BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_020883.1_cdsid_YP_007678077.1 [gene=K203_gp51] [protein=hypothetical protein] [protein_id=YP_007678077.1] [location=22040..23329] (429 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 176 6e-46 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 165 1e-42 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 161 1e-41 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 160 3e-41 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 160 3e-41 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 160 3e-41 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 160 3e-41 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 160 3e-41 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 149 6e-38 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 121 2e-29 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 118 2e-28 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 113 4e-27 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 109 5e-26 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 108 1e-25 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 107 2e-25 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 107 2e-25 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 107 2e-25 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 107 3e-25 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 105 1e-24 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 105 1e-24 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 104 2e-24 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 102 7e-24 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 98 2e-22 gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp... 91 2e-20 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 71 2e-14 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 71 3e-14 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 71 3e-14 gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18... 65 1e-12 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 61 2e-11 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 59 2e-10 gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: te... 57 5e-10 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 56 7e-10 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 56 8e-10 gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 55 2e-09 gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: Ter... 50 6e-08 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 47 6e-07 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 44 3e-06 gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hyp... 44 5e-06 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 40 5e-05 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 35 0.002 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 33 0.009 gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: termin... 32 0.021 gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: ter... 31 0.031 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 30 0.041 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 30 0.041 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 26 1.0 gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: h... 25 1.2 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 24 2.9 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 23 4.8 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 23 5.1 gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hyp... 23 6.0 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 176 bits (445), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 136/433 (31%), Positives = 229/433 (52%), Gaps = 54/433 (12%) Query: 1 MTTVTKEVAPRFEDYIFD--WDQERYLLV--GGYGSSKSYNTAVKLLLKAISEK----RK 52 + V K + F +I+D ++ + V GG S KS+ K++LKA++ K RK Sbjct: 9 INIVIKHPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPRK 68 Query: 53 ILVIREVFDTHRESTFS-LLTEVAYELGLGERARITASPMKITLPNGSEFIFRGMDNPQK 111 ILV+R+V T R+S F+ +++ ++Y G+ ++ +I S +ITLPNG+EFIF+GMDNP+K Sbjct: 69 ILVLRKVGATVRDSVFADIMSNLSY-FGILDKCKINMSAFRITLPNGAEFIFKGMDNPEK 127 Query: 112 LKSINNVSIIWVEECSEVKYEGFKELLGRLRHPD-LSTHMLLTTNPVSTQNWVYTHFFKD 170 +KSI +S + +EE SE + + +L RLR L + L NPVS NWVY FF Sbjct: 128 IKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKVNWVYKAFF-- 185 Query: 171 ELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAW 230 KT + VY +T +DN F+ R+N+++L N + ++I Sbjct: 186 ---------------VKTPKNTVVY--QTTYKDNRFLDDVTRENIEELANRNEAYYKIYA 228 Query: 231 KGHFGLTGKKVLPRFESAPHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKE 290 G F K + P+++ +++ ++ P + G+D+GF +AL+ + +D Sbjct: 229 LGQFATLDKLIFPKYDK----QILNK-DKLSHLPSF-FGLDYGFINDPSALLHVKIDDAN 282 Query: 291 QILYIYWEYYKRGITDDVM---LEDLKPHRREIRETIKADSAEPKTIEYMRRHGWA-ITK 346 + LYI EY ++ +T+D + ++DL + EIR DSAE K+ + +R G + Sbjct: 283 KKLYILEEYVRKNLTNDKIANAIKDLGYAKEEIR----GDSAEKKSNQELRNLGIPRMID 338 Query: 347 AKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKDGRVMEDEFNIDP---- 402 K G+ +Q + + ++ I+ ++C TI EL+N T+K DK +E+ +P Sbjct: 339 VTKGPGTVMQGIQYLLQYDWIV-DERCVKTIEELENYTWKKDKK----TNEYTNEPVDSY 393 Query: 403 -HTLSAIWYGLDD 414 H + AI Y + D Sbjct: 394 NHCIDAIRYAVQD 406 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 165 bits (417), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 123/412 (29%), Positives = 206/412 (50%), Gaps = 41/412 (9%) Query: 16 IFDWDQERYLLVGGYGSSKSYNTAVKLLLKAISE---KRKILVIREVFDTHRESTFSLLT 72 +FD+ + GG S KS+ K++LK++ RK+L +R+V T + S F+ +T Sbjct: 23 LFDYSHLTEVWYGGASSGKSHGVVQKVVLKSLQHWNVPRKVLWLRKVDRTVKNSIFTDVT 82 Query: 73 EVAYELGLGERARITASPMKITLPNGSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYE 132 E + + + S I LPNG+ F+F+GMD+P+K+KSI +S + +EE SE + Sbjct: 83 ECLSGWNILQYCHVNRSDKTIVLPNGAIFLFQGMDDPEKIKSIKGLSDVVMEEASEFNHN 142 Query: 133 GFKELLGRLRHPDLSTHMLLTT-NPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVH 191 + +L RLR P + NPVS NW Y +F D Y++ + Sbjct: 143 DYTQLTLRLREPKHKQRQIFCMFNPVSKLNWTYQTWF----------DPSADYDRSRVA- 191 Query: 192 NGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLPRFESA--- 248 H ST +DN F+ + +++LKN++ ++I G F K V P FE+ Sbjct: 192 ----IHQSTYKDNRFLDEDNIRTIEELKNTNPAYYKIYTLGEFATLDKLVFPYFETKRLN 247 Query: 249 PHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDV 308 P + + + G+D+GF +A + + +D + + LY+ E+ K+G+ ++ Sbjct: 248 