BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021061.1_cdsid_YP_007869824.1 [gene=13] [protein=major tail subunit] [protein_id=YP_007869824.1] [location=7898..8956] (352 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp4... 132 4e-33 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 105 9e-25 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 105 9e-25 gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp1... 105 1e-24 gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp... 105 1e-24 gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp... 105 1e-24 gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp3... 88 2e-19 gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp1... 87 4e-19 gi|8237|lcl|protein:vir:101512 Length: 280 # NCBI annotation: gp... 27 0.44 gi|9086|lcl|protein:vir:102193 Length: 280 # NCBI annotation: gp... 27 0.44 gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp... 26 0.77 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 24 3.4 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 23 5.8 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 23 6.2 >gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp49 # Family: family:all:1912 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817900;genbank:gi:29566333;genbank:GeneID :1259528 Length = 271 Score = 132 bits (333), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/265 (38%), Positives = 133/265 (50%), Gaps = 23/265 (8%) Query: 1 MAQPNTGVSFKASGLGIFDTLRIRRGGKWNLLVRDYKGSATNISPTGDFG------APMA 54 MA P+TG S++A G G D+ RGG +L+RD +G TNISP +P A Sbjct: 1 MAIPSTGTSWRAGGFGDVDSRFNNRGGLAAILIRDNRGPDTNISPWASGNPPTRNWSPFA 60 Query: 55 LDGNWRDDLLAVKKNAKGQWVYNNKPNLGFHLLGAANPDGFAQEH-DINVDELEILQSID 113 DGN RDDL A G WV N +PN GFHL+GA DG + DI+ D ILQS Sbjct: 61 EDGNPRDDLFA-HILVDGDWVTNPEPNEGFHLIGALTEDGGPERAPDISNDNQMILQSNM 119 Query: 114 PARVDLTSRAKRIVFTGYEN-KPLLHRLINDLPLDN------ILDLGSGTYFSGESAEID 166 P DLTS + I FTG E KPL+ RL +L L + + D G+ + G+ + + Sbjct: 120 PFDSDLTSESLSINFTGVETVKPLMKRLRMNLALSDSDGNSIVEDPGTENFGIGKPVDNE 179 Query: 167 FFERQMILIHEDKAGGKPERVAFPVSRCVRTGIGNLTGTKTDPLSAQLTFARLLDPWFVD 226 E Q+IL+ + GK A S C IG +KTDP + L + L DP+FV Sbjct: 180 GPEYQIILMFARRKRGKFLYTAEGYSLCKLNDIGAFRRSKTDPDAGSLGYMVLPDPYFVG 239 Query: 227 GDG--------APLIGGVWVSGEAW 243 D PL WVSGE+W Sbjct: 240 KDPNNPDSDELIPLYYHEWVSGESW 264 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 105 bits (262), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 151/331 (45%), Gaps = 28/331 (8%) Query: 22 RIRRGGKWNLLVRDYKGSATNISPTGDFGAPMALDGNWRDDLLAVKKNAKGQWVYNNKPN 81 RIR+ ++L+RD+K + + DF DGN +D LL+ + P Sbjct: 15 RIRKWLYGSVLIRDWKPDGS--TSLADFTPFDPTDGNLKDTLLS-----------EDFPG 61 Query: 82 LGFHLLGAANPDGFAQEHDINVDELEILQSIDPARVDLTSRAKRIVFTGYENKPLLHRLI 141 F+ +GA DG + D+ +I QS R D+T + ++FT EN PL+ L Sbjct: 62 GRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLR 121 Query: 142 NDLPLDNILDLGSGTYFSGESAEIDFFERQMILIHEDKAGGKPERVAFPVSRCVRTGIGN 201 +LPL+N+ +G+ Y + + D RQ+++I D + E VA R T +G Sbjct: 122 YNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGK 181 Query: 202 LTGTKTDPLSAQLTFARLLDPWFVDGDGAPLIGGVWVSGEAWDESVAPGLTFVPPAPEVT 261 + + +LTF DP G A I G G W ES P L P PEV Sbjct: 182 QSFKAKEIDGTELTFGVYPDP--ASGFPARRIPG----GPFWAESGGPVLW---PTPEVA 232 Query: 262 PT---GPTAATITFAEVLGGASPYTYSVEKSANADMSSASSATVGTTTVD-DGVVTLTLT 317 P G TI E + +P+TY+V S + ++ ++ VG D DG VT+T+ Sbjct: 233 PVATLGTDEVTIVLQEPVSPNTPFTYTV--SQTSGGTTTAATLVGEPVTDEDGEVTITVE 290 Query: 318 GLTASSTSYFQVTVTDADGDTALSMVTAAAT 348 S + F+VT ++G+TA S + + T Sbjct: 291 APATSGSYTFKVTAEGSNGETAESQASNSVT 321 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 105 bits (262), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 151/331 (45%), Gaps = 28/331 (8%) Query: 22 RIRRGGKWNLLVRDYKGSATNISPTGDFGAPMALDGNWRDDLLAVKKNAKGQWVYNNKPN 81 RIR+ ++L+RD+K + + DF DGN +D LL+ + P Sbjct: 15 RIRKWLYGSVLIRDWKPDGS--TSLADFTPFDPTDGNLKDTLLS-----------EDFPG 61 Query: 82 LGFHLLGAANPDGFAQEHDINVDELEILQSIDPARVDLTSRAKRIVFTGYENKPLLHRLI 141 F+ +GA DG + D+ +I QS R D+T + ++FT EN PL+ L Sbjct: 62 GRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLR 121 Query: 142 NDLPLDNILDLGSGTYFSGESAEIDFFERQMILIHEDKAGGKPERVAFPVSRCVRTGIGN 201 +LPL+N+ +G+ Y + + D RQ+++I D + E VA R T +G Sbjct: 122 YNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGK 181 Query: 202 LTGTKTDPLSAQLTFARLLDPWFVDGDGAPLIGGVWVSGEAWDESVAPGLTFVPPAPEVT 261 + + +LTF DP G A I G G W ES P L P PEV Sbjct: 182 QSFKAKEIDGTELTFGVYPDP--ASGFPARRIPG----GPFWAESGGPVLW---PTPEVA 232 Query: 262 PT---GPTAATITFAEVLGGASPYTYSVEKSANADMSSASSATVGTTTVD-DGVVTLTLT 317 P G TI E + +P+TY+V S + ++ ++ VG D DG VT+T+ Sbjct: 233 PVATLGTDEVTIVLQEPVSPNTPFTYTV--SQTSGGTTTAATLVGEPVTDEDGEVTITVE 290 Query: 318 GLTASSTSYFQVTVTDADGDTALSMVTAAAT 348 S + F+VT ++G+TA S + + T Sbjct: 291 APATSGSYTFKVTAEGSNGETAESQASNSVT 321 >gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817349;genbank:gi:29565777;genbank:GeneID :1259036 Length = 269 Score = 105 bits (261), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 135/271 (49%), Gaps = 24/271 (8%) Query: 1 MAQPNTGVSFKASGLGIFDTLRIRRGGKWNLLVRDYKGSATNISPTGDFG-----APMAL 55 M QP TG + A G I RGG + +RD +G+AT++SP D +P A Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 Query: 56 DGNWRDDLLAVKKNAKGQWVYNNKPNLGFHLLGAANPDGFAQ-EHDINVDELEILQSIDP 114 DG RDDL +++ G++ YN PN G+ +G DG A+ E D+ D+L +LQS P Sbjct: 61 DGKLRDDLF-IRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFP 119 Query: 115 ARVDLTSRAKRIVFTGYEN-KPLLHRLINDLPL-DN-----ILDLGSGTYFSGESAEIDF 167 ++T ++ + F PL+HRL ++LPL DN + G+ Y G + D Sbjct: 120 VDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADS 179 Query: 168 