVRPIKQGND---NKIDGAVALIMAVGRAMLADRVDSESIYDQ 566 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 141 bits (356), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 138/520 (26%), Positives = 235/520 (45%), Gaps = 56/520 (10%) Query: 38 HTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLA 97 H+KG K IL W + + +E RR+ A+I++ARKN K++L A Sbjct: 67 HSKGVLEGKPIILNSW-----AKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEA 121 Query: 98 GIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDA 157 G+ Y + A G + E+Y + ++ QA + F+ M S L KR K +K I Sbjct: 122 GMAGYEIGAKGYNAAEVYTLGVERDQAKIVFEEWELMA--SKPLKKRFKFT--QKVIKHK 177 Query: 158 KTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVAST 216 K+NSF ++ A K+ G NP DE A + M+D +++GM AR +PL+V T Sbjct: 178 KSNSFIKHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGM--MARTEPLLVIIT 235 Query: 217 TAGNDTEGFAG-LKHREMERVMEDP-DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL 274 TAG D E A ++ + +++ +N + FV + E+DP++E+ W ANP L Sbjct: 236 TAGEDYEETACYYEYLDCCSILDGTFENEKY---FVMICELEDEDDPFDEKAWIKANPVL 292 Query: 275 GRFLS-WEAMRKQAAEARN--NPIAEMAFRQFKLNQWQNS-TIRWMRMPAWDECKGTVFK 330 + E+MR+ A A+N N + F N + + +++ + W CK + Sbjct: 293 CTYEEGIESMRQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKENI-- 350 Query: 331 SNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVD---LLWRHWIPESALAKLD 387 + F G C+ G+DL+ DL SI + FP D + L + +IP + + Sbjct: 351 ----TLEKFRGHDCYIGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFIPAEVVKEKM 406 Query: 388 RLNDGRF----AKEFVPGGWL---KVTEGDVLDFDVVYDDIEADSKRFTILGGDADQWSS 440 + ++ + +KE GWL + EG ++D + + IE+ K + + + + S Sbjct: 407 KTDNVPYNIWSSKE---KGWLIKTEANEGQIVDLWAILNTIESIVKEYEL---NVIEVSY 460 Query: 441 DP-----VIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCF 495 DP ++ E+E+R Y + A ++++ + K + H N L +C Sbjct: 461 DPHGAAMLVSELERRDY---NCVECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCV 517 Query: 496 SACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATN 535 E D N K + KRID + + + A N Sbjct: 518 QNAEK-----DTNSFGEIKISKKSRFKRIDPLASCIFAHN 552 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 141 bits (355), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 140/540 (25%), Positives = 221/540 (40%), Gaps = 47/540 (8%) Query: 32 FEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNG 91 F ++L H+ G +K E WQ I +FG V + KRR++ +I + RKNG Sbjct: 63 FVQLLPHSSGDLKGQKLKAEPWQLF-IFSSIFGWVTKKGK----KRRFKETYIRVGRKNG 117 Query: 92 KTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYK 151 K+ AGI +Y+ ADGE + E+Y A QA F A+QM K P L R V + Sbjct: 118 KSFFAAGIGMYMFCADGENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWA 177 Query: 152 KRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 211 +++ + F V+ G +PS DE ++ ++ TGM GAR QPL Sbjct: 178 EKLTREDGSVFAPVVGNPGD---GDSPSCAIIDEYHEHPTDILYSTMTTGM--GARSQPL 232 Query: 212 MVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDPWNEEC-WP 268 + TTAG D E K E+++ ++ P+ F I+ D W + C Sbjct: 233 TLIITTAGKDIESPCYDKDNEVKQCLDKMLPNERLFGMIYEL-----DALDNWQDPCNLI 287 Query: 269 HANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTV 328 ANP LG + +E + ++ A+ P + LN W + + M W + + Sbjct: 288 KANPNLGVSVFYEDLVEKLHLAKTVPRMTNDIKTKHLNMWVSGKTAFFNMDHWAKAEDKN 347 Query: 329 FKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW----RHWIPESALA 384 K F G+ GLDLAA+ DL + +F + + + W+PE + Sbjct: 348 LK-----LSNFKGEESHLGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVH 402 Query: 385 KLD---RLNDGRFAK----EFVPGGWLKVTEGDVLDFD----VVYDDIEADSKRFTILGG 433 +D R+ K ++ G L T+G D+ V D E D R + Sbjct: 403 SIDPKIAKTAKRYQKWVNMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASI-- 460 Query: 434 DADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARF 493 D + + E+ + +I + DF +MS M + H GNP+ + Sbjct: 461 PIDPTGATALSHELADNGFEPINI---RQDFTNMSPPMKELEAALAGGRFHHDGNPILAW 517 Query: 494 CFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATNAFYTRGGDYD-SVYEERE 552 C S + +RP K D+ +ID +MA G D S+Y+ + Sbjct: 518 CISNVLGTFVPGSDDRVRPTKGDKQ---SKIDGATALLMAIGRAMLHGQDSSHSIYDNSD 574 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 132 bits (332), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 135/503 (26%), Positives = 229/503 (45%), Gaps = 35/503 (6%) Query: 38 HTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLA 97 H KG + L D+Q IV +FG + RR+ A+I+LARKN K++LLA Sbjct: 67 HNKGILAGQPIELTDFQLF-IVGNIFGWKRKENGL----RRFRKAYIQLARKNAKSQLLA 121 Query: 98 GIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDA 157 I Y EQS E+Y ++Q+++ ++ V+ +L + K D RI Sbjct: 122 LIASYECFLSPEQS-EVYIAGWGREQSSIVYNEVLAQVQACDLL--KGKYTDSYGRIRHK 178 Query: 158 KTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVAST 216 K+ S ++ +A K+ G NPS DE + ++D L +GM AR PL+V T Sbjct: 179 KSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMV--ARQNPLIVIIT 236 Query: 217 TAGNDTEGFAGLKHREMERVMEDPDNP-DFKHIFVYMRNTPMEEDPWNEECWPHANPALG 275 TAG + +++ + +V+ DP +P + + FV + ++D +E W ANP + Sbjct: 237 TAGFNLASPCYTEYQYVSKVI-DPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIVA 295 Query: 276 RFLS-WEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNK 333 + +R + A + P +F +N W + ++ + W C K Sbjct: 296 TYEEGMNFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRAC---AIKEQI 352 Query: 334 DLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRH-WIPESALAKLDRLNDG 392 DL + C+ G+DL+ R DL S+ + P DG +W H +IPE LA+ R D Sbjct: 353 DL----DVRDCYVGIDLSMRIDLTSVSGIVPMDDGRF-YVWSHSFIPEDTLAE-KRRTDK 406 Query: 393 RFAKEFVPGGWLKVTEGDVLDFDVVYDDIE--ADSKRFTILGGDADQWSSDPVIQEIEKR 450 +V GW+ VT G V+D+ + I+ A+ K + I D +++ E+E Sbjct: 407 VPYDLWVKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEAE 466 Query: 451 TYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLI 510 Y+ +I + F +S+ R E L+ + H NP+ + + ++ N++ Sbjct: 467 GYVMVEI---RQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVK-QDHNENIM 522 Query: 511 RPDKPDRDMAAKRIDAVPTAVMA 533 D+D + RID + + A Sbjct: 523 L----DKDKSTGRIDPIAALINA 541 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 123 bits (309), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 117/484 (24%), Positives = 226/484 (46%), Gaps = 36/484 (7%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKR 144 + RKNGKT ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L K Sbjct: 110 FMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKN 169 Query: 145 LKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGS 204 + + + I+ T S A+D+ G N DEI ++D + ++ Sbjct: 170 FRTL--RDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SR 225 Query: 205 GARVQPLMVASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEED 260 AR+QPL++ TTAG +G +++++ED + F Y+ + ++D Sbjct: 226 AARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDD 279 Query: 261 PWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMP 319 + W ANP LG ++ + M+++ +A+ P F + N + N+ + ++ P Sbjct: 280 INDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP 339 Query: 320 AWDECKGTVFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI 378 T+ K+N+ + + G+ C G DL+ D + C F +G V +L WI Sbjct: 340 -------TLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWI 392 Query: 379 PESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQW 438 P+ K++ N+ +E+ G L V + +D+ V + I ++ + + D+ Sbjct: 393 PKH---KVEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRA 449 Query: 439 SSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSAC 498 ++ + QE++ + E+ + +S ++ + E L + + NPL ++ + Sbjct: 450 NAFKLNQELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNV 506 Query: 499 EARV 502 + ++ Sbjct: 507 QLKL 510 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 123 bits (308), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 117/484 (24%), Positives = 226/484 (46%), Gaps = 36/484 (7%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKR 144 + RKNGKT ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L K Sbjct: 110 FMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKN 169 Query: 145 LKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGS 204 + + + I+ T S A+D+ G N DEI ++D + ++ Sbjct: 170 FRTL--RDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SR 225 Query: 205 GARVQPLMVASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEED 260 AR+QPL++ TTAG +G +++++ED + F Y+ + ++D Sbjct: 226 AARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDD 279 Query: 261 PWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMP 319 + W ANP LG ++ + M+++ +A+ P F + N + N+ + ++ P Sbjct: 280 INDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP 339 Query: 320 AWDECKGTVFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI 378 T+ K+N+ + + G+ C G DL+ D + C F +G V +L WI Sbjct: 340 -------TLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWI 392 Query: 379 PESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQW 438 P+ K++ N+ +E+ G L V + +D+ V + I ++ + + D+ Sbjct: 393 PKH---KVEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRA 449 Query: 439 SSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSAC 498 ++ + QE++ + E+ + +S ++ + E L + + NPL ++ + Sbjct: 450 NAFKLNQELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNV 506 Query: 499 EARV 502 + ++ Sbjct: 507 QLKL 510 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 123 bits (308), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 117/484 (24%), Positives = 226/484 (46%), Gaps = 36/484 (7%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKR 144 + RKNGKT ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L K Sbjct: 110 FMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKN 169 Query: 145 LKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGS 204 + + + I+ T S A+D+ G N DEI ++D + ++ Sbjct: 170 FRTL--RDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SR 225 Query: 205 GARVQPLMVASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEED 260 AR+QPL++ TTAG +G +++++ED + F Y+ + ++D Sbjct: 226 AARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDD 279 Query: 261 PWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMP 319 + W ANP LG ++ + M+++ +A+ P F + N + N+ + ++ P Sbjct: 280 INDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP 339 Query: 320 AWDECKGTVFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI 378 T+ K+N+ + + G+ C G DL+ D + C F +G V +L WI Sbjct: 340 -------TLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWI 392 Query: 379 PESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQW 438 P+ K++ N+ +E+ G L V + +D+ V + I ++ + + D+ Sbjct: 393 PKH---KVEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRA 449 Query: 439 SSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSAC 498 ++ + QE++ + E+ + +S ++ + E L + + NPL ++ + Sbjct: 450 NAFKLNQELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNV 506 Query: 499 EARV 502 + ++ Sbjct: 507 QLKL 510 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 122 bits (305), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/484 (23%), Positives = 225/484 (46%), Gaps = 36/484 (7%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKR 144 + RKNGKT ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L + Sbjct: 110 FMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLREN 169 Query: 145 LKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGS 204 + + + I+ T S A+D+ G N DEI ++D + ++ Sbjct: 170 FRPL--RDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SR 225 Query: 205 GARVQPLMVASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEED 260 AR+QPL++ TTAG +G +++++ED + F Y+ + ++D Sbjct: 226 AARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIED------ERTFYYLASLDDDDD 279 Query: 261 PWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMP 319 + W ANP LG + + M+++ +A+ P F + N + N+ + ++ P Sbjct: 280 INDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYP 339 Query: 320 AWDECKGTVFKSNKDL-FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI 378 T+ K+N+ + D G+ C G DL+ D + C F +G V +L WI Sbjct: 340 -------TLQKNNEIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWI 392 Query: 379 PESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQW 438 P+ K++ N+ +E+ G L + + +D+ V + I ++ + + D+ Sbjct: 393 PKH---KVEYSNEKIPYREWEEDGLLTIQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRA 449 Query: 439 SSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSAC 498 ++ + QE++ + E+ + +S ++ + E L + + NPL ++ + Sbjct: 450 NAFKLNQELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNV 506 Query: 499 EARV 502 + ++ Sbjct: 507 QLKL 510 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 121 bits (304), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/485 (23%), Positives = 221/485 (45%), Gaps = 38/485 (7%) Query: 25 ANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWI 84 A++ F E+ +KG ++++ +L+ WQ I+ LFG V + RR++ A I Sbjct: 57 AHRPIRFIEKFCKPSKG--SKRQLVLQPWQHF-IIGSLFGWVHKETKL----RRFKEALI 109 Query: 85 ELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKR 144 + RKNGKT ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L + Sbjct: 110 FMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLREN 169 Query: 145 LKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGS 204 + + + I+ T S A+D+ G N DEI ++D + ++ Sbjct: 170 FRPL--RDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SR 225 Query: 205 GARVQPLMVASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEED 260 AR+QPL++ TTAG +G ++R++ED + F Y+ + ++D Sbjct: 226 AARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIED------ERTFYYLASLDDDDD 279 Query: 261 PWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMP 319 + W ANP LG + + M+++ +A+ P F + N + N+ + ++ P Sbjct: 280 INDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYP 339 Query: 320 AWDECKGTVFKSNKDL--FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHW 377 + N D+ D G+ C G DL+ D + C F +G V +L W Sbjct: 340 T--------LQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 391 Query: 378 IPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQ 437 IP+ K++ N+ E+ G L + + +D+ V + I ++ + + D+ Sbjct: 392 IPKH---KVEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDR 448 Query: 438 WSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSA 497 ++ + QE++ + E+ + +S ++ + E L + + NPL ++ + Sbjct: 449 ANAFKLNQELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINN 505 Query: 498 CEARV 502 + ++ Sbjct: 506 VQLKL 510 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 121 bits (303), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 118/467 (25%), Positives = 212/467 (45%), Gaps = 34/467 (7%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY-LLVADGEQSGEIYGVARDKKQAALAFDVAAQMV 135 RR+ +I+LARKN K++ LA + + + D +Q I G RD Q++ ++ + Sbjct: 100 RRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRD--QSSEVYEAVKTGI 157 Query: 136 KFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGM 194 S +L + K I+ K S ++ +A K+ G NPS DE A + + Sbjct: 158 SSSELLEGKWKEAYSTIEIF--KNGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEI 215 Query: 195 WDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRN 254 +D L +GM AR +PLM TTAG D ++ + +++ N + FV + Sbjct: 216 YDVLSSGMV--ARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 255 TPMEEDPWNEECWPHANPALGRFL-SWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 +D +E W ANP + + E +R A + P AF +N W + Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 314 R-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDL 372 +M M W +C+ D FD F+G + W G DL+ DL S+ ++ +G + Sbjct: 334 NGYMDMSKWQKCE-------VDTFD-FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIV 385 Query: 373 LWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILG 432 ++PE+ L + ++ R+ + G+L +T G+++D+ +V IE SK I Sbjct: 386 GQHSFMPEARLKEKMAIDKVRY-DLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE 444 Query: 433 GDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLAR 492 D D+W++ + Q +E + ++ +I A++S E K ++H+G+P+ Sbjct: 445 FDYDKWNALHLAQNLENKGFVCVEI---PQRIANLSIPTKNFREKVYEKKVKHNGDPVLF 501 Query: 493 FCFSACEARVAAYDPNLIRPDKPDRDMAAKRI--DAVPTAVMATNAF 537 + A + +++ D + M +K+I + + A NAF Sbjct: 502 W----------ALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAF 538 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 120 bits (302), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 118/467 (25%), Positives = 212/467 (45%), Gaps = 34/467 (7%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY-LLVADGEQSGEIYGVARDKKQAALAFDVAAQMV 135 RR+ +I+LARKN K++ LA + + + D +Q I G RD Q++ ++ + Sbjct: 100 RRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRD--QSSEVYEAVKTGI 157 Query: 136 KFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGM 194 S +L + K I+ K S ++ +A K+ G NPS DE A + + Sbjct: 158 SSSELLEGKWKEAYSTIEIF--KNGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEI 215 Query: 195 WDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRN 254 +D L +GM AR +PLM TTAG D ++ + +++ N + FV + Sbjct: 216 YDVLSSGMV--ARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 255 TPMEEDPWNEECWPHANPALGRFL-SWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 +D +E W ANP + + E +R A + P AF +N W + Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 314 R-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDL 372 +M M W +C+ D FD F+G + W G DL+ DL S+ ++ +G + Sbjct: 334 NGYMDMSKWQKCE-------VDTFD-FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIV 385 Query: 373 LWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILG 432 ++PE+ L + ++ R+ + G+L +T G+++D+ +V IE SK I Sbjct: 386 GQHSFMPEARLKEKMAIDKVRY-DLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE 444 Query: 433 GDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLAR 492 D D+W++ + Q +E + ++ +I A++S E K ++H+G+P+ Sbjct: 445 FDYDKWNALHLAQNLENKGFVCVEI---PQRIANLSIPTKNFREKVYEKKVKHNGDPVLF 501 Query: 493 FCFSACEARVAAYDPNLIRPDKPDRDMAAKRI--DAVPTAVMATNAF 537 + A + +++ D + M +K+I + + A NAF Sbjct: 502 W----------ALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAF 538 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 119 bits (297), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 117/467 (25%), Positives = 211/467 (45%), Gaps = 34/467 (7%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY-LLVADGEQSGEIYGVARDKKQAALAFDVAAQMV 135 RR+ +I+LARKN K++ LA + + + D +Q I G RD Q++ ++ + Sbjct: 100 RRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRD--QSSEVYEAVKTGI 157 Query: 136 KFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGM 194 S +L + K I+ K S ++ +A K+ G NPS DE A + + Sbjct: 158 SSSELLEGKWKEAYSTIEIF--KNGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEI 215 Query: 195 WDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRN 254 +D L +GM AR +PLM TTAG D ++ + +++ N + FV + Sbjct: 216 YDVLSSGMV--ARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 255 TPMEEDPWNEECWPHANPALGRFL-SWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 +D +E W ANP + + E +R A + P AF +N W + Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 314 R-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDL 372 +M M W +C+ D D F+G + W G DL+ DL S+ ++ +G + Sbjct: 334 NGYMDMSKWQKCE-------VDTLD-FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIV 385 Query: 373 LWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILG 432 ++PE+ L + ++ R+ + G+L +T G+++D+ +V IE SK I Sbjct: 386 GQHSFMPEARLKEKMAIDKVRY-DLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE 444 Query: 433 GDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLAR 492 D D+W++ + Q +E + ++ +I A++S E K ++H+G+P+ Sbjct: 445 FDYDKWNALHLAQNLENKGFVCVEI---PQRIANLSIPTKNFREKVYEKKVKHNGDPVLF 501 Query: 493 FCFSACEARVAAYDPNLIRPDKPDRDMAAKRI--DAVPTAVMATNAF 537 + A + +++ D + M +K+I + + A NAF Sbjct: 502 W----------ALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAF 538 