PRDPKLLALNDY-------FGLDYGFINDPSAFMHIKLDMRNKTLYVMDEFVKKGLLNNQ 300 Query: 309 MLEDLKPHRREIRETIKADSAEPKTIEYMRRHG-WAITKAKKFQGSRLQYTKKVRRFKKI 367 + + +K +E I ADSAE K+I M+R G + I A K S +Q + +++FK + Sbjct: 301 LAQVIKDMGYS-KEVITADSAEKKSIAEMKRDGIYRIRPALKGPDSIIQGIQFLQQFKWV 359 Query: 368 ICSDQCKNTIMELKNLTYKVDKDGRVMEDEFNIDP-----HTLSAIWYGLDD 414 + D+C TI EL+N TY DK DE+ P H + AI Y +++ Sbjct: 360 V-DDRCVKTIEELQNYTYVKDKK----TDEYTNRPIDAYNHCIDAIRYAVEE 406 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 161 bits (408), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/383 (31%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + + G+ + + K+ LPN Sbjct: 70 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPN 129 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 130 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNP 189 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 190 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 232 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E++ P Y G+DFG+ Sbjct: 233 LLANRNPAYYKIYALGEFATLDKLVFPKYEK-------RLINKDELRHLPSY-FGLDFGY 284 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + +D K++ LYI EY K+G+ +D + +K RE I ADSAE K+I Sbjct: 285 VNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK-QLGYAREEITADSAEQKSI 343 Query: 335 EYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 +R G I KK +GS +Q + + +F +II ++C TI E N T++ DKD G Sbjct: 344 AELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 393 VMEDEFNIDPHTLSAIWYGLDDY 415 + + H + ++ Y ++ + Sbjct: 403 YTNEPVDTYNHCIDSLRYSVERF 425 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 160 bits (405), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + + G+ + + K+ LPN Sbjct: 70 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPN 129 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 130 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNP 189 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 190 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 232 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E++ P Y G+DFG+ Sbjct: 233 LLANRNPAYYKIYALGEFATLDKLVFPKYEK-------RLINKDELRHLPSY-FGLDFGY 284 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + +D K++ LYI EY K+G+ +D + +K +E I ADSAE K+I Sbjct: 285 VNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK-QLGYAKEEITADSAEQKSI 343 Query: 335 EYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 +R G I KK +GS +Q + + +F +II ++C TI E N T++ DKD G Sbjct: 344 AELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 393 VMEDEFNIDPHTLSAIWYGLDDY 415 + + H + ++ Y ++ + Sbjct: 403 YTNEPVDTYNHCIDSLRYSVERF 425 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 160 bits (405), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + + G+ + + K+ LPN Sbjct: 48 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVGLPN 107 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 108 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLIFNP 167 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 168 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 210 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E++ P Y G+DFG+ Sbjct: 211 LLANRNPAYYKIYALGEFATLDKLVFPKYEK-------RLINKDELRHLPSY-FGLDFGY 262 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + +D K++ LYI EY K+G+ +D + +K +E I ADSAE K+I Sbjct: 263 VNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK-QLGYAKEEITADSAEQKSI 321 Query: 335 EYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 +R G I KK +GS +Q + + +F +II ++C TI E N T++ DKD G Sbjct: 322 AELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVDERCFKTIEEFDNYTWQKDKDTGE 380 Query: 393 VMEDEFNIDPHTLSAIWYGLDDY 415 + + H + ++ Y ++ + Sbjct: 381 YTNEPVDTYNHCIDSLRYSVERF 403 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 160 bits (404), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + + G+ + + K+ LPN Sbjct: 70 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPN 129 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 130 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNP 189 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 190 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 232 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E++ P Y G+DFG+ Sbjct: 233 LLANRNPAYYKIYALGEFSTLDKLVFPKYEK-------RLINKDELRHLPSY-FGLDFGY 284 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + +D K++ LYI EY K+G+ +D + +K +E I ADSAE K+I Sbjct: 285 VNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK-QLGYAKEEITADSAEQKSI 343 Query: 335 EYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 +R G I KK +GS +Q + + +F +II ++C TI E N T++ DKD G Sbjct: 344 AELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 393 VMEDEFNIDPHTLSAIWYGLDDY 415 + + H + ++ Y ++ + Sbjct: 403 YTNEPVDTYNHCIDSLRYSVERF 425 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 160 bits (404), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + + G+ + + K+ LPN Sbjct: 70 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPN 129 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 130 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNP 189 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 190 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 232 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E++ P Y G+DFG+ Sbjct: 233 LLANRNPAYYKIYALGEFSTLDKLVFPKYEK-------RLINKDELRHLPSY-FGLDFGY 284 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + +D K++ LYI EY K+G+ +D + +K +E I ADSAE K+I Sbjct: 285 VNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK-QLGYAKEEITADSAEQKSI 343 Query: 335 EYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 +R G I KK +GS +Q + + +F +II ++C TI E N T++ DKD G Sbjct: 344 AELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 393 VMEDEFNIDPHTLSAIWYGLDDY 415 + + H + ++ Y ++ + Sbjct: 403 YTNEPVDTYNHCIDSLRYSVERF 425 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 160 bits (404), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + + G+ + + K+ LPN Sbjct: 48 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPN 107 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 108 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNP 167 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 168 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 210 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E++ P Y G+DFG+ Sbjct: 211 LLANRNPAYYKIYALGEFATLDKLVFPKYEK-------RLINKDELRHLPSY-FGLDFGY 262 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + +D K++ LYI EY K+G+ +D + +K +E I ADSAE K+I Sbjct: 263 VNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK-QLGYAKEEITADSAEQKSI 321 Query: 335 EYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 +R G I KK +GS +Q + + +F +II ++C TI E N T++ DKD G Sbjct: 322 AELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVDERCFKTIEEFDNYTWQKDKDTGE 380 Query: 393 VMEDEFNIDPHTLSAIWYGLDDY 415 + + H + ++ Y ++ + Sbjct: 381 YTNEPVDTYNHCIDSLRYSVERF 403 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 149 bits (376), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 115/381 (30%), Positives = 191/381 (50%), Gaps = 35/381 (9%) Query: 41 KLLLKAISE---KRKILVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN 97 K++LKA+ + R+IL +R+V T ++S F + G+ + + K+ LPN Sbjct: 70 KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKGCLINFGIWDMCLWNKTDNKVELPN 129 Query: 98 GSEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRH-PDLSTHMLLTTNP 156 G+ F+F+G+DNP+K+KSI +S I +EE SE + +L RLR ++ + L NP Sbjct: 130 GAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNP 189 Query: 157 VSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLD 216 VS NWVY +FF E + N V S+ +DN F+ R+NL+ Sbjct: 190 VSKLNWVYKYFF----------------EHGEPMEN-VMIRQSSYRDNKFLDEMTRQNLE 232 Query: 217 DLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEVMRMIG--EIKGRPLYKAGMDFGF 274 L N + ++I G F K V P++E R+I E+ P Y G+DFG+ Sbjct: 233 LLANRNPAYYKIYALGEFATLDKLVFPKYEK-------RIISDKEVGHLPSY-FGLDFGY 284 Query: 275 EESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI 334 +A + + +D + LY+ EY K+G+ ++ + + + +E I ADSAE K+I Sbjct: 285 VNDPSAFIHVKIDNDNKKLYVISEYVKKGMLNNEIAQVINDLGYS-KEKITADSAEQKSI 343 Query: 335 EYMRRHGW-AITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKD-GR 392 ++ +G I A K + S + + V +F I+ ++C TI E N T+K DK+ G Sbjct: 344 MEIKTNGIDRIVPAMKGKDSVMAGIQFVSQF-DIVIDERCYKTIEEFDNYTWKKDKNTGE 402 Query: 393 VMEDEFNIDPHTLSAIWYGLD 413 + + H + A+ Y ++ Sbjct: 403 YYNEPVDTYNHCIDALRYAVE 423 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 121 bits (303), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/426 (27%), Positives = 199/426 (46%), Gaps = 45/426 (10%) Query: 4 VTKEVAPRFEDYIFDWDQERYLLV-GGYGSSKSYNTAVKLLLKAISEKR-KILVIREVFD 61 V+K P F ++RYL+ G GS KSY TA K+++ + LV R+ Sbjct: 23 VSKAYYPMFNS------RDRYLVYKGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYAT 76 Query: 62 THRESTFSLLTEVAYELGLGERARITASPMKITLPN-GSEFIFRGMDNPQKLKSINNVSI 120 T ++STF+ + +VA+ +G+ + + T SP++IT G + FRGMD+P K+ SI V+ Sbjct: 77 TQKDSTFATIRKVAHSMGVLDLFKFTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTG 136 Query: 121 I----WVEECSEVK----YEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDEL 172 W EE E+K ++ +E + P ++T NP S ++W+ FF Sbjct: 137 FICRRWCEEAYELKSLDAFDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFF---- 192 Query: 173 NGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKG 232 DDK + +T +DN + Y +L ++ + + R+A G Sbjct: 193 ------DDKTKRNHSRAIT-------TTYKDNDHLNADYVDSLKEMLVRNPNRARVAVLG 239 Query: 233 HFGLTGKKVLPR-FESAPHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQ 291 +G+ V FE + EI P G+DFGF+ A + VDQ + Sbjct: 240 EWGIAEGLVFDGLFEQRDFS-----YDEIANLPK-SVGLDFGFKHDPTAGEFIAVDQDNR 293 Query: 292 ILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI-EYMRRHGWA-ITKAKK 349 I+YIY E+YK+ + + + ++L H + I ADSAE + I E ++H I + K Sbjct: 294 IVYIYDEFYKQHLLTNQIAQELAKH-KAFGLPITADSAEQRMIVELSQQHRVPNIKPSGK 352 Query: 350 FQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIW 409 + S +Q + ++ + + + + K + E Y +DK+G + + + H + A+ Sbjct: 353 GKDSVIQGIQYMQSY-RFVVHPRVKGLMEEFNTYVYDMDKEGNWLNKPKDANNHAIDALR 411 Query: 410 YGLDDY 415 Y L+ Y Sbjct: 412 YALEKY 417 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 118 bits (295), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/402 (26%), Positives = 185/402 (46%), Gaps = 39/402 (9%) Query: 28 GGYGSSKSYNTAVKLLLKAISEK-RKILVIREVFDTHRESTFSLLTEVAYELGLGERARI 86 GG GS KS TA+ ++ + +LV+R +T+++ST++ L A L + + Sbjct: 34 GGRGSKKSKTTALYYIVAILKYNWANLLVVRRFSNTNKQSTYTDLKWAANRLNVSHLFKF 93 Query: 87 TASPMKITL-PNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEV----KYEGFKEL 137 S +IT+ G + +FRG+D+P K+ SI +S +W+EE +V K+E E Sbjct: 94 NESLPEITVKATGQKILFRGLDDPLKITSITVDTGLLSWLWLEEAYQVENQDKFETLVES 153 Query: 138 L-GRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 + G + PD + +T NP S ++W+ + FF ++ + V D Sbjct: 154 IRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDEDTRKKDVFADT--------------- 198 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPH--AEVM 254 +T + N ++ +DL ++ + G +G+ V +E + Sbjct: 199 --TTYRVNEWLDQQDIDRYEDLWRTNPRRAAVVANGDWGVAEGLVFENYEVKDFDIVSTI 256 Query: 255 RMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLK 314 + IGE AG+DFGF R+ VD +++ L+IY E+Y+ +T D + + + Sbjct: 257 KRIGETT------AGLDFGFTHDPTTFPRLAVDLEKKELWIYAEHYEHAMTTDDIFKMIV 310 Query: 315 PHRREIRETIKADSAEPKTIEYMRRHGWA-ITKAKKFQGSRLQYTKKVRRFKKIICSDQC 373 + I ADSAE + I ++ G + + K +GS +++FK I C Sbjct: 311 DADMQ-NAVITADSAEQRLIAELQAKGIRRLVPSIKGKGSINAGIDFMKQFK-IYIHPSC 368 Query: 374 KNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLDDY 415 TI E YK DKDG+ + + + + H + AI Y L+ Y Sbjct: 369 IKTIEEFDTYIYKQDKDGKWLNEPIDSNNHIIDAIRYALERY 410 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 113 bits (283), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 183/404 (45%), Gaps = 35/404 (8%) Query: 25 LLVGGYGSSKSYNTAVKLLLKAIS-EKRKILVIREVFDTHRESTFSLLTEVAYELGLGER 83 ++ G GS KS TA+ L+ + + + ILV+R +T+++ST++ L +LG+ Sbjct: 27 VVKGSRGSKKSKTTAINLIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 Query: 84 ARITASPMKITL-PNGSEFIFRGMDNPQKLKSIN-NVSII---WVEECSEVK-YEGFKEL 137 + S +IT P G + +FRG+D+P K+ SI + I+ W EE +++ + F + Sbjct: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 Query: 138 LGRLR----HPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNG 193 + +R P+ + +T NP S ++W+ FF +E N Sbjct: 147 VESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETK-----------------LNN 189 Query: 194 VYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHAEV 253 + +T + N ++ + +DL + RI G +G+ V F+ E Sbjct: 190 TFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFK----VED 245 Query: 254 MRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRG-ITDDVMLED 312 E K GMDFGF + +V VVD K + L+IY E+YK+ +TDD+ Sbjct: 246 FDWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAMLTDDIKQML 305 Query: 313 LKPHRREIRETIKADSAEPKTIEYMRRHGW-AITKAKKFQGSRLQYTKKVRRFKKIICSD 371 +K ++ + + I ++ G I KA K + L + ++ F ++I Sbjct: 306 IKKGLGDVDIAADYGAGGDRVISELKSKGIKGIRKALKGANTILPGIQFIQGF-EVIIHP 364 Query: 372 QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLDDY 415 C++ I E T+ D DG+ + + + H + A+ Y L+ Y Sbjct: 365 SCEHAIEEFNTYTFDQDNDGKWLNKPIDANNHIIDALRYSLEKY 408 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 109 bits (273), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 109/414 (26%), Positives = 181/414 (43%), Gaps = 48/414 (11%) Query: 20 DQERYLLV--GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYE 77 D+E+ +V GG GS KS + ++ + + +V+R+ +T S F + E Sbjct: 24 DREKLNIVAKGGRGSGKSSDISIIITQLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEE 83 Query: 78 LGLGERARITASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYE 132 + ++ SPM+IT +P G+ IFRG NP++LKS+ + SI+W+EE +E K E Sbjct: 84 QKVSHLFKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTE 143 Query: 133 G------FKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQ 186 L G L P Q+WV + + Sbjct: 144 DEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKY------------------E 185 Query: 187 KTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP--- 243 + + + HHST DNPF+ + + + K + +R + G G V+P Sbjct: 186 TSFQPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGE--AIGSGVVPFNN 243 Query: 244 -RFESAPHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKR 302 + E P ++ + I+ +DFG+ A VR D+K++I+Y E+Y Sbjct: 244 LQIEKIPD-DLYKTFDNIRN------AVDFGYATDPLAFVRWHYDKKKRIIYAVDEHYGV 296 Query: 303 GITDDVMLEDLKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKK- 360 I++ LK R + I ADSAEPK+I E + HG K K +++ ++ Sbjct: 297 QISNREFANWLK-RRGYQSDEIYADSAEPKSIAELKQEHGIKRIKGVKKGPDSVEHGEQW 355 Query: 361 VRRFKKIICS-DQCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + I+ ++ N E +N+ Y+ DKDG V + D HT+ A Y L+ Sbjct: 356 LDDLTAIVIDPNRTPNIAREFENIDYETDKDGNVKPRLEDKDNHTIDATRYALE 409 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 108 bits (269), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 108/404 (26%), Positives = 178/404 (44%), Gaps = 46/404 (11%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG GS KS + A+ ++L + L++R++ +T S F + +G+ +I Sbjct: 32 GGRGSGKSSDIAIIIVLLIMRYPVNALILRKIDNTLALSVFEQIKWAINVMGVSHLFKIK 91 Query: 88 ASPMKIT-LPNGSEFIFRGMDNPQKLKSINNV----SIIWVEECSEVKYEG-FKELLGRL 141 SPM+IT +P G++ +FRG NP+++KS+ + +I W+EE +E K E + L Sbjct: 92 VSPMEITYVPRGNKMVFRGAQNPERIKSLKDAQFPYAIAWIEELAEFKTEDEVTTITNSL 151 Query: 142 RHPDLSTHMLL----TTNPVS-TQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 +L + T NP Q+WV + + + + + Sbjct: 152 LRGELDNGLFYKFFYTYNPPKRKQSWVNKKY------------------ESSFQPDNTFV 193 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFESAPHAE 252 HHST +NPF+ + + K ++ R W+ G V+P R E+ P E Sbjct: 194 HHSTYLNNPFIAKEFIEEAKAAKA--INELRYRWEYLGEAIGSGVVPFNNLRIETIPK-E 250 Query: 253 VMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLED 312 I+ +DFG+ A VR D+K++I+Y E+Y I++ Sbjct: 251 QFDTFDNIRN------AVDFGYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANW 304 Query: 313 LKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSD 371 LK + E I ADSAEPK+I E + H K K +++ ++ I D Sbjct: 305 LKKKGYQSDE-IYADSAEPKSIAELKQEHSIRRIKGVKKGPDSVEHGEQWLNDLDAIVID 363 Query: 372 QCK--NTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DKDG V + D HT+ A Y L+ Sbjct: 364 PTRTPNIAREFENIDYQTDKDGNVKPRLEDKDNHTIDATRYALE 407 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 107 bits (268), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/405 (26%), Positives = 185/405 (45%), Gaps = 36/405 (8%) Query: 23 RYLLVGGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGE 82 +Y+L GG GS+KS + A+ ++L + LVIR V++T +S F L E L +G Sbjct: 28 KYVLKGGRGSAKSTHIAMWIILLMMMMPITFLVIRRVYNTVEQSVFEQLKEAIDMLEVGH 87 Query: 83 RARITASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYEG---- 133 +++ SP+++T +P G+ IFRG D+ QK+KSI V+ +W+EE +E K E Sbjct: 88 LWKVSKSPLRLTYIPRGNSIIFRGGDDVQKIKSIKASKFPVAGMWIEELAEFKTEEEVSV 147 Query: 134 -FKELLGRLRHPDLSTHMLLTTNPVS-TQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVH 191 K +L P + NP Q+WV F + + Sbjct: 148 IEKSVLRAELPPGCRYIFFYSYNPPKRKQSWVNKVF------------------NSSFLP 189 Query: 192 NGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLPRFESAPHA 251 + HST NPF+ ++ + +++K + +R + G G V+P FE+ Sbjct: 190 ANTFVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHEYLGE--ALGSGVVP-FENLQIE 246 Query: 252 EVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLE 311 E + E+ + G+DFG+ A VR D+++ +Y E ++ + Sbjct: 247 EGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDKRKNRIYAIDELVDHKVSLKRTAD 306 Query: 312 DLKPHRREIRETIKADSAEPKTIEYMR-RHGWA-ITKAKKFQGSRLQYTKKVRRFKKIIC 369 ++ ++ E I ADS+EP++I+ ++ HG I AKK S + + I+ Sbjct: 307 FVRKNKYESARII-ADSSEPRSIDALKLEHGINRIEGAKKGPDSVEHGERWLDELDAIVI 365 Query: 370 SD-QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DK+G + + D HT+ A Y + Sbjct: 366 DPLRTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFE 410 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 107 bits (268), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 109/404 (26%), Positives = 170/404 (42%), Gaps = 46/404 (11%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG GS KS + ++ + + +VIR+ +T S F + E + ++ Sbjct: 34 GGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVK 93 Query: 88 ASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYEG------FKE 136 SPM+IT +P G+ IFRG NP++LKS+ + SI W+EE +E K E Sbjct: 94 VSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTITNSL 153 Query: 137 LLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 L G L P Q+WV + + + + Y Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKY------------------ESSFQADNTYV 195 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFESAPHAE 252 HHST +NPF+ + + + K + +R + G G V+P R E P + Sbjct: 196 HHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE--AIGSGVVPFNNLRIEEIPQRQ 253 Query: 253 VMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLED 312 I+ +DFG+ A VR D+K++++Y EYY I++ Sbjct: 254 -YDTFDNIRN------AVDFGYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANW 306 Query: 313 LKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSD 371 LK + E I ADSAEPK+I E + HG K K +++ ++ I D Sbjct: 307 LKKKGYQSDE-IFADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVID 365 Query: 372 --QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DKDG V + D HT+ A Y L+ Sbjct: 366 PRRTPNIAREFENIDYETDKDGNVKPKLEDKDNHTIDATRYALE 409 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 107 bits (268), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 109/404 (26%), Positives = 170/404 (42%), Gaps = 46/404 (11%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG GS KS + ++ + + +VIR+ +T S F + E + ++ Sbjct: 34 GGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVK 93 Query: 88 ASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYEG------FKE 136 SPM+IT +P G+ IFRG NP++LKS+ + SI W+EE +E K E Sbjct: 94 VSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTITNSL 153 Query: 137 LLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 L G L P Q+WV + + + + Y Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKY------------------ESSFQADNTYV 195 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFESAPHAE 252 HHST +NPF+ + + + K + +R + G G V+P R E P + Sbjct: 196 HHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE--AIGSGVVPFNNLRIEEIPQRQ 253 Query: 253 VMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLED 312 I+ +DFG+ A VR D+K++++Y EYY I++ Sbjct: 254 -YDTFDNIRN------AVDFGYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANW 306 Query: 313 LKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSD 371 LK + E I ADSAEPK+I E + HG K K +++ ++ I D Sbjct: 307 LKKKGYQSDE-IFADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVID 365 Query: 372 --QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DKDG V + D HT+ A Y L+ Sbjct: 366 PRRTPNIAREFENIDYETDKDGNVKPKLEDKDNHTIDATRYALE 409 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 107 bits (267), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 120/444 (27%), Positives = 202/444 (45%), Gaps = 71/444 (15%) Query: 10 PRFEDYIFDWDQERY-LLVGGYGSSKSYNTAVKLLLKAISEKRK---ILVIREVFDTHRE 65 P F++ F ++RY + G GS KS N A +LK +K + +LV+R+ TH+ Sbjct: 13 PDFKEANFT--KKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKSEATHKY 70 Query: 66 STFSLLTEVAYELGLGERA----RITASPMKI-TLPNGSEFIFRGMDNP---QKLKSIN- 116 ST++ LT + G++A + T +P++I + G+ IFRG+++ +KLKSIN Sbjct: 71 STYAELTGAINRI-YGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINF 129 Query: 117 ---NVSIIWVEECSEVKYEGFKELLGRLR----HPDLSTHMLLTTNPVSTQNWVYTHFFK 169 ++ +W EE +E+ L RLR +P+L M T NPVS +W+ +F Sbjct: 130 SKGKLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFD 189 Query: 170 DELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIA 229 + DD ++ HHST N F+ +Y + + K D + +++ Sbjct: 190 ------YKNDD-------------IFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVY 230 Query: 230 WKGHFGLTGKKVLPRFESAPHAEVMRMIGEIKGRPLYKAGM----DFGFEESFNALVRMV 285 G +G TG +L + +I E Y M DFGF + N ++R+ Sbjct: 231 GLGEWGETGGAILKNY----------VIHEFPTESEYFDNMRLSQDFGFNHA-NVVLRIG 279 Query: 286 VDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTIEYMRRHGWAIT 345 E LYI E Y + +++ E + DSAEP I+ + G+ Sbjct: 280 FKDGE--LYICNEIYAHEMDTSEIIKIANSIGLEKTLFMYCDSAEPDRIKMWKSAGYKAK 337 Query: 346 KAKKFQGS---RLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVD-KDGRVMEDEFNID 401 KK GS ++ Y K++R I C NTI E++ +K D + G +++ Sbjct: 338 GVKKGPGSVKAQIDYLKQLR----IHVHPSCTNTIKEIQQWKWKQDERTGLYLDEPVEFM 393 Query: 402 PHTLSAIWYGLDDYDPLDLKNHAM 425 ++A+ Y +D+ LKN+ + Sbjct: 394 DDAMAALRYSIDN----KLKNNGI 413 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 105 bits (261), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 108/404 (26%), Positives = 171/404 (42%), Gaps = 46/404 (11%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG GS KS + ++ + + +VIR+ +T S F + E + ++ Sbjct: 34 GGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVTHLFKVK 93 Query: 88 ASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYEG------FKE 136 SPM+IT +P G+ IFRG NP++LKS+ + SI W+EE +E K E Sbjct: 94 VSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTITNSL 153 Query: 137 LLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 L G L P Q+WV + + + + + Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKY------------------ESSFQADNTFV 195 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFESAPHAE 252 HHST +NPF+ + + + K + +R + G G V+P R E P Sbjct: 196 HHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE--AIGSGVVPFNNLRIEEIPQ-- 251 Query: 253 VMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLED 312 G+ + +DFG+ A VR D+K++++Y E+Y I++ Sbjct: 252 -----GQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANW 306 Query: 313 LKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSD 371 LK + E I ADSAEPK+I E + HG KA K ++Y ++ + I D Sbjct: 307 LKKKGYQSDE-IFADSAEPKSIAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVID 365 Query: 372 --QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DKDG V + D H + A Y L+ Sbjct: 366 PRRTPNIAREFENIDYQTDKDGNVKPKLEDKDNHAIDATRYALE 409 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 105 bits (261), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 107/404 (26%), Positives = 171/404 (42%), Gaps = 46/404 (11%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG GS KS + ++ + + +VIR+ +T S F + E + ++ Sbjct: 34 GGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVK 93 Query: 88 ASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYEG------FKE 136 SPM+IT +P G+ IFRG NP++LKS+ + S+ W+EE +E K E Sbjct: 94 VSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSVAWIEELAEFKTEDEVTTITNSL 153 Query: 137 LLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 L G L P Q+WV + + + + + Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKY------------------ESSFQADNTFV 195 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFESAPHAE 252 HHST +NPF+ + + + K + +R + G G V+P R E P Sbjct: 196 HHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE--AIGSGVVPFNNLRIEEIPQ-- 251 Query: 253 VMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLED 312 G+ + +DFG+ A VR D+K++++Y E+Y I++ Sbjct: 252 -----GQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANW 306 Query: 313 LKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSD 371 LK + E I ADSAEPK+I E + HG KA K ++Y ++ + I D Sbjct: 307 LKKKGYQSDE-IFADSAEPKSIAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVID 365 Query: 372 --QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DKDG V + D H + A Y L+ Sbjct: 366 PRRTPNIAREFENIDYQTDKDGNVKPKLEDKDNHAIDATRYALE 409 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 104 bits (260), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 168/404 (41%), Gaps = 46/404 (11%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG GS KS + ++ + + +VIR+ +T S F + E + ++ Sbjct: 34 GGRGSGKSSDISIIITQLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVK 93 Query: 88 ASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYEG------FKE 136 SPM+IT +P G+ IFRG NP++LKS+ + SI W+EE +E K E Sbjct: 94 VSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSISWIEELAEFKTEDEVTTITNSL 153 Query: 137 LLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYY 196 L G L P Q+WV + + + + Y Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKY------------------ESSFQADNTYV 195 Query: 197 HHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFESAPHAE 252 HHST +NPF+ + + + K + +R + G G V+P R E P + Sbjct: 196 HHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGE--AIGSGVVPFNNLRIEEIPQRQ 253 Query: 253 VMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLED 312 + +DFG+ A VR D+K++++Y E+Y I++ Sbjct: 254 YDTFDN-------IRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANW 306 Query: 313 LKPHRREIRETIKADSAEPKTI-EYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSD 371 LK + E ADSAEPK+I E + HG K K +++ ++ I D Sbjct: 307 LKKKGYQSDEVF-ADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVID 365 Query: 372 --QCKNTIMELKNLTYKVDKDGRVMEDEFNIDPHTLSAIWYGLD 413 + N E +N+ Y+ DKDG V + D HT+ A Y L+ Sbjct: 366 PRRTPNIAREFENIDYETDKDGNVKPKLEDKDNHTIDATRYALE 409 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 102 bits (255), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 165/378 (43%), Gaps = 46/378 (12%) Query: 54 LVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKIT-LPNGSEFIFRGMDNPQKL 112 +V+R+ +T S F + + + ++ SPM+IT +P G+ IFRG NP++L Sbjct: 60 VVVRKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPMEITYMPRGNRIIFRGAQNPERL 119 Query: 113 KSINN----VSIIWVEECSEVKYEG------FKELLGRLRHPDLSTHMLLTTNPVSTQNW 162 KS+ + SI+W+EE +E K E L G L P Q+W Sbjct: 120 KSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDEGLFYKFFFSYNPPKRKQSW 179 Query: 163 VYTHFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSD 222 V + + + + + HHST DNPF+ + + K + Sbjct: 180 VNKKY------------------ESSFQPDNTFVHHSTYLDNPFIAKQFIDEAEAAKERN 221 Query: 223 MDLWRIAWKGHFGLTGKKVLP----RFESAPHAEVMRMIGEIKGRPLYKAGMDFGFEESF 278 +R + G G V+P + E P E+ R I+ +DFG+ Sbjct: 222 ELRYRWEYLGE--AIGSGVVPFNNLQIEKIPD-ELFRSFDNIRN------AVDFGYATDP 272 Query: 279 NALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTIEYMR 338 A VR D+K++++Y EYY I++ + L + + I ADSAEPK+I+ +R Sbjct: 273 LAFVRWHYDKKKRVIYAVDEYYGVQISNRQFGKWLWSKGYQ-SDDIYADSAEPKSIDELR 331 Query: 339 R-HGWAITKAKKFQGSRLQYTKK-VRRFKKIICS-DQCKNTIMELKNLTYKVDKDGRVME 395 + HG K K ++Y ++ + I+ ++ N E +N+ ++ DKDG V Sbjct: 332 KEHGIKRIKGVKKGPDSVEYGEQWLNDLDAIVIDPNRTPNIAREFENIDFETDKDGNVKP 391 Query: 396 DEFNIDPHTLSAIWYGLD 413 + D HT+ A Y L+ Sbjct: 392 KLEDKDNHTIDATRYALE 409 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 112/439 (25%), Positives = 181/439 (41%), Gaps = 72/439 (16%) Query: 20 DQERYLLV--GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYE 77 D+E+ +V GG GS KS + ++ + + +V+R+ +T S F + E Sbjct: 23 DREKLNIVAKGGRGSGKSSDISIIITQLIMRYPMNAVVVRKADNTLATSVFEQIKWAIEE 82 Query: 78 LGLGERARITASPMKIT-LPNGSEFIFRGMDNPQKLKSINN----VSIIWVEECSEVKYE 132 + ++ SPM+IT +P G+ IFRG NP++LKS+ + SI+W+EE +E K E Sbjct: 83 QKVSHLFKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTE 142 Query: 133 G------FKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQ 186 L G L P Q+WV + + Sbjct: 143 DEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKY------------------E 184 Query: 187 KTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP--- 243 + + + HHST DNPF+ + + + K + +R + G G V+P Sbjct: 185 TSFQPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGE--AIGSGVVPFNN 242 Query: 244 -RFESAP------------------------HAEVMRMIGE-IKGRPLYKAGMDFGFEES 277 + E P H++V +GE I G D Sbjct: 243 LQIEKIPDELYKSFDNIRNAVDFGLTKTAPLHSDVYSKLGEHISGVRKKACATDPL---- 298 Query: 278 FNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADSAEPKTI-EY 336 A VR D+K++I+Y E+Y I++ LK R + I ADSAEPK+I E Sbjct: 299 --AFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLK-RRGYQSDEIYADSAEPKSIAEL 355 Query: 337 MRRHGWAITKAKKFQGSRLQYTKK-VRRFKKIICS-DQCKNTIMELKNLTYKVDKDGRVM 394 + HG K K +++ ++ + I+ ++ N E +N+ Y+ DKDG V Sbjct: 356 KQEHGIKRIKGVKKGPDSVEHGEQWLDDLTAIVIDPNRTPNIAREFENIDYETDKDGNVK 415 Query: 395 EDEFNIDPHTLSAIWYGLD 413 + D HT+ A Y L+ Sbjct: 416 PRLEDKDNHTIDATRYALE 434 >gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp2 # Family: family:all:54 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneID :3342458 Length = 439 Score = 90.9 bits (224), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 114/446 (25%), Positives = 184/446 (41%), Gaps = 90/446 (20%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRK-----ILVIREVFDTHRESTFSLLTEVAYELG--- 79 GG GS+K+ A+ +KA IL RE ++ ES+ + + + Sbjct: 29 GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIRSVAWLD 88 Query: 80 ----LGERARITASPMKITLPNGSEFIFRGM-DNPQKLKSINNVSIIWVEECSEVKYEGF 134 +GE+ I K++ ++F G+ N +KS + + WV+E V + Sbjct: 89 DYFDIGEK-YIRTKNRKVS------YVFCGLRHNLDSIKSKARILVAWVDEAESVSSTAW 141 Query: 135 KELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKTIVHNGV 194 K+L +R + + +T NP + F K+ +++ Sbjct: 142 KKLRPTVREE--GSEIWVTWNPEKDGSATDKLFRKNPPKSSMIVE--------------- 184 Query: 195 YYHHSTVQDNPFMPPSYRKN-LDDLKNSDMDLWRIAWKGHF-------GLTGKKVLPRFE 246 DNP+ P + +DL N D + W+G + L K V+ FE Sbjct: 185 ----MNYVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE 240 Query: 247 SAPHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITD 306 + R++ G DFGF + + L+RM + + LYI +E Y G+ Sbjct: 241 DNLWRKSERLL----------FGADFGFAKDPSTLIRMFI--LDNNLYIEYEAYGNGVEL 288 Query: 307 DVM--------------LEDLK-------PHRREIRE-TIKADSAEPKTIEYMRRHGWAI 344 D M L+D K P E R+ IKAD++ P+TI +++ G+ I Sbjct: 289 DDMWKFYAGKTDATPKQLKDWKVTDDTKFPGIPEARKWPIKADNSRPETISHIKGQGFNI 348 Query: 345 TKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDK-DGRVM---EDEFNI 400 + A+K+QGS +R FKKII +CK T E + +YK D+ G V+ ED+ N Sbjct: 349 SAAQKWQGSVEDGITFLRGFKKIIIHPRCKETAKEARLYSYKTDRITGEVLPIIEDKNN- 407 Query: 401 DPHTLSAIWYGLDDYDPLDLKNHAMI 426 H I YGLD Y K+ M+ Sbjct: 408 --HCWDGIRYGLDGYIKCKPKSMGMM 431 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 71.2 bits (173), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 109/422 (25%), Positives = 177/422 (41%), Gaps = 39/422 (9%) Query: 1 MTTVTKEVAPRFEDYIFDWDQERYLLVGGYGS---SKSYNTAVKLLLKAISEKRKILVIR 57 MTT E+ P+ + +F+ + G YGS KS+N A + EK +IL R Sbjct: 1 MTTKKIELPPKILE-VFEQPRGAVRFRGAYGSRGSGKSFNFAKMAAIWGAIEKMRILCTR 59 Query: 58 EVFDTHRESTFS-LLTEVAYELGLGERARITASPMKITLPNGSEFIFRGMDNPQ-KLKSI 115 E+ + +ES + L + + L + ++ NG+EF+F+G+ + +KS Sbjct: 60 ELQVSIKESFHAELKNAIKSDEWLSSIYDVGIDYIR-NNNNGTEFLFKGLRHGMGSVKST 118 Query: 116 NNVSIIWVEECSEVKYEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGR 175 + + VEE +V + ELL + D + NP + V F + Sbjct: 119 AQIDLTIVEEAEDVPENAWVELLPTIFRTD-KAECWVIWNPRKKGSPVDKRF------RQ 171 Query: 176 FVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFG 235 F DD + E YY DNPF P K L+DL+ D D H Sbjct: 172 FKPDDAVVVEMN-------YY------DNPFFP----KGLEDLRRHDEDTMPPELYAHVW 214 Query: 236 LTGKKVLPRFESAPHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYI 295 L + + +V ++ P Y G+DFGF + A V+ ++ + +YI Sbjct: 215 LGAYYEHTEAQVFKNWKVEQVNTNGWEGPYY--GLDFGFSQDPTAGVKCWLNGND--VYI 270 Query: 296 YWEYYKRGITDDVMLEDLKPHRREIRET-IKADSAEPKTIEYMRRHGWA-ITKAKKFQGS 353 E K G+ D + L I + + ADSA P++I ++R G I K++GS Sbjct: 271 EKEAGKVGLEIDHTADYLIKRIDGIDDAKVYADSARPESISLLKRTGIPRIEGVPKWKGS 330 Query: 354 RLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVDK-DGRVMEDEFNIDPHTLSAIWYGL 412 ++ + R K+I +C TI E +YK D+ G + + H + AI Y Sbjct: 331 -VEDGVEWLRSKRIFIDPECTETIKEFTYYSYKTDRYTGEIKNQLVDAYNHYIDAIRYCF 389 Query: 413 DD 414 +D Sbjct: 390 ND 391 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 70.9 bits (172), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 27/227 (11%) Query: 8 VAPRFEDYIFDWDQERYLLV-GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRES 66 + P FE +I + RY + GG GS KS+ A L+ A + +IL RE+ ++ +S Sbjct: 4 INPIFEPFI---EAHRYKVAKGGRGSGKSWAIARLLVEAARRQPVRILCARELQNSISDS 60 Query: 67 TFSLLTEVAYELGLGERARITASPMKITLPNGSEFIFRGM-DNPQKLKSINNVSIIWVEE 125 LL + G I S ++ L +EF+F G+ +NP K+KS+ + I WVEE Sbjct: 61 VIRLLEDTIEREGYSAEFEIQRSMIR-HLGTNAEFMFYGIKNNPTKIKSLEGIDICWVEE 119 Query: 126 CSEVKYEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYE 185 V E + L+ +R P + + ++ NP + + Y RFV++ D Sbjct: 120 AEAVTKESWDILIPTIRKP--FSEIWVSFNPKNILDDTYQ---------RFVVNPPDDIC 168 Query: 186 QKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKG 232 T+ + DNP P R +++ K + L+R W G Sbjct: 169 LLTVNYT----------DNPHFPEVLRLEMEECKRRNPTLYRHIWLG 205 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 70.9 bits (172), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 27/227 (11%) Query: 8 VAPRFEDYIFDWDQERYLLV-GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRES 66 + P FE +I + RY + GG GS KS+ A L+ A + +IL RE+ ++ +S Sbjct: 4 INPIFEPFI---EAHRYKVAKGGRGSGKSWAIARLLVEAARRQPVRILCARELQNSISDS 60 Query: 67 TFSLLTEVAYELGLGERARITASPMKITLPNGSEFIFRGM-DNPQKLKSINNVSIIWVEE 125 LL + G I S ++ L +EF+F G+ +NP K+KS+ + I WVEE Sbjct: 61 VIRLLEDTIEREGYSAEFEIQRSMIR-HLGTNAEFMFYGIKNNPTKIKSLEGIDICWVEE 119 Query: 126 CSEVKYEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDLYE 185 V E + L+ +R P + + ++ NP + + Y RFV++ D Sbjct: 120 AEAVTKESWDILIPTIRKP--FSEIWVSFNPKNILDDTYQ---------RFVVNPPDDIC 168 Query: 186 QKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKG 232 T+ + DNP P R +++ K + L+R W G Sbjct: 169 LLTVNYT----------DNPHFPEVLRLEMEECKRRNPTLYRHIWLG 205 >gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18 # Family: family:all:54 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID: 1262312 Length = 469 Score = 65.5 bits (158), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 19/210 (9%) Query: 28 GGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGERARIT 87 GG G K+ + A L+ A KR+ L +RE ++ +S ++L LGL R RI Sbjct: 12 GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSIEDSGHAVLQAEVETLGLQNRFRIL 71 Query: 88 ASPMKITLPNGSEFIFRGMD-NPQKLKSINNVSIIWVEECSEVKYEGFKELLGRLRHPDL 146 + I N S F + + N +KS ++ + WVEE V + L+ +R P Sbjct: 72 NT--YIEGINDSIFKYGQLARNIASIKSKHDFDVAWVEEAETVSEKSLDSLIPTIRKP-- 127 Query: 147 STHMLLTTNPVSTQNWVYTHF---FKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQD 203 + + + NP VY F +K+ ++ + +D DLY K + D Sbjct: 128 GSELWFSFNPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVGKV-----------SYLD 176 Query: 204 NPFMPPSYRKNLDDLKNSDMDLWRIAWKGH 233 NP++P + + +K + WR + G Sbjct: 177 NPWLPAELKNDAQKMKRENYKKWRHVYGGE 206 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 61.2 bits (147), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 9/130 (6%) Query: 1 MTTVTKEVAPRFEDYIFDWDQERYLLVGGYGSSKSYNTAVKLLLKAI-----SEKRKILV 55 M V + + P F++ ++ + +L GG S KS A+KL+ + EK ++V Sbjct: 10 MFNVQENINPHFKE-VWTSSKPYNILKGGRNSFKSSVIALKLVFMMLLYILKGEKANVVV 68 Query: 56 IREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLP-NGSEFIFRGMDNPQKLKS 114 IR+V +T R+S F+ + GL R + T SP KIT GS F F G D+ QKLKS Sbjct: 69 IRKVGNTIRDSVFNKIQWAIKLFGLTRRFKPTVSPFKITHKRTGSTFYFYGQDDFQKLKS 128 Query: 115 --INNVSIIW 122 I ++ +W Sbjct: 129 NDIEDIIAVW 138 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 13/153 (8%) Query: 4 VTKEVAPRFEDYIFDWDQERYLLVGGYGSSKSYNTAVKLLLKAI-----SEKRKILVIRE 58 V K + P F+ ++ +L GG S KS +KL I E I+VIR+ Sbjct: 5 VQKNINPHFKS-VWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRK 63 Query: 59 VFDTHRESTFSLLTEVAYELGLGERARITASPMKIT-LPNGSEFIFRGMDNPQKLKS--I 115 V +T R+S F+ + G+ E+ T SP KI GS F F G D+ QKLKS I Sbjct: 64 VANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDI 123 Query: 116 NNVSIIWVEECSEVK-YEGFKE---LLGRLRHP 144 N+ +W EE +E E F + R +HP Sbjct: 124 GNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHP 156 >gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112491;genbank:gi:53793591;uniprot:Q5ZGG2 ;genbank:GeneID:3101748 Length = 432 Score = 56.6 bits (135), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 26/188 (13%) Query: 54 LVIREVFDTHRESTFSLLTEVAYELGLGERARITASPMKITLPNGSEFIFRGM---DNPQ 110 L+ R +E+T + E A L + E+ A I NGSE + + + + Q Sbjct: 53 LMGRSKLKALKETTLNTFFEQASILKITEQYNYNAQSGVIYWNNGSEILLKDLYAYPSDQ 112 Query: 111 KLKSINNVSI--IWVEECSEVKYEGFKELLGRLRHP----DLSTHMLLTTNPVSTQNWVY 