FERQMILIHEDK-AGGKPERV-AFPVSRCVRTGIGNLTGTKTDPLSAQLTFARLLDPWFV 225 E Q++L++ + +GG R +P + + +KTDP +A LT+ L + +F+ Sbjct: 180 AEYQLLLLYARRTSGGFIYRAEGYPAVKL--DDQASKQRSKTDPDTADLTYKVLPNEYFM 237 Query: 226 DGDGA---PLIGG---VWVSGEAWDESVAPG 250 D A L+ G VW+ G W E + G Sbjct: 238 RPDPAGTIALVPGYFYVWMGGPGWAEQYSDG 268 >gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655772;genbank:gi:109522095;genbank:GeneI D:4157635 Length = 269 Score = 105 bits (261), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 135/271 (49%), Gaps = 24/271 (8%) Query: 1 MAQPNTGVSFKASGLGIFDTLRIRRGGKWNLLVRDYKGSATNISPTGDFG-----APMAL 55 M QP TG + A G I RGG + +RD +G+AT++SP D +P A Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 Query: 56 DGNWRDDLLAVKKNAKGQWVYNNKPNLGFHLLGAANPDGFAQ-EHDINVDELEILQSIDP 114 DG RDDL +++ G++ YN PN G+ +G DG A+ E D+ D+L +LQS P Sbjct: 61 DGKLRDDLF-IRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFP 119 Query: 115 ARVDLTSRAKRIVFTGYEN-KPLLHRLINDLPL-DN-----ILDLGSGTYFSGESAEIDF 167 ++T ++ + F PL+HRL ++LPL DN + G+ Y G + D Sbjct: 120 VDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADS 179 Query: 168 FERQMILIHEDK-AGGKPERV-AFPVSRCVRTGIGNLTGTKTDPLSAQLTFARLLDPWFV 225 E Q++L++ + +GG R +P + + +KTDP +A LT+ L + +F+ Sbjct: 180 AEYQLLLLYARRTSGGFIYRAEGYPAVKL--DDQASKQRSKTDPDTADLTYKVLPNEYFM 237 Query: 226 DGDGA---PLIGG---VWVSGEAWDESVAPG 250 D A L+ G VW+ G W E + G Sbjct: 238 RPDPAGTIALVPGYFYVWMGGPGWAEQYSDG 268 >gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_655007;genbank:gi:109392197;genbank:GeneI D:4157232 Length = 269 Score = 105 bits (261), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 135/271 (49%), Gaps = 24/271 (8%) Query: 1 MAQPNTGVSFKASGLGIFDTLRIRRGGKWNLLVRDYKGSATNISPTGDFG-----APMAL 55 M QP TG + A G I RGG + +RD +G+AT++SP D +P A Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFIERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPFAQ 60 Query: 56 DGNWRDDLLAVKKNAKGQWVYNNKPNLGFHLLGAANPDGFAQ-EHDINVDELEILQSIDP 114 DG RDDL +++ G++ YN PN G+ +G DG A+ E D+ D+L +LQS P Sbjct: 61 DGKLRDDLF-IRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKFP 119 Query: 115 ARVDLTSRAKRIVFTGYEN-KPLLHRLINDLPL-DN-----ILDLGSGTYFSGESAEIDF 167 ++T ++ + F PL+HRL ++LPL DN + G+ Y G + D Sbjct: 120 VDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDADS 179 Query: 168 FERQMILIHEDK-AGGKPERV-AFPVSRCVRTGIGNLTGTKTDPLSAQLTFARLLDPWFV 225 E Q++L++ + +GG R +P + + +KTDP +A LT+ L + +F+ Sbjct: 180 AEYQLLLLYARRTSGGFIYRAEGYPAVKL--DDQASKQRSKTDPDTADLTYKVLPNEYFM 237 Query: 226 DGDGA---PLIGG---VWVSGEAWDESVAPG 250 D A L+ G VW+ G W E + G Sbjct: 238 RPDPAGTIALVPGYFYVWMGGPGWAEQYSDG 268 >gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp31 # Family: family:all:1912 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID :1260104 Length = 334 Score = 87.8 bits (216), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 