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 118 bits (296), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 22/319 (6%) Query: 8 LDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVE 67 +D + + A VP A + E + G + + F L WQR+ ++ V Sbjct: 7 IDPVIARHIPADATVPSEGYRVAKWIEEFCYLTGSFAGQPFRLLPWQRELLID---AYVL 63 Query: 68 YSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVAD-GEQSGEIYGVARDKKQAAL 126 D FG ++R++ + +ARKNGK+ + A IMLY L+AD G+ +I A D+ QA + Sbjct: 64 TQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQIIAAANDRNQARM 123 Query: 127 AFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEI 186 FD A QMV SP L+ V D ++ + K N+ Y V++ADA G NP+ DE Sbjct: 124 VFDSAKQMVNASPKLA---AVCDVQRDVIRYKDNT-YRVVSADAGRQQGLNPAAVSLDEY 179 Query: 187 LAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEG-FAGLKHREMERVMEDPDNPDF 245 + ++D+L +GS AR QP+ + +TAG D +G FA L + + D+P Sbjct: 180 AFSKHSDLFDALT--LGSAARNQPMFLIISTAGPDPDGPFAALCEQGERVNSGEADDPT- 236 Query: 246 KHIFVYMRNTPMEE--DPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 +F + E D + + W NP S++ + +A E +FR + Sbjct: 237 --LFYRSWGPKLGETVDHLDPDVWRACNP------SYDILNPDDFKAAAQRSTEASFRIY 288 Query: 304 KLNQWQNSTIRWMRMPAWD 322 +L+Q+ W+ WD Sbjct: 289 RLSQFVRGASTWLPHGLWD 307 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 118 bits (295), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/467 (25%), Positives = 211/467 (45%), Gaps = 34/467 (7%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY-LLVADGEQSGEIYGVARDKKQAALAFDVAAQMV 135 RR+ +I+LARKN K++ LA + + + D +Q I G RD Q++ ++ + Sbjct: 100 RRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRD--QSSEVYEAVKTGI 157 Query: 136 KFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGM 194 S +L + K I+ K S ++ +A K+ G NPS DE A + + Sbjct: 158 SSSELLEGKWKEAYSTIEIF--KNGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEI 215 Query: 195 WDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRN 254 +D L +GM AR +PLM TTAG D ++ + +++ N + FV + Sbjct: 216 YDVLSSGMV--ARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 255 TPMEEDPWNEECWPHANPALGRFL-SWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 +D +E W ANP + + E +R A + P AF +N W + Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 314 R-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDL 372 +M M W +C+ D D F+G + W G DL+ DL S+ ++ +G + Sbjct: 334 NGYMDMSKWQKCE-------VDTXD-FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIV 385 Query: 373 LWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILG 432 ++PE+ L + ++ R+ + G+L +T G+++D+ +V IE SK I Sbjct: 386 GQHSFMPEARLKEKMAIDKVRY-DLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE 444 Query: 433 GDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLAR 492 D D+W++ + Q +E + ++ +I A++S E K ++H+G+P+ Sbjct: 445 FDYDKWNALHLAQNLENKGFVCVEI---PQRIANLSIPTKNFREKVYEKKVKHNGDPVLF 501 Query: 493 FCFSACEARVAAYDPNLIRPDKPDRDMAAKRI--DAVPTAVMATNAF 537 + A + +++ D + M +K+I + + A NAF Sbjct: 502 W----------ALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAF 538 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 112 bits (281), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 148/319 (46%), Gaps = 22/319 (6%) Query: 8 LDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVE 67 +D + + A P A + E + G + + F L WQR ++ Sbjct: 10 IDPVIARHIPADAPFPSEGYRVAKWIEEFCYLTGSFAGQPFRLLPWQRTLLID---AYEL 66 Query: 68 YSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVAD-GEQSGEIYGVARDKKQAAL 126 D FG ++R++ + +ARKNGK+ + A IMLY L+AD G+ ++ A D+ QA + Sbjct: 67 TQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQVIAAANDRNQARM 126 Query: 127 AFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEI 186 FD A QMV SP L+ V + ++ + K N+ Y V++ADA G NP+ DE Sbjct: 127 VFDSAKQMVNASPKLA---AVCNVQRDVIRYKDNT-YRVVSADAGRQQGLNPAAVSLDEY 182 Query: 187 LAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEG-FAGLKHREMERVMEDPDNPDF 245 + ++D+L +GS AR QP+ + +TAG D +G FA L + + D+P Sbjct: 183 AFSKSSDLFDALT--LGSAARNQPMFLIISTAGPDPDGPFAALCEQGERVNSGEADDP-- 238 Query: 246 KHIFVYMRNTPMEE--DPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 +F + E D + E W NP S++ + +A E +FR + Sbjct: 239 -TLFYRSWGPKLGETVDHLDPEVWARCNP------SYDILNPDDFKAAAQRSTEASFRIY 291 Query: 304 KLNQWQNSTIRWMRMPAWD 322 +L+Q+ W+ WD Sbjct: 292 RLSQFVRGASTWLPHGLWD 310 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 111 bits (278), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 118/522 (22%), Positives = 225/522 (43%), Gaps = 40/522 (7%) Query: 20 FCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRY 79 F V RAN+ F + + H KG + LE W+ + ++G + +E G R Sbjct: 46 FDVDRANEMLDFVQSFIRHVKGPLAGQLMELELWEMF-VFANMYGWY-HKNEKGKTVRVI 103 Query: 80 EIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSP 139 +++++ +KNGKT + AG +LY + + E + Y A D +QA A + AQ ++ S Sbjct: 104 RESYVQVPKKNGKTIIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSE 163 Query: 140 ILSKRLKVVD----------YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAW 189 L++ ++ Y+ I + + V+ + K G NP DE+ A Sbjct: 164 PLARHTQIYKGVNGTVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHAQ 223 Query: 190 QDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIF 249 ++ M+D+L++ S R QP+M+ +TAG ++ + V+E+ D+ +F Sbjct: 224 ENMDMYDNLKSAQIS--REQPMMLNISTAGKGASSVGMRVYKYAKLVLENDDDDS---LF 278 Query: 250 VYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQ 309 V + D + + W NP +G ++ E + + +A+ + ++ F LN + Sbjct: 279 VAIWEPNKNYDWEDRKVWKMVNPNIGVSVTMEQLEIEFKKAKQSAHSKAEFLSKHLNVFV 338 Query: 310 NSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGS 369 N + D+ + + K DL G+ C+ GLDL+ DL + FP D Sbjct: 339 NGADNYFE---HDQVQHVLVKDLGDL----TGEICYLGLDLSKTTDLTCVSLNFPSHDDE 391 Query: 370 ----VDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADS 425 + + +++P + ++ ++ + + V G+ +G ++D D + + I Sbjct: 392 GRSIIKVKQMYFLPNENIDFKEKEDNVPYT-DMVERGFATFCDGKMIDQDQIMEYIVECM 450 Query: 426 KRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF-AHMSDSMHRIFEWTLAKNLR 484 + + + D S +I+++E + Y N A + DS I+E L + Sbjct: 451 DLYDVQQINYDPAMSQKLIEKLENLGLECIAVNQYPNVMNAMLDDSEILIYEKRLITD-- 508 Query: 485 HHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDA 526 NPL F + A V N+ P + + K+ID Sbjct: 509 ---NPL--FVYCALNVVVVT---NINGMKAPSKRQSKKKIDG 542 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 105 bits (263), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 99/424 (23%), Positives = 189/424 (44%), Gaps = 31/424 (7%) Query: 86 LARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRL 145 + RKNGKT ++G+ Y + DGE EI+ +A KQA + FD + M+K SP L + Sbjct: 1 MGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENF 60 Query: 146 KVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSG 205 + + + I+ T S A+D+ G N DEI ++D + ++ Sbjct: 61 RPL--RDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN--SRA 116 Query: 206 ARVQPLMVASTTAGNDTEG----FAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDP 261 AR+QPL++ TTAG +G ++R++ED + F Y+ + ++D Sbjct: 117 ARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIED------ERTFYYLASLDDDDDI 170 Query: 262 WNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNS-TIRWMRMPA 320 + W ANP LG + M+++ +A+ P F + N + N+ + ++ P Sbjct: 171 NDSSNWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPT 230 Query: 321 WDECKGTVFKSNKDL--FDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWI 378 + N D+ D G+ C G DL+ D + C F +G V +L WI Sbjct: 231 --------LQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWI 282 Query: 379 PESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGGDADQW 438 P+ K++ N+ E+ G L + + +D+ V + I ++ + + D+ Sbjct: 283 PKH---KVEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDRA 339 Query: 439 SSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSAC 498 ++ + QE++ + E+ + +S ++ + E L + + NPL ++ + Sbjct: 340 NAFKLNQELKNYGFETEET---RQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNV 396 Query: 499 EARV 502 + ++ Sbjct: 397 QLKL 400 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 105 bits (261), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 136/552 (24%), Positives = 248/552 (44%), Gaps = 49/552 (8%) Query: 4 CGYTLDDIECTEVGAH---FCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 C +DD+E +++ + F + +A ++ FFE+ L T G+ ++ L +Q D IV Sbjct: 27 CQRHIDDLERSKLAPYKYEFDLEKALESIDFFED-LRFTDGEIAGQQVKLFGFQ-DFIVG 84 Query: 61 PLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARD 120 +FG V G RR++ ++++LARKN K+ L +GI + L D + ++Y A Sbjct: 85 SIFGWVCK----GTGYRRFKKSYVQLARKNAKSLLNSGIGIKLAAFDKYPNAQVYCTATK 140 Query: 121 KKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSG 180 KQA + + A + ++ P L + K+ D+ I + D + G +P G Sbjct: 141 MKQARIVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIMALGRDTGTIDGFDPHG 200 Query: 181 CGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDP 240 DE + + M L GS + + L+ TTAG + G + + V+E Sbjct: 201 GIIDEYHSHKTNQMVKLLED--GSVNQAESLISIITTAGFNLNGPCYKEWEYCKNVLEGI 258 Query: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRF-LSWEAMRKQAAEARNNPIAEMA 299 N D F+Y+ +E+D W+ W ANP + + E +++ A E++ ++ Sbjct: 259 VNND--EYFIYIAQMDVEDDIWDPNNWLKANPLVAKLPKGLENLKRFAEESKQKGGDDLK 316 Query: 300 -FRQFKLNQW-QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLC 357 F LN W + S +++ W ++K + F G++C+ GLDL++ DL Sbjct: 317 NFLTKSLNIWYEFSNDQYIGPSVWK------VGASKLTLENFKGKTCYAGLDLSSGGDLT 370 Query: 358 SICYLFP-----QSDGSVDLLWRH---WIPESALAKLDRLNDGRFAKEFVPGGWLKVTE- 408 S+ +FP ++ V + H +IP+ +A+ + +D + ++ G L VTE Sbjct: 371 SLALIFPYEFEKENGEKVRKYFIHSHSFIPKRRVAEHIQSDDVPY-DVWIENGLLTVTET 429 Query: 409 --GDVLDFDVVY----DDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKN 462 G D+ + D IE + LG D ++D +Q++E+ + +IF Sbjct: 430 LGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPH--NADTFLQDLEELGFDCVEIF---Q 484 Query: 463 DFAHMSDSMHRIFEWTLAKNLRHH-GNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAA 521 ++D A N+ ++ N L +S A++ + I K