164 S+ ++ I +++EC+++ Y+ ++ + R+R+ + ML T NP +NWVY Sbjct: 113 NFDSLGSLEISGAFIDECNQITYKAWQIVKSRIRYKLNQYGIEPKMLGTCNPA--KNWVY 170 Query: 165 THFFKDELNGRFVLDDKDLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDL-KNSDM 223 F+ + NG D K + + DNP +P SY +L L +NS Sbjct: 171 AQFYLKDKNGTLDNDKK--------------FIQALPTDNPHLPASYLTSLLSLDENSKQ 216 Query: 224 DLWRIAWK 231 L+ W+ Sbjct: 217 RLYYGNWE 224 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 56.2 bits (134), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 6/107 (5%) Query: 28 GGYGSSKSYNTAVKLLLKAISEK-RKILVIREVFDTHRESTFSLLTEVAYELGLGERARI 86 GG S KS ++KL+ K ++ ++ +R+V +T +S + + YE+G+ ++ + Sbjct: 40 GGRSSMKSSVISLKLVEKKMANPMSNMVCLRKVANTLYKSVYQQIKWALYEMGVADQFKF 99 Query: 87 TASPMKITLPN-GSEFIFRGMDNPQKLKS----INNVSIIWVEECSE 128 SPM+I G+ F F G D+P KLKS + VS +W EE +E Sbjct: 100 GKSPMEIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSGLWFEELAE 146 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 55.8 bits (133), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 1 MTTVTKEVAPRFEDYIFDWDQERYLLVGGYGSSKSYNTAVKLLLKAISEK-RKILVIREV 59 + VT + P F D ++ + GG S KS ++KL+ K ++ ++ +R+V Sbjct: 14 VINVTDMINPAFYD-LWLSKHNHIIAKGGRSSMKSSVISLKLVEKKMANPMSNMVCLRKV 72 Query: 60 FDTHRESTFSLLTEVAYELGLGERARITASPMKITLPN-GSEFIFRGMDNPQKLKS---- 114 +T +S + + YE+G+ ++ SPM+I G+ F F G D+P KLKS Sbjct: 73 ANTLYKSVYQQIKWALYEMGVADQFNFGKSPMEIIHKEWGTGFYFSGCDDPAKLKSMKIP 132 Query: 115 INNVSIIWVEECSE 128 + VS +W EE +E Sbjct: 133 VGYVSDLWFEELAE 146 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 54.7 bits (130), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 23/233 (9%) Query: 192 NGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKVLP----RFES 247 + + H ST +DNPF+ + + + +R + G G V+P RFE Sbjct: 38 SNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE--AIGSGVVPFDNLRFER 95 Query: 248 APHAEVMRMIGEIKGRPLYKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDD 307 +V + G+D+G+ A VR D+K+ +Y EYY + I++ Sbjct: 96 ITDEQVADFDN-------IRNGIDYGYATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNR 148 Query: 308 VMLEDLKPHRREIRETIKADSAEPKT-IEYMRRHGWAITKAKKFQGSRLQYTKKVRRFKK 366 + + L + E A+SAEPK+ E G K K +++ ++ Sbjct: 149 QLAKWLTTKGYQSDEMF-AESAEPKSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDLD 207 Query: 367 IICSD--QCKNTIMELKNLTYKVDKDGRV---MEDEFNIDPHTLSAIWYGLDD 414 IC D + N E +N+ Y+VD+DG +ED+ N H + A Y + D Sbjct: 208 FICIDPKRTPNIAREFENIDYQVDRDGNPKPRLEDKVN---HAIDATRYAMSD 257 >gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: TerL-like protein # Family: family:all:54 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039811;genbank:gi:126011061;genbank:Ge neID:4818267 Length = 459 Score = 50.1 bits (118), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 7/163 (4%) Query: 7 EVAPRFEDYIFDWDQERY-LLVGGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRE 65 ++ P D+ D + RY L GG SSKS++ A + A + K L R+ + E Sbjct: 3 DLNPALRDFWLD--KARYKALYGGRASSKSHDAAGFAVYLARNYTVKFLCARQFQNKISE 60 Query: 66 STFSLLTEVAYELGLGERARITASPMKITLPNGSEFIFRGMD-NPQKLKSINNVSIIWVE 124 S ++L+ G + +T S ++ G+EF+F G+ N ++KS V I+W+E Sbjct: 61 SVYTLIKGKIDAAGWTKEFDVTISSIR-HKKTGAEFLFYGIARNLNEIKSTEGVDILWLE 119 Query: 125 ECSEVKYEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHF 167 E + E + + +R + + L NP +++Y +F Sbjct: 120 EAQYLTEEQWNVINPTIRRE--GSQIWLIWNPDQYTDFIYQNF 160 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 46.6 bits (109), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%) Query: 28 GGYGSSKSYNTAVKLLL---KAISEKRK---ILVIREVFDTHRESTFSLLTEVAYELGLG 81 GG GS KS ++KL+ KAI + RK I V+ D H ++ ++ + L + Sbjct: 40 GGRGSFKSSVISLKLVTMVKKAIMQHRKANVIAVLANKSDLH-DTVYNQIQWALSMLDMD 98 Query: 82 ERARITASPMKITLP-NGSEFIFRGMDNPQKLKS--INNVSIIWVEECSEVK 130 SP+ I GS F F G DNP KLKS + +V +W EE + +K Sbjct: 99 NEFIAYKSPLTIQHKRTGSSFYFYGADNPYKLKSNIVGDVVAVWYEEAANMK 150 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 43.9 bits (102), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 5/149 (3%) Query: 21 QERY-LLVGGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELG 79 + RY ++ GG SSKS++ + A + + K L R+ + ES ++L+ + Sbjct: 15 RARYKVIYGGRASSKSHDAGGIAVYLAANYRLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 80 LGERARITASPMKITLPNGSEFIFRGMD-NPQKLKSINNVSIIWVEECSEVKYEGFKELL 138 T + +K GSEF+F G+ N ++KS + I+W+EE + E ++ + Sbjct: 75 YNGEFIFTKNSIKHKR-TGSEFLFYGIARNLSEIKSTEGIDILWLEEAHYLTQEQWEVIE 133 Query: 139 GRLRHPDLSTHMLLTTNPVSTQNWVYTHF 167 +R + + + + NP ++VY +F Sbjct: 134 PTIRKEN--SEIWIIFNPNEVTDFVYQNF 160 >gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hypothetical protein ORF012 # Family: family:all:144 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294520;genbank:gi:149408241;genbank:Ge neID:5237115 Length = 515 Score = 43.5 bits (101), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Query: 92 KITLPNGSEFIFRGMDNPQKLKSINNVSIIWV---EECSEVKYEGFKELLGRLRH--PDL 146 K T P+G E + R M +P+ + + + W+ E C+ + + ++ R P + Sbjct: 135 KWTFPDGEELLLRHMKSPEDYWNYHGHAYPWIGWEELCNWADDKCYTVMMSCCRSTKPGM 194 Query: 147 STHMLLTTNPVST-QNWVYTHFFKDELNGRFVLD---DKDLYEQKTIVHNGVYYHHSTVQ 202 TTNP NWV F + GR +LD D + + +H +Y + + Sbjct: 195 PRCYRATTNPYGPGHNWVKARFRLPHMRGRVILDAMRDGEREPPRVAIHGSIYENQILLH 254 Query: 203 DNP 205 +P Sbjct: 255 ADP 257 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 40.0 bits (92), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 57/146 (39%) Query: 269 GMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRGITDDVMLEDLKPHRREIRETIKADS 328 G D G+ + +R+ D++ +YI E + + +D+ + ++ DS Sbjct: 286 GFDEGYTADPSVWLRVFYDEQRDTVYITDELVMKRYKTKALAKDILNVQEGSYNIVRGDS 345 Query: 329 AEPKTIEYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMELKNLTYKVD 388 A P+ ++ MR G K S T + KI+ +C NT E + D Sbjct: 346 ANPRVLDEMRDLGVNALAVSKSPNSVPHGTNWLANRIKIVIDFKCPNTWREFSSYALLPD 405 Query: 389 KDGRVMEDEFNIDPHTLSAIWYGLDD 414 G + D HT+ Y L++ Sbjct: 406 GVGNRKHGFPDKDNHTIDTTRYALEE 431 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 34.7 bits (78), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%) Query: 266 YKAGMDFGFEESFNALVRMVVDQKEQILYIYWEYYKRG------ITDDVMLEDLKPHRRE 319 Y D+G + N ++ + + Y+ EYY G TD+ DLK + Sbjct: 254 YYVSCDYG---TLNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGD 310 Query: 320 IRETIKADSAEPKTIEYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIME 379 IR + D + +R++G+