151/360 (41%), Gaps = 44/360 (12%) Query: 1 MAQPNTGVSFKASGLGIFDTLRIRRGGKWNLLVRDYK---GSATNISP------TGDFGA 51 MA P G ++ + L +R+ ++L+RDY+ G+ N++ F + Sbjct: 1 MALPANGGTYANLLQPGINPLTVRKAIITDILIRDYRNLDGTVHNLADPAVGLGNDGFFS 60 Query: 52 PMALDGNWRDDLLAVKKNAKGQWVYNNKPNLGFHLLGAANPDGFAQEHDINVDELEILQS 111 P A DG R DLL LGF+ LGA + DG +D +V + I QS Sbjct: 61 PFAEDGKLRSDLLG-------------DNGLGFYHLGALHEDGTEMTYDTDVADTMIAQS 107 Query: 112 IDPARVDLTSRAKRIVFTGYENKPLLHRLINDLPLDNILDLGSGTYFSGESAEIDFFERQ 171 R D+T I E PL+ L D PL ++ D+G Y + AE ERQ Sbjct: 108 KRAVRFDVTQDNDGITIKALEGTPLVDALRYDKPLHSLADVGQAHYTIAKDAETKLVERQ 167 Query: 172 MILIHEDKAGGKPERVAFPVSRCVRTGIGNLTGTKTDPLSAQLTFARLLDPWFVDGDGAP 231 +I I D G FP R GN + K D ++ LL P+ G P Sbjct: 168 VIAIGFD--GDNYFAQTFP--RMSLRNRGNSSWNKADADVMEIELGALLCPFV----GKP 219 Query: 232 LIGGVWVSGEAWDESVAPGLTFVPPAPEVTPTGPTAATITFAEVLGGASPYTYSVEKSAN 291 +W E D G AP A +TF + ++ Y Y VEKS N Sbjct: 220 ---ALW-HREGADWRGLQGYPLFATAPTAVAVAGEMADVTFDKPTSKSTSYEYEVEKS-N 274 Query: 292 ADMSSASSATV----GTTTVDDGVVTLTLTGLTASSTSYFQVTVTDADGDTALSMVTAAA 347 D ++ + A + GT T VT+ ++G+T+S++ F+V T + T S TA+A Sbjct: 275 DDGATWTDAVIEDVSGTAT-----VTIRVSGVTSSASWKFRVKATGTNALTTTSAPTASA 329 >gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp12 # Family: family:all:1912 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817689;genbank:gi:29566120;genbank:GeneID :1259314 Length = 265 Score = 86.7 bits (213), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 127/264 (48%), Gaps = 26/264 (9%) Query: 1 MAQPNTGVSFKASGLGIFDTLRIRRGGKWNLLV---RDYKGSATNISPTGDFG----APM 53 M QP TG + A G D R++ G + L+ RD G++TNISP G +P+ Sbjct: 1 MTQPLTGTTPAAGGYTTVDN-RLQGGHRTGLIAVAFRDALGTSTNISPHNANGTVRWSPL 59 Query: 54 ALDGNWRDDLLAVKKNAKGQWVYNNKPNLGFHLLGA-ANPDGFAQEHDINVDELEILQSI 112 A DG RDDL A K + G WV N PN G++L GA +G + I+ D+ I QS Sbjct: 60 AQDGQLRDDLFAHKLES-GVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSN 118 Query: 113 DPARVDLTSRAKRIVFTGYEN-KPLLHRLINDLPLDN-----ILDL-GSGTYFSGESAEI 165 P D+T + + F +N P + RL N+LPL + +++L G FS + + Sbjct: 119 WPFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFS-QPVDA 177 Query: 166 DFFERQMILIHEDKAGGK--PERVAFPVSRCVRTGIGNLTGTKTDPLSAQLTFARLLDPW 223 + RQ +L K G+ E A+ ++ G L T +A+LTF + Sbjct: 178 EKIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRGT---AAELTFKPEPSGY 234 Query: 224 F---VDGDGAPLIGGVWVSGEAWD 244 F VDG+ P+I ++ G AWD Sbjct: 235 FMAMVDGEYKPIIKHTFIGGPAWD 258 >gi|8237|lcl|protein:vir:101512 Length: 280 # NCBI annotation: gp25 # Family: family:all:5054 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655404;genbank:gi:109522592;genbank:GeneI D:4157584 Length = 280 Score = 26.6 bits (57), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 25/113 (22%) Query: 251 LTFVP-PAPEVTP-------TGPTAATITFAEVLGGASPYTYSVEKSANADMSSASSATV 302 LT P P P +P T T+ +T+ EV+G