D+++ Sbjct: 485 SCKWLNDPTEDFKLECEAGNIEYNEENEL--LSWSVVNAKLVSNSNGEI---KIDKNLQE 539 Query: 522 KRIDAVPTAVMA 533 KRID V + A Sbjct: 540 KRIDPVDAVIDA 551 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 164/358 (45%), Gaps = 41/358 (11%) Query: 72 FGCYK-----RRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAAL 126 +G YK RR+ A+I+LARKN K++ LA I Y + E+ ++ ++Q+ Sbjct: 80 YGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKH-RVFIAGWSREQSDE 138 Query: 127 AFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADE 185 + + + +PIL + K R+ KTNS ++ +A K G NPS DE Sbjct: 139 VYQAILEQLHHAPIL--KGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDE 196 Query: 186 ILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVME---DPDN 242 A + ++D L +GM AR PLM TTAG + E +++ ++++ D +N Sbjct: 197 YHAHETSEIYDVLDSGMV--ARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTEN 254 Query: 243 PDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFL-SWEAMRKQAAEARNNPIAEMAFR 301 D+ FV + E+D +E W ANP + + E++R A P +F Sbjct: 255 DDY---FVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFL 311 Query: 302 QFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 +N+W + +M+M W C G + DL G + GLDL+ DL S+ Sbjct: 312 TKNMNRWVDQKDNGYMKMTKWRACSGEI----PDL----QGLPVYLGLDLSMTTDLTSVG 363 Query: 361 YLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVP------GGWLKVTEGDVL 412 Y+ Q DG + ++P++ R N+ + A + VP G++ T G+ L Sbjct: 364 YVAVQ-DGFFYVGQHSFMPDA------RANE-KMATDKVPYDLWREMGFITYTSGEEL 413 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 123/553 (22%), Positives = 227/553 (41%), Gaps = 56/553 (10%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 Query: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 Query: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 Query: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 Query: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 Query: 409 GD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF 464 D ++D+ V D I + + D W++ I IE + + F Sbjct: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIEVGQSF 476 Query: 465 AHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPDRDMA 520 +S S+ W + ++H+ N L + + LIR K ++ M Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKINKKMN 527 Query: 521 AKRIDAVPTAVMA 533 ++ID + + + A Sbjct: 528 RQKIDPIISIITA 540 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 123/553 (22%), Positives = 227/553 (41%), Gaps = 56/553 (10%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 Query: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 Query: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 Query: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 Query: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 Query: 409 GD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF 464 D ++D+ V D I + + D W++ I IE + + F Sbjct: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIELGQSF 476 Query: 465 AHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPDRDMA 520 +S S+ W + ++H+ N L + + LIR K ++ M Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKINKKMN 527 Query: 521 AKRIDAVPTAVMA 533 ++ID + + + A Sbjct: 528 RQKIDPIISIITA 540 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 123/553 (22%), Positives = 227/553 (41%), Gaps = 56/553 (10%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 Query: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 Query: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 Query: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 Query: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 Query: 409 GD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF 464 D ++D+ V D I + + D W++ I IE + + F Sbjct: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIEVGQSF 476 Query: 465 AHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPDRDMA 520 +S S+ W + ++H+ N L + + LIR K ++ M Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKINKKMN 527 Query: 521 AKRIDAVPTAVMA 533 ++ID + + + A Sbjct: 528 RQKIDPIISIITA 540 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 123/553 (22%), Positives = 227/553 (41%), Gaps = 56/553 (10%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 Query: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 Query: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 Query: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 Query: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 Query: 409 GD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF 464 D ++D+ V D I + + D W++ I IE + + F Sbjct: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIEVGQSF 476 Query: 465 AHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPDRDMA 520 +S S+ W + ++H+ N L + + LIR K ++ M Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKINKKMN 527 Query: 521 AKRIDAVPTAVMA 533 ++ID + + + A Sbjct: 528 RQKIDPIISIITA 540 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 123/553 (22%), Positives = 227/553 (41%), Gaps = 56/553 (10%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 Query: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 Query: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 Query: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 Query: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 Query: 409 GD--VLDFDVVYDDIEA--DSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDF 464 D ++D+ V D I + + D W++ I IE + + F Sbjct: 418 SDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIELGQSF 476 Query: 465 AHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPDRDMA 520 +S S+ W + ++H+ N L + + LIR K ++ M Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKINKKMN 527 Query: 521 AKRIDAVPTAVMA 533 ++ID + + + A Sbjct: 528 RQKIDPIISIITA 540 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 80.1 bits (196), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 123/557 (22%), Positives = 226/557 (40%), Gaps = 64/557 (11%) Query: 1 MEVCGYTLDDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVR 60 ++VC L +E G H+ +NKA F E +L K T + L ++Q+ IV Sbjct: 24 IQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVE-MLPDPK---TNQPMPLMEFQKF-IVG 78 Query: 61 PLFG--RVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG--EQSGEIYG 116 L+G R +Y R + A+I +ARK GK+ +++G+ + L+ + + +IY Sbjct: 79 SLYGWRRGQY--------RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV 130 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSK--RLKVVDYKKRIYDAKTNSFYDVIAADAKSAL 174 + KQA F +A+Q V SK R K K I D ++S + ++ + + Sbjct: 131 ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD 190 Query: 175 GSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREME 234 G +P+ DE+ + D M+ +TGM + PL + +TAG++ +++ ++ Sbjct: 191 GKDPTVAILDELASMPDDEMYSRFKTGM--TLQKNPLTLLVSTAGDNLNSQMYQEYKYIK 248 Query: 235 RVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAA 288 R++ + D + FVY +E+ +E W A P L L Q Sbjct: 249 RILNEEVRAD--NYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDE 306 Query: 289 EARNNPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGL 348 + ++ + F L Q Q + + W++ + N G+ + G+ Sbjct: 307 LEKGTSYHKILIKNFNLWQAQRED-SLLDISDWEQVITPMPNIN--------GKDVYIGV 357 Query: 349 DLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTE 408 DL+ DL S+ ++FP D V L +I + D + + G + T+ Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQ 417 Query: 409 GD--------VLDFDVVYDDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAY 460 D V+DF V + + + D W++ I IE + + Sbjct: 418 SDSGMIDSKQVIDFIVKF----ITTHDLNVQAVCYDPWNAQSFITTIESMALDWP-LIEV 472 Query: 461 KNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPD----KPD 516 F +S S+ W + ++H+ N L + + LIR K + Sbjct: 473 GQSFKALSQSIKEFRMWVADERIQHNDNML---------LTTSVNNAVLIRDGEDNVKIN 523 Query: 517 RDMAAKRIDAVPTAVMA 533 + M ++ID + + + A Sbjct: 524 KKMNRQKIDPIISIITA 540 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 70.1 bits (170), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 115/483 (23%), Positives = 207/483 (42%), Gaps = 63/483 (13%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAFDVAAQM 134 RR+ A I +ARKNGKT L+AGI+LY L + S +++ A D+ QA +A+D+A + Sbjct: 108 RRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKK- 166 Query: 135 VKFSPILSKRLKVVDYKKRIYDAKTN----SFYDVIAADAKSALGSNPSGCGADEILAWQ 190 + S + +K + V K + D N S+ ++ D + G P DE A + Sbjct: 167 -QLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASK 225 Query: 191 DGGMWDSLRTGMGSGARVQPLMVASTTAGNDTE-GFAGLKHREMERVMEDPDNPDFKHIF 249 M + L +G G P ++ +TAG D +++ + +++ D + D + F Sbjct: 226 TNEMLELLESGQGQLD--NPFILIISTAGMDLNVPMHTIEYPYITKIL-DGEITD-EGYF 281 Query: 250 VYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 Y+ EE+ +E W +NP L + + + R++ + I ++ + F Sbjct: 282 GYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVS-LETGEINKVLIKNF 340 Query: 304 KLNQW-QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYL 362 N W Q+S ++ +W+ + D D + + W G+D+ DL +I Sbjct: 341 --NMWRQSSEESYIDKQSWELAQ-------IDKPDTYK-RRVWLGVDVGRVSDLFAIS-- 388 Query: 363 FPQSDGSVDLLWRHWIPES---------ALAKLDRLNDGRFAKEFVPGGWLKVT--EGDV 411 SV ++ +W +S AK R DG G+ ++T E V Sbjct: 389 ------SVIMMDDYWYLDSFSFVATKYGLTAKEKR--DGVSYSNLERQGYCEITTLESGV 440 Query: 412 LDFDVVYDDIE--ADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSD 469 +D + V + IE + + + G D + ++ IEKR + I + + + Sbjct: 441 IDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQT--TMVLN 498 Query: 470 SMHRIFEWTLAK-NLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVP 528 + F L K ++H GNPL + + D N +R DK + + +ID + Sbjct: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT---DNNGMRIDK---NKNSNKIDPLD 552 Query: 529 TAV 531 A+ Sbjct: 553 AAL 555 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 65.9 bits (159), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/324 (24%), Positives = 133/324 (41%), Gaps = 42/324 (12%) Query: 78 RYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALA-FDVAAQMVK 