Y V+KS++A ++ + Sbjct: 181 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADE---YRVQKSSDAGVTWS----- 232 Query: 303 GTTTVDD-GVVTLTLTGLTASSTSYFQVTVTDADGDTALSMVTA--AATQPAS 352 VDD T+T++ LTAS+ F+V +ALS+ +A T PAS Sbjct: 233 ---LVDDVDTATITISDLTASTAYQFRVATKVG---SALSVYSAPLPVTTPAS 279 >gi|9086|lcl|protein:vir:102193 Length: 280 # NCBI annotation: gp24 # Family: family:all:5054 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655220;genbank:gi:109522800;genbank:GeneI D:4157432 Length = 280 Score = 26.6 bits (57), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 25/113 (22%) Query: 251 LTFVP-PAPEVTP-------TGPTAATITFAEVLGGASPYTYSVEKSANADMSSASSATV 302 LT P P P +P T T+ +T+ EV+G Y V+KS++A ++ + Sbjct: 181 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADE---YRVQKSSDAGVTWS----- 232 Query: 303 GTTTVDD-GVVTLTLTGLTASSTSYFQVTVTDADGDTALSMVTA--AATQPAS 352 VDD T+T++ LTAS+ F+V +ALS+ +A T PAS Sbjct: 233 ---LVDDVDTATITISDLTASTAYQFRVATKVG---SALSVYSAPLPVTTPAS 279 >gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp11 # Family: family:all:698 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285587;genbank:gi:148727093;genbank:Ge neID:5247041 Length = 213 Score = 25.8 bits (55), Expect = 0.77, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 83 GFHLLGAANPDGFAQEHDINVDELEILQSIDPARVDLTSRAKRIVFTGYENKPLLHRL 140 G LG + DGF + + D+L+ Q+ D R T + I F E+K + L Sbjct: 38 GLTALGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIEL 95 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 15/44 (34%) Query: 58 NWRDDLLAVKKNAKG--QWV-------------YNNKPNLGFHL 86 N+RD+ LA K G +W YN+ P++G+HL Sbjct: 208 NYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHL 251 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID :1262528 Length = 504 Score = 23.1 bits (48), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 43 ISPTGDF-GAPMALDGNWRDDLLAVKKNAKG 72 I P G G PM LD +D +LAV N G Sbjct: 16 IVPEGKLIGQPMRLDPFQKDFILAVYDNPAG 46 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 22.7 bits (47), Expect = 6.2, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 15/44 (34%) Query: 58 NWRDDLLAVKKNAKG--QWV-------------YNNKPNLGFHL 86 N+RD+ +A K G +W YN+ P++G+HL Sbjct: 208 NYRDNTIAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHL 251 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.315 0.133 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 164,675 Number of Sequences: 514 Number of extensions: 7853 Number of successful extensions: 57 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 16 length of query: 352 length of database: 206,069 effective HSP length: 72 effective length of query: 280 effective length of database: 169,061 effective search space: 47337080 effective search space used: 47337080 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 37 (18.9 bits)