136 R++ +I +AR NGKT++LA LY ++G + +Q A++ D+A Sbjct: 107 RFKTIFISMARTNGKTQVLATYALYNF---------LFGSPKINRQLAVSSIDIAHTHNL 157 Query: 137 FSPILSKRLKVVD--YKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGM 194 F+ + +++ D +KK N V+ +SA+ S G+ G+ Sbjct: 158 FNYMRFNWIQLKDGVFKKLAKALDINDNSQVMEIKKQSAVMKKLSAQGSPADSDHYTTGI 217 Query: 195 WDSLR----------TGMGSGARVQPL--MVASTTAGNDTEGFAGLKHREMERVMEDPDN 242 D + M SG PL M +TAG D ++ +++E D Sbjct: 218 VDEYHLFGQKQRDFISSMTSGMVNNPLAQMFFISTAGVDPTVPMFEDYKRYSKMLESGDW 277 Query: 243 PDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEA----RNNPIAEM 298 + V + E++ + E WP +NP + E+MRK E R++ ++ Sbjct: 278 SSSEKDLVLIWEQDSEDEAYLIETWPKSNP----LMEIESMRKNLTEGMITERDSLNSQG 333 Query: 299 AFRQF---KLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRD 355 R F +N WQN+ + +P D + + D FD F G+ + G D + D Sbjct: 334 RIRDFYVKNMNLWQNAK-KNAYLP-LDLVQDAIV----DEFDYF-GRDVFIGFDYSQTND 386 Query: 356 LCSICYLFPQSDGSVDLLWRHWIP 379 S+ ++FP S L WIP Sbjct: 387 DTSLAFVFPHSGSKFHLYQHSWIP 410 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/369 (23%), Positives = 151/369 (40%), Gaps = 44/369 (11%) Query: 21 CVPRANKAQAFFEEILVHTKGQYTRKKFI-LEDWQRDDIVRPLFGRVEYSDEFGCYKRRY 79 VPR +K + FF+E + + K F LE++Q+ I+ +F R YS+ + Y Sbjct: 34 IVPRIDKKEIFFDEKNIKNCINFIEKWFFKLENFQKF-IISFVFLR--YSE---TNRNVY 87 Query: 80 EIAWIELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFS 138 + I + R GK L++GI+ YLL G ++ + VA + QA +FD V+ + Sbjct: 88 KKILIMMGRGGGKNGLISGIIAYLLSPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESN 147 Query: 139 PILSKRLKVVDY--KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWD 196 P +LK + Y K I TNS ++ + G DEI ++ Sbjct: 148 P----KLKEIYYNTKSEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVR 203 Query: 197 SLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTP 256 ++G+G + + T G EGF + ++V+ N + +F ++ Sbjct: 204 VHKSGLGKVKNAREFYIG--TDGYVREGFIDSMKDKAKKVL--SGNARWNSMFPFICKID 259 Query: 257 MEEDPWNEECWPHANPALGRFLS------WEAMRKQAAEARNNPIAEMAFRQFKLNQWQN 310 E + ++E W ANP +S ++ + +Q E +P F Sbjct: 260 EEHEVDDKEKWQKANPMFHEPMSDYAQELFDMVCEQYEEMVEDPSNREEF---------- 309 Query: 311 STIRWMRMPAWDECKGT-----VFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQ 365 + M P D + + + ++L D G+ C GLD AA RD ++ LF Sbjct: 310 -MTKRMDFPVMDVERSVASHEELVATKRELPD-MRGEVCIGGLDYAAIRDFAAVGLLFK- 366 Query: 366 SDGSVDLLW 374 D +W Sbjct: 367 --NGADYVW 373 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 110/465 (23%), Positives = 190/465 (40%), Gaps = 55/465 (11%) Query: 9 DDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEY 68 +D++ T+ H+ A KA F E IL K + K L +Q+ I+ ++G V+ Sbjct: 28 EDLKRTDWRWHYDPNLAGKAVKFME-ILPEPK---SGKPQPLAPFQKF-IIGSIYGWVDK 82 Query: 69 SDEFGCYKRRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAAL 126 D RR+ +I +ARKNGK+ L++G++LY L + ++Y A D+KQA + Sbjct: 83 DD---SNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGI 139 Query: 127 AF----DVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCG 182 F D +++ P + + +K+ + + + S + D G P Sbjct: 140 VFGMVKDRLRALMRKDPGIKRMVKIT--RDELVNLDDGSTIRSFSRDTGLVDGYEPHVAV 197 Query: 183 ADEILAWQDGGMWDSLRTGMGSGARVQP--LMVASTTAGNDTE-GFAGLKHREMERVMED 239 DE + M ++L SG + P L +TAG D + ++V+ Sbjct: 198 VDEYANAKTTDMIETL----ASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSG 253 Query: 240 PDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEM- 298 + + F+ ++ E D N W +NP L + + Q ++ +A+ Sbjct: 254 EEKAERYFAFIAEQDNVQEVDDPN--SWIKSNP----LLDVDTLHSQISDYLTTKLAQAR 307 Query: 299 ------AFRQFKLNQWQNST-IRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLA 351 A N W+ +T ++ AW K D+ GQ W G+D+ Sbjct: 308 ADGSLNAKLVKNFNIWRQATEDSYLDFDAW---KAAELTDKPDI----RGQRAWIGIDVG 360 Query: 352 ARRDLCSICYLFPQS-----DGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKV 406 DL +I +L PQ DG + + I K DR++ A E G + Sbjct: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNK--IKTDRID--YLAAEQHGEGEISS 416 Query: 407 TEGDVLDFDVVYDDIEADSKR--FTILGGDADQWSSDPVIQEIEK 449 E ++D D VY+ +E +R + G D + P++ IEK Sbjct: 417 LESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 88/380 (23%), Positives = 154/380 (40%), Gaps = 47/380 (12%) Query: 21 CVPRANKAQAFFEEILVHTKGQYTRKKFI-LEDWQRDDIVRPLFGRVEYSDEFGCYKRRY 79 +PR K + FF+E + + K F LE++Q+ I+ +F R YS+ + Y Sbjct: 34 IIPRIEKKEIFFDEKNIKNCINFIEKWFFKLENFQKF-IISFVFLR--YSE---TNRNVY 87 Query: 80 EIAWIELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFS 138 + I + R GK L++GI+ YL+ G ++ + VA + QA +FD V+ + Sbjct: 88 KKILIMMGRGGGKNGLISGIIAYLISPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESN 147 Query: 139 PILSKRLKVVDY--KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWD 196 P +LK + Y K I TNS ++ + G DEI ++ Sbjct: 148 P----KLKEIYYNTKSEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVR 203 Query: 197 SLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTP 256 ++G+G + + T G EGF + ++V+ + +F ++ Sbjct: 204 VHKSGLGKVKNAREFYIG--TDGYVREGFIDSMKDKAKKVLSGA--ARWNSMFPFICKID 259 Query: 257 MEEDPWNEECWPHANPALGRFLS------WEAMRKQAAEARNNPIAEMAFRQFKLNQWQN 310 E + ++E W ANP + +S ++ + +Q E +P F Sbjct: 260 EEHEVDDKEKWQKANPMFHQPMSDYAQELFDMVCEQYEEMIEDPSNREEF---------- 309 Query: 311 STIRWMRMPAWDECKGT-----VFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQ 365 + M P D + + + ++L D G+ C GLD AA RD ++ LF Sbjct: 310 -MTKRMDFPVMDVERSVASHEELVATKRELPD-MRGEVCIGGLDYAAIRDFAAVGLLFKD 367 Query: 366 SDGSVDLLWRHWIPESALAK 385 D V W+ S + K Sbjct: 368 RDDYV------WLSHSFVRK 381 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 15/254 (5%) Query: 57 DIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYG 116 D+V LFG Y + G R + +I + +KN K+ L AGIM+ L+ + Q+ Sbjct: 63 DLVAALFG--SYDAQTGV--RHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGS 176 +A + AA AF+ A MV+ L +V + + I T++ V+AAD + G Sbjct: 119 LAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178 Query: 177 NPSGCGADEILAWQDGGMW---DSLRTGMGS-GARVQPLMVASTTAGNDTEGFAGLKHRE 232 G DE+ W G + D LR +G +R + +V +TT N+ + + Sbjct: 179 KSVGTLIDEL--WLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQ 236 Query: 233 MERVMEDPDNPDFKHIFVYMRNTP-MEEDPWN--EECWPHANPALGRFLSWEAMRKQAAE 289 R + D D + V + P M E + E NP LG + + ++ + Sbjct: 237 YARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYRK 296 Query: 290 ARNNPIAEMAFRQF 303 AR E AFR F Sbjct: 297 AREA--GEEAFRGF 308 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 97/408 (23%), Positives = 172/408 (42%), Gaps = 45/408 (11%) Query: 33 EEILVHTKGQ------YTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIEL 86 E+ VH +G+ + F+LE WQ+ I L ++ G RR++ A+I + Sbjct: 59 EKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLK-----GTKIRRFKEAFIFI 113 Query: 87 ARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLK 146 RKNGKT L+A + L + + + +IY + +Q+ +F+ + + R Sbjct: 114 PRKNGKTRLIAALAWALALLERQSGSKIYITSAALQQSLQSFEFI--------LFNLRQM 165 Query: 147 VVDYKKRIYDAKTNSFYDVIAADAK---SALGSNPS-----GCG---ADEILAWQDGGMW 195 + RI + + +D AL +NP C ADE+ A++ + Sbjct: 166 GEEQNFRILNNNQENSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQY 225 Query: 196 DSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYM--R 253 + ++ M A LM+ TTAG+D F + + ++++++ + +F+ Sbjct: 226 NIIKEAM--KAYTNKLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADE 283 Query: 254 NTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 + E D N ANP G + + + A +A+N+P F LN + + Sbjct: 284 DENGEVDYTNPIEHEKANPNYGVTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMK 343 Query: 314 RWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICYLFPQSDGSVDL 372 + + DE K + K + + WF G DL+ DL + L+ +G VD+ Sbjct: 344 AYFNI---DEFKKSDRKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAA-LYGNYNG-VDI 398 Query: 373 LWRH-WIP-ESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDF-DVV 417 H W P +A K + N F + GWL +T ++F DVV Sbjct: 399 AITHAWFPIVAATRKAEEDNIPLFG--WRDDGWLTMTNTPTVNFSDVV 444 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 97/408 (23%), Positives = 172/408 (42%), Gaps = 45/408 (11%) Query: 33 EEILVHTKGQ------YTRKKFILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAWIEL 86 E+ VH +G+ + F+LE WQ+ I L ++ G RR++ A+I + Sbjct: 59 EKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLK-----GTKIRRFKEAFIFI 113 Query: 87 ARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLK 146 RKNGKT L+A + L + + + +IY + +Q+ +F+ + + R Sbjct: 114 PRKNGKTRLIAALAWALALLERQSGSKIYITSAALQQSLQSFEFI--------LFNLRQM 165 Query: 147 VVDYKKRIYDAKTNSFYDVIAADAK---SALGSNPS-----GCG---ADEILAWQDGGMW 195 + RI + + +D AL +NP C ADE+ A++ + Sbjct: 166 GEEQNFRILNNNQENSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQY 225 Query: 196 DSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYM--R 253 + ++ M A LM+ TTAG+D F + + ++++++ + +F+ Sbjct: 226 NIIKEAM--KAYTNKLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADE 283 Query: 254 NTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 + E D N ANP G + + + A +A+N+P F LN + + Sbjct: 284 DENGEVDYTNPIEHEKANPNYGVTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMK 343 Query: 314 RWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICYLFPQSDGSVDL 372 + + DE K + K + + WF G DL+ DL + L+ +G VD+ Sbjct: 344 AYFNI---DEFKKSDRKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAA-LYGNYNG-VDI 398 Query: 373 LWRH-WIP-ESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDF-DVV 417 H W P +A K + N F + GWL +T ++F DVV Sbjct: 399 AITHAWFPIVAATRKAEEDNIPLFG--WRDDGWLTMTNTPTVNFSDVV 444 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 93/424 (21%), Positives = 167/424 (39%), Gaps = 49/424 (11%) Query: 30 AFFEEILVHTKGQYTRKK------FILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAW 83 E +VH +G+ K L+ WQ+ V LFG E G RR+ A Sbjct: 56 GLIEGTIVHVQGENKEGKSFKDTPMYLQPWQKFVCVN-LFGFFEK----GTNIRRFNEAL 110 Query: 84 IELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSK 143 I L RK GKT A + + D + Y VA KQ +F V+ K Sbjct: 111 IFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVK 170 Query: 144 RLKVVDYKKR--IYDAKTNSFYDVIA-ADAKSALGS-NPSGCGADEILAWQDGGMWDSLR 199 ++++ D + ++ + + D+ A A+ L S N + DEI +W+ G + Sbjct: 171 KMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYIL 230 Query: 200 TGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDP-DNPDFKHIFVYM------ 252 A L++ +TAG+ GF + +++V+ + + F+++ Sbjct: 231 MKNSQKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQD 290 Query: 253 ----------RNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQ 302 R +DP E P+L ++ + + +A +A P + F Sbjct: 291 EKGNIINPVTREITTIDDP---EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLN 347 Query: 303 FKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICY 361 LN + NS + + DE + + + + + + W+ G DL+ DL + Sbjct: 348 KSLNIFTNSMDAYFDI---DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASAL 404 Query: 362 L--FPQSDGSVDLLWRH-WIPES-ALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVV 417 + S+D++ H + P+S A+ K + F E+ GW ++ + V+ Sbjct: 405 YGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLF--EWQEEGWATLSNTET----VL 458 Query: 418 YDDI 421 YDDI Sbjct: 459 YDDI 462 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 46.6 bits (109), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 95/431 (22%), Positives = 166/431 (38%), Gaps = 31/431 (7%) Query: 84 IELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFD-VAAQMVKFSPIL 141 I + R GK L++ I +L G + I VA + QA +FD + ++ Sbjct: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNK 150 Query: 142 SKRLKVVDY---KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSL 198 + + Y K +I + T S ++ K+ G DEI + M + Sbjct: 151 TGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVK 210 Query: 199 RTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPME 258 R G+G + + +T G EG+ ++ V+ F + P E Sbjct: 211 RGGLGKKKNRRTFYI--STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRM 318 D + + W ANP L + LS A K ++ F + N+ + T R M + Sbjct: 269 VD--DRQTWEKANPMLHKPLSEYA--KTLLSTIEEEYNDLPFN--RSNKPEFMTKR-MNL 321 Query: 319 PAWDECK-----GTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLL 373 P D K + +N+++ + Q C GLD A RD S+ LF ++D + Sbjct: 322 PEVDLEKVIAPWKEILATNREIPN-LDNQMCIGGLDFANIRDFASVGLLFRKNDDYI--- 377 Query: 374 WRHWIPESALAK--LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTIL 431 W+ S + + LD + KE+ G L + + DV++ + + D +++ + Sbjct: 378 ---WLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLE 434 Query: 432 GGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLA 491 AD + +D V + E E +N A RI N+ + NPL Sbjct: 435 KVIADNYRTDIVRRAFEDAGIKLE---VLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLM 491 Query: 492 RFCFSACEARV 502 R+ + +V Sbjct: 492 RWFTNNVAVKV 502 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 46.6 bits (109), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 95/431 (22%), Positives = 166/431 (38%), Gaps = 31/431 (7%) Query: 84 IELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFD-VAAQMVKFSPIL 141 I + R GK L++ I +L G + I VA + QA +FD + ++ Sbjct: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNK 150 Query: 142 SKRLKVVDY---KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSL 198 + + Y K +I + T S ++ K+ G DEI + M + Sbjct: 151 TGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVK 210 Query: 199 RTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPME 258 R G+G + + +T G EG+ ++ V+ F + P E Sbjct: 211 RGGLGKKKNRRTFYI--STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRM 318 D + + W ANP L + LS A K ++ F + N+ + T R M + Sbjct: 269 VD--DRQTWEKANPMLHKPLSEYA--KTLLSTIEEEYNDLPFN--RSNKPEFMTKR-MNL 321 Query: 319 PAWDECK-----GTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLL 373 P D K + +N+++ + Q C GLD A RD S+ LF ++D + Sbjct: 322 PEVDLEKVIAPWKEILATNREIPN-LDNQMCIGGLDFANIRDFASVGLLFRKNDDYI--- 377 Query: 374 WRHWIPESALAK--LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTIL 431 W+ S + + LD + KE+ G L + + DV++ + + D +++ + Sbjct: 378 ---WLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLE 434 Query: 432 GGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLA 491 AD + +D V + E E +N A RI N+ + NPL Sbjct: 435 KVIADNYRTDIVRRAFEDAGIKLE---VLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLM 491 Query: 492 RFCFSACEARV 502 R+ + +V Sbjct: 492 RWFTNNVAVKV 502 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 46.6 bits (109), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 84/377 (22%), Positives = 149/377 (39%), Gaps = 28/377 (7%) Query: 84 IELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFD-VAAQMVKFSPIL 141 I + R GK L++ I +L G + I VA + QA +FD + ++ Sbjct: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNK 150 Query: 142 SKRLKVVDY---KKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSL 198 + + Y K +I + T S ++ K+ G DEI + M + Sbjct: 151 TGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVK 210 Query: 199 RTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPME 258 R G+G + + +T G EG+ ++ V+ F + P E Sbjct: 211 RGGLGKKKNRRTFYI--STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRM 318 D + + W ANP L + LS A K ++ F + N+ + T R M + Sbjct: 269 VD--DRQTWEKANPMLHKPLSEYA--KTLLSTIEEEYNDLPFN--RSNKPEFMTKR-MNL 321 Query: 319 PAWDECK-----GTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLL 373 P D K + +N+++ + Q C GLD A RD S+ LF ++D + Sbjct: 322 PEVDLEKVIAPWKEILATNREIPN-LDNQMCIGGLDFANIRDFASVGLLFRKNDDYI--- 377 Query: 374 WRHWIPESALAK--LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTIL 431 W+ S + + LD + KE+ G L + + DV++ + + D +++ + Sbjct: 378 ---WLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLE 434 Query: 432 GGDADQWSSDPVIQEIE 448 AD + +D V + E Sbjct: 435 KVIADNYRTDIVRRAFE 451 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 21/257 (8%) Query: 57 DIVRPLFGRVEYSDEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYG 116 D V +FG Y E G K+ ++ +++KN K+ + AGIML ++ + E Sbjct: 61 DFVAAIFG--AYDAETG--KQLIREFFLLISKKNTKSTIAAGIMLTAVILCWREEEEHLI 116 Query: 117 VARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGS 176 +A K+ A +F AA M++ LS+ V D+ + I + + V+AAD + G Sbjct: 117 LAPTKEVADNSFKPAAGMIRADAELSELFHVQDHIRTITHRVSRASLKVVAADTDTVSGK 176 Query: 177 NPSGCGADEILAWQDGGMWDS----LRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHRE 232 DE W G ++ + G +R + ++ TT ++ + + Sbjct: 177 KSGKILIDE--HWVFGKRANAEAMFMEATGGQVSRDEGWVIILTTQSDEPPAGVFKEKLQ 234 Query: 233 MERVMEDPDNPDFKHIFVY------MRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQ 286 R + D D K + V M + DP N + NP LGR +S E + Q Sbjct: 235 YYRDVRDGKIVDRKSLGVLYEFPEEMVKSKAYLDPAN---YYITNPNLGRSVSAEWLEDQ 291 Query: 287 AAEARNNPIAEMAFRQF 303 + R + +F+QF Sbjct: 292 LNKIRTK--TDGSFQQF 306 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 41.6 bits (96), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 74/324 (22%), Positives = 125/324 (38%), Gaps = 62/324 (19%) Query: 78 RYEIAWIELARKNGKTELLAGIML---YLLVADGEQSGEIYGVARDKKQAALAFDVAAQM 134 R+ + I +AR+ GKT LA I++ Y +V S ++ + D + A F+ + Sbjct: 126 RFTTSNISIARQQGKT-WLASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQ 184 Query: 135 VKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGM 194 K ILS D ++R +A+T VIA + K+ + S GG Sbjct: 185 AK--TILSLPEFADDARERGVEAQTTQ---VIAKNTKNTIRKGTS-----------QGGG 228 Query: 195 WDSLRTGMGSGARVQPLMVA-STTAGNDTEGFAGLKHREMERVM-------------EDP 240 +DS + + L A + T T G G+K+R ++ ED Sbjct: 229 FDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDV 288 Query: 241 DNPDFKH--------IFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAA--EA 290 +H +F + + E++ + E W +NP L + Q A + Sbjct: 289 TRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETWAKSNPNLLELPKSKRDNLQNALNQD 348 Query: 291 RNNPIAEMAFRQF---KLNQW----QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQS 343 RN+ E F LN W QNS + + D + ++ D FD G+ Sbjct: 349 RNDNEREGTLETFVNKSLNLWSRRFQNSYL------SLDNIQRSII----DRFDV-NGRD 397 Query: 344 CWFGLDLAARRDLCSICYLFPQSD 367 + G D + D S +++P +D Sbjct: 398 VFIGFDGSQTNDNTSFGFIYPYTD 421 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 95 LLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRI 154 + +G+ML +L+ +S VA + A +F AA V+ P LSK +++ + K + Sbjct: 106 IASGVMLTMLITGWRKSATYMIVAPTIEVAQASFKPAADSVRADPQLSKLIQISAHTKTL 165 Query: 155 YDAKTNSFYDVIAADAKSALGSNPSGCGADE 185 + + + ++AAD + GS S DE Sbjct: 166 TNRVSGAVLKIVAADENTVTGSKASVLLVDE 196 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 73/348 (20%), Positives = 124/348 (35%), Gaps = 52/348 (14%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFD 129 DE G ++ L R +GK+ L+A +L ++ G+ GE +A D QA FD Sbjct: 84 DEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFD 143 Query: 130 VAAQMVKFSPIL-----SKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGAD 184 + S L +K K K+ + A + + D A G N S D Sbjct: 144 QVRNQTEASDTLRVYNENKIFKST--KQGLEFASFKTTFKKQTNDTLRAQGGNSSLNIFD 201 Query: 185 EILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM-E 238 E+ + + + + G+R Q + + S D GL + +ER E Sbjct: 202 EVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFKSE 251 Query: 239 DPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEM 298 + D +YM E +++ W A P +G W + ++ A+ +P + Sbjct: 252 EEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQN 309 Query: 299 AFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCS 358 F F + T + P + K T F F + G+DL+ DL + Sbjct: 310 KFLAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTA 361 Query: 359 ICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 387 + ++ + Q D LW ++ L LD Sbjct: 362 VSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 72/346 (20%), Positives = 121/346 (34%), Gaps = 48/346 (13%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFD 129 DE G ++ L R +GK+ L+A +L ++ G+ GE +A D QA FD Sbjct: 84 DEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFD 143 Query: 130 VAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVI---AADAKSALGSNPSGCGADEI 186 + S L + +K + SF D A G N S DE+ Sbjct: 144 QVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEV 203 Query: 187 LAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM-EDP 240 + + + + G+R Q + + S D GL + +ER E+ Sbjct: 204 HTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFKSEEE 253 Query: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF 300 D +YM E +++ W A P +G W + ++ A+ +P + F Sbjct: 254 FYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQNKF 311 Query: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 F + T + P + K T F F + G+DL+ DL ++ Sbjct: 312 LAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTAVS 363 Query: 361 YL-------------------FPQSDGSVDLLWRHWIPESALAKLD 387 ++ + Q D LW ++ L LD Sbjct: 364 FVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 72/346 (20%), Positives = 121/346 (34%), Gaps = 48/346 (13%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFD 129 DE G ++ L R +GK+ L+A +L ++ G+ GE +A D QA FD Sbjct: 84 DEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFD 143 Query: 130 VAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVI---AADAKSALGSNPSGCGADEI 186 + S L + +K + SF D A G N S DE+ Sbjct: 144 QVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEV 203 Query: 187 LAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM-EDP 240 + + + + G+R Q + + S D GL + +ER E+ Sbjct: 204 HTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFKSEEE 253 Query: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF 300 D +YM E +++ W A P +G W + ++ A+ +P + F Sbjct: 254 FYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKF 311 Query: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 F + T + P + K T F F + G+DL+ DL ++ Sbjct: 312 LAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTAVS 363 Query: 361 YL-------------------FPQSDGSVDLLWRHWIPESALAKLD 387 ++ + Q D LW ++ L LD Sbjct: 364 FVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 73/350 (20%), Positives = 123/350 (35%), Gaps = 56/350 (16%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFD 129 DE G ++ L R +GK+ L+A +L ++ G+ GE +A D QA FD Sbjct: 84 DEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFD 143 Query: 130 VAAQMVKFSPILSKRLKVVDYKKRIYDAKT-------NSFYDVIAADAKSALGSNPSGCG 182 V+ S L+V + K K + + D A G N S Sbjct: 144 ----QVRNQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNI 199 Query: 183 ADEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM 237 DE+ + + + + G+R Q + + S D GL + +ER Sbjct: 200 FDEVHTY-----GEDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFK 249 Query: 238 -EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIA 296 E+ D +YM E +++ W A P +G W + ++ A+ +P Sbjct: 250 SEEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPAL 307 Query: 297 EMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDL 356 + F F + T + P + K T F F + G+DL+ DL Sbjct: 308 QNKFLAFNMGLPMQDTAYYF-TPQ--DTKLTEFN-----LSVFNKNRTYVGIDLSLIGDL 359 Query: 357 CSICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 387 ++ ++ + Q D LW ++ L LD Sbjct: 360 TAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 40.4 bits (93), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 72/346 (20%), Positives = 121/346 (34%), Gaps = 48/346 (13%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFD 129 DE G ++ L R +GK+ L+A +L ++ G+ GE +A D QA FD Sbjct: 84 DEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFD 143 Query: 130 VAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVI---AADAKSALGSNPSGCGADEI 186 + S L + +K + SF D A G N S DE+ Sbjct: 144 QVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEV 203 Query: 187 LAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM-EDP 240 + + + + G+R Q + + S D GL + +ER E+ Sbjct: 204 HTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFKSEEE 253 Query: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF 300 D +YM E +++ W A P +G W + ++ A+ +P + F Sbjct: 254 FYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKF 311 Query: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 F + T + P + K T F F + G+DL+ DL ++ Sbjct: 312 LAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTAVS 363 Query: 361 YL-------------------FPQSDGSVDLLWRHWIPESALAKLD 387 ++ + Q D LW ++ L LD Sbjct: 364 FVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%) Query: 95 LLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRI 154 + +G+ML L+ +S VA + A +F A+ V+ P LSK + + + + + Sbjct: 98 IASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTL 157 Query: 155 YDAKTNSFYDVIAADAKSALGSNPSGCGADE 185 + + + VIAAD S GS S DE Sbjct: 158 TNRVSGAVLKVIAADENSVTGSKASVLLVDE 188 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%) Query: 204 SGARVQPLMV-ASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPW 262 + AR P ++ AS+T D+ L R M +DPD ++M D Sbjct: 213 TSARANPFIIYASSTGLEDSTELEKLHDRGMR---QDPD-------MLFMEWCATTRDLD 262 Query: 263 NEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPA-- 320 +EE + +NPALG +S E +RK+ N ++ F + +L W ++ + +PA Sbjct: 263 DEENYYRSNPALGYRISIERIRKE-----RNRHSDKTFGRERLGLWNDNAFNAV-IPADQ 316 Query: 321 WDE---CKGTVFKSNKDLFDAFAGQS-----CWFGLDLAARRDLCSICYLFPQSDGSVDL 372 W C GTV ++ + A AG S +D A L +I + DG V + Sbjct: 317 WKSLCLCHGTVHDEHR-VEGAEAGWSRIVTPTVVAIDSAPDSSLTTISWAGKNQDGQVQI 375 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 37.0 bits (84), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 123/308 (39%), Gaps = 29/308 (9%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAFDVAAQM 134 +R+ +A I ++R GKT +LA +M+Y L + G + + + + KQ + F M Sbjct: 140 KRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTM 199 Query: 135 VKFSPILSKRLKVVDYKKRIYD----------AKTNSFYDVIAADAKSALGSNPSGCGAD 184 +K + I + K + + + D K N+ I+ +A + + D Sbjct: 200 LK-TVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFD 258 Query: 185 EILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPD-NP 243 EI + + +G Q + + ST+ + + F + E + +D D Sbjct: 259 EIGEVTNREKISKIVSGQVMVENHQFVQI-STSYPDPSVPFRKDQKTLQEAMEKDWDREA 317 Query: 244 DFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 D V+ ++ E + E W +NP L + + K + RN+ + + F Sbjct: 318 DTSLCLVWAQDDLSE--TFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDF 375 Query: 304 K---LNQW-QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI 359 + LN W Q ++ + ++ F + GQ C+ G+D + D +I Sbjct: 376 QTKNLNMWLQQDVDSYLNLADVEKAIIPEF--------SIHGQRCYIGIDYSMMSDNTAI 427 Query: 360 CYLFPQSD 367 ++FP D Sbjct: 428 AFVFPYLD 435 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 36.6 bits (83), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 63/308 (20%), Positives = 123/308 (39%), Gaps = 29/308 (9%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAFDVAAQM 134 +R+ +A I ++R GKT +LA +M+Y L + G + + + + KQ + F M Sbjct: 137 KRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTM 196 Query: 135 VKFSPILSKRLKVVDYKKRIYD----------AKTNSFYDVIAADAKSALGSNPSGCGAD 184 +K + I + K + + + D K N+ I+ +A + + D Sbjct: 197 LK-TVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFD 255 Query: 185 EILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPD-NP 243 EI + + +G Q + + ST+ + + F + E + +D D Sbjct: 256 EIGEVTNREKISKIVSGQVLVKNHQFVQI-STSYPDPSVPFRKDQKTLQEAMEKDWDREA 314 Query: 244 DFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 D V+ ++ E + E W +NP L + + K + RN+ + + F Sbjct: 315 DTSLCLVWAQDDLSE--TFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDF 372 Query: 304 K---LNQW-QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI 359 + LN W Q ++ + ++ F + GQ C+ G+D + D +I Sbjct: 373 QTKNLNMWLQQDVDSYLNLADVEKAIIPEF--------SIHGQRCYIGIDYSMMSDNTAI 424 Query: 360 CYLFPQSD 367 ++FP D Sbjct: 425 AFVFPYLD 432 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/388 (19%), Positives = 148/388 (38%), Gaps = 44/388 (11%) Query: 77 RRYEIAWIELARKNGKTELLAGIMLYLLVAD--GEQSGEIYGVARDKKQAALAFDVAAQM 134 +R+ A I + R GKT +LA +M Y + G + + + + KQ + M Sbjct: 129 KRFSRAIISVGRGQGKTYMLAILMAYSFFVESRGLSNQDFLVSSINAKQTGKLYGYLKSM 188 Query: 135 VKFSPILSKRLKVVDYKK------RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILA 188 + ++ + D +I N+ I+ +A + + DEI Sbjct: 189 INVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQYDSYHFTTAIFDEIGE 248 Query: 189 WQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDF--- 245 + + +G Q + + ST + T F E E++++ DF Sbjct: 249 VKSREKISKIVSGQVKVPNRQFVQI-STAYPDPTVPF-----HEDEKMLQQAMEQDFLRD 302 Query: 246 --KHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 ++ + N ++E + E W +NP L + + + + R+N + A F Sbjct: 303 ADTYLCLIWSNDSLDE-TYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDVLTGAVHDF 361 Query: 304 K---LNQWQNSTI-RWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI 359 + LN W +S I ++ + D K V + N GQ C+ G+D + D ++ Sbjct: 362 QCKNLNMWLSSDIDSYLNLA--DVEKAIVPEFN------IYGQRCYVGVDYSMSSDNTAV 413 Query: 360 CYLFPQSDGSVDLLW----RHWIPESALAKLD--RLNDGRFAKEFVPGGWLKVT---EGD 410 +++P W +IP A ++ DG +E G+ +T +G Sbjct: 414 AFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYRELETKGFCTITSHQQGL 473 Query: 411 VLD---FDVVYDDIEADSKRFTILGGDA 435 + D ++ + + IE +S G DA Sbjct: 474 INDDEFYEWIVNYIEENSLDVLFFGYDA 501 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/306 (20%), Positives = 124/306 (40%), Gaps = 30/306 (9%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVAD-GEQSGEIYGVARDKKQAALAF 128 DE G + + +I R GK LL+ ++ + G I VA + QA +F Sbjct: 87 DEDGDKQLMFNDYFIYAGRGFGKNGLLSCMIFECTTKNHGVDHYNIDIVATSEDQAKTSF 146 Query: 129 DVAAQMVKFSPILSK---RLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADE 185 + M++ + K R +V + R K S ++A++ GS P DE Sbjct: 147 EDIYNMLEENKDTMKNVYRWNLVAIQHR----KNGSTIKYKTSNARTKDGSRPGAVAFDE 202 Query: 186 ILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDF 245 A++D + +G+G R + + TT G G + + + + + + P+ Sbjct: 203 EHAYEDYSNYAVHTSGLGKKERSRRFHL--TTDGY-VRGSVLDDRKVLAQQVLNGEKPNS 259 Query: 246 KHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQA------AEARNNPIAEMA 299 K +F ++ ++ N+ W ANP + L ++ +R + A++ + + E Sbjct: 260 K-MFPFICKLDSPDEVQNKTKWAKANPMI---LYYKPLRIEIDQHWDDAQSSSEIMVEFM 315 Query: 300 FRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI 359 ++ +T+ WD+ K T N+ + + G+D A RD C++ Sbjct: 316 TKRMNCPTQDPTTV----AVKWDDIKAT----NQPM-PSLKMAPAIGGIDFADVRDFCAV 366 Query: 360 CYLFPQ 365 LF + Sbjct: 367 GLLFKK 372 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 12/92 (13%) Query: 267 WPHANPALGRFLSWEAMRKQAAEARNNPI--AEMAFRQFKLNQWQNSTIRWMRMPAWDEC 324 + ANPALG LS E ++K A NP+ A++ ++F L+ ++TI ++ D+C Sbjct: 265 YIKANPALGYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNLSMTDSTTIFSKQLV--DKC 322 Query: 325 KGTVFKSNKDLFDAFAGQSCWFGLDLAARRDL 356 F+G+ G D + R D+ Sbjct: 323 LVPPLD--------FSGRLVAIGSDFSVRGDV 346 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 86 LARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRL 145 + R+NGKT+L+A ++Y L GE+ I A+ + +D +++K P L +RL Sbjct: 104 IPRQNGKTQLIALRIIYGLFFLGEK---IVYTAQRWQTVKDVYDRIVEIIKRRPSLLRRL 160 Query: 146 K 146 K Sbjct: 161 K 161 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 30.0 bits (66), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Query: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIR 314 ++ + E W +NP L + + K + R++ + F+ LN W + ST Sbjct: 307 DETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDS 366 Query: 315 WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW 374 ++ + ++ F + G + G D + D ++ +++P DG + Sbjct: 367 YLNLKDVEDAVYNDFNID--------GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQ 418 Query: 375 RHWIP 379 +IP Sbjct: 419 HSFIP 423 >gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp2, terminase # Family: family:all:523 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456732;genbank:gi:157168375;interpro:I PR005021;uniprot:Q9MBK3;genbank:GeneID:5580375 Length = 542 Score = 28.9 bits (63), Expect = 0.15, Method: Compositional matrix adjust. Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 47/336 (13%) Query: 86 LARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSK-- 143 + R+NGKT ++ + L+ L DG EI A+D A A + K +P L++ Sbjct: 77 VGRQNGKTLVMVILGLWKLFIDG--CSEIVTAAQDLSVAEATLSNAFMLAKANPDLNQWL 134 Query: 144 -----RLKVVDYKK--------RIYDAKTNSFYDVIAADAKSALGSNPSGCG-------- 182 R ++V + + + A DV A K + + G G Sbjct: 135 PWRMERGEMVPFMRTANGSNQIELAYAPVPEALDVFGAMPKWFVVATNRGGGRSHSAELA 194 Query: 183 -ADEILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPD 241 DE+ D W ++ + R Q V + D + K R + Sbjct: 195 MLDELREHTDFQSWGAITPAVAERPRNQ---VYGFSNAGDEKSVVLRKQRNICLKEISDG 251 Query: 242 NPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWE----AMRKQAAEARNNPIAE 297 D + ++ + P E ++ + W ANP+LG E ++ + A + ++ E Sbjct: 252 ITDQSQLAIFEWSAPEECSIFDRDGWAAANPSLGYGNRDEKTMLSLARAALDPEDDEADE 311 Query: 298 MAFRQFKLNQWQNSTIRW-MRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDL 356 FR L QW + + ++ WD K + + ++D A +D+ R Sbjct: 312 NLFRIEYLCQWVKTLEQGKVKRDTWDALKDSDSRRDED-----APIEVAVDVDVDGRS-- 364 Query: 357 CSICYLFPQSDGSVDL------LWRHWIPESALAKL 386 SI + DG V L HW+ E A+L Sbjct: 365 TSITIASYREDGHVHLETVAHRTGYHWVTEWLRARL 400 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 28.5 bits (62), Expect = 0.22, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 88/244 (36%), Gaps = 44/244 (18%) Query: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSI- 359 R+F LNQ S W+ WD+C T + G G D + D ++ Sbjct: 336 RKF-LNQVNASEDSWLAPADWDKCHSTSLRP------LTKGDKITLGFDGSKSNDWTALV 388 Query: 360 -CYLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVY 418 C + DG+V L+ +W PE+ G KE V V ++VV Sbjct: 389 ACRV---EDGAVFLI-DYWNPEN-------YPSGEVPKEDVDA----VVRSMKDKYEVVA 433 Query: 419 DDIEADSKRFTILGGDADQWSSDPVIQEIEKRTYLYED------IFAYKNDFAHMSDSMH 472 AD K F DQW ++ +RT F + + Sbjct: 434 --FRADVKEFEAY---VDQWG------QLFRRTIKVNASPGNPVAFDMRGQTKRFALDCE 482 Query: 473 RIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVM 532 R + L + L H NP+ + + YD IR KP + + ++IDA +V+ Sbjct: 483 RFADAVLEQELVHDNNPVMKAHITNAHRHPTIYDAISIR--KPSK-ASKRKIDAAVCSVL 539 Query: 533 ATNA 536 A A Sbjct: 540 AFGA 543 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 403 WLKVTEGDVLDFDVVYDDIEA 423 WL + G+V+D ++YD +EA Sbjct: 255 WLDILAGEVIDTGILYDALEA 275 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 26.6 bits (57), Expect = 0.91, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 403 WLKVTEGDVLDFDVVYDDIEA 423 WL + GD +D V+YD +EA Sbjct: 255 WLDILAGDAIDTGVLYDALEA 275 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 26.6 bits (57), Expect = 0.92, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 403 WLKVTEGDVLDFDVVYDDIEA 423 WL + GD +D V+YD +EA Sbjct: 596 WLDILAGDAIDTGVLYDALEA 616 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Query: 150 YKKRIYDAKTNSFYDVIAADAKSALGSNPS----GCGADEILAW 189 YK + DA ++FYD + A A+ +NP+ + +LAW Sbjct: 314 YKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAW 357 >gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: PacB # Family: family:all:144 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006576;genbank:gi:46401730;genbank:GeneID :2777432 Length = 494 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 163 YDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSG 205 YD IAA A G P+ + I + Q G W S+ +G G+G Sbjct: 20 YDWIAA-ADVLFGKTPTWQQDEIIESTQQDGSWTSVTSGHGTG 61 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Query: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADG 108 D FG + R+ A + + R+NGKT + A + Y L D Sbjct: 56 DAFG--RLRFRKALVIVGRQNGKTLIAAVLAAYWLYVDA 92 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:Gene ID:4157223 Length = 545 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 31 FFEEILVHTKGQYTRKKFILEDWQRDDIVR--PLFGRVEYSDEFGCYKRRYEIAWIELAR 88 F E+ +V G + + L+D +R + R L+ R + +RR+E A +EL + Sbjct: 23 FIEDRMVFGPGSLSGQPARLDDEKRALVYRLYELYPRGHHL----AGRRRFERAGVELRK 78 Query: 89 KNGKTELLAGI 99 KTE A I Sbjct: 79 GVAKTEFAAWI 89 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 150 YKKRIYDAKTNSFYDVIAADAKSALGSNPS 179 YK + DA ++FYD + A A+ +NP+ Sbjct: 570 YKIDVVDALIDAFYDAMYAFEDYAITNNPT 599 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:Gene ID:4157626 Length = 545 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 31 FFEEILVHTKGQYTRKKFILEDWQRDDIVR--PLFGRVEYSDEFGCYKRRYEIAWIELAR 88 F E+ +V G + + L+D +R + R L+ R + +RR+E A +EL + Sbjct: 23 FIEDRMVFGPGSLSGQPARLDDEKRALVYRLYELYPRGHHL----AGRRRFERAGVELRK 78 Query: 89 KNGKTELLAGI 99 KTE A I Sbjct: 79 GVAKTEFAAWI 89 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 23.9 bits (50), Expect = 5.8, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 150 YKKRIYDAKTNSFYDVIAADAKSALGSNPS 179 YK + DA ++FYD + A A+ +NP+ Sbjct: 568 YKIDVVDALIDAFYDGMYAFEDYAITNNPT 597 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 150 YKKRIYDAKTNSFYDVIAADAKSALGSNPS 179 YK + DA ++FYD + A A+ +NP+ Sbjct: 568 YKIDVVDALIDAFYDGMYAFEDYAITNNPT 597 >gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: putative phage terminase large subunit # Family: family:all:144 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239275;genbank:gi:66392134;genbank:GeneID :5076615 Length = 473 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 398 FVPGGWLKVTEGDVLDFDVVY 418 + PGG+L++ +G + DVVY Sbjct: 68 YTPGGYLEMMKGLIDAGDVVY 88 >gi|4997|lcl|protein:vir:95108 Length: 186 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240830;genbank:gi:66394694;genbank:GeneID :5133902 Length = 186 Score = 23.1 bits (48), Expect = 8.6, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|10367|lcl|protein:vir:97420 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240756;genbank:gi:66396432;genbank:GeneID :5133776 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|1609|lcl|protein:vir:93735 Length: 186 # NCBI annotation: ORF022 # Family: family:all:913 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240466;genbank:gi:66396135;genbank:GeneID :5133504 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|9948|lcl|protein:vir:97324 Length: 186 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240618;genbank:gi:66396288;genbank:GeneID :5133680 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|14961|lcl|protein:vir:1245 Length: 186 # NCBI annotation: similar to phage Spp1 gp17.1 # Family: family:all:913 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510944;genbank:gi:17426278;genbank:GeneID :927369 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|3194|lcl|protein:vir:94487 Length: 186 # NCBI annotation: ORF026 # Family: family:all:913 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240683;genbank:gi:66396358;genbank:GeneID :5133751 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|4274|lcl|protein:vir:94793 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240543;genbank:gi:66396214;genbank:GeneID :5133573 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 >gi|6295|lcl|protein:vir:95960 Length: 186 # NCBI annotation: ORF023 # Family: family:all:913 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240392;genbank:gi:66396063;genbank:GeneID :5133471 Length = 186 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 363 FPQSDGSVDLLWRHWIPESALAKLDRLND 391 F +DG+++ L + W+ SALA + D Sbjct: 134 FNSADGTINDLPKEWLNPSALAPVVEFED 162 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.136 0.432 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,789 Number of Sequences: 514 Number of extensions: 13886 Number of successful extensions: 259 Number of sequences better than 100.0: 92 Number of HSP's better than 100.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 105 length of query: 556 length of database: 206,069 effective HSP length: 76 effective length of query: 480 effective length of database: 167,005 effective search space: 80162400 effective search space used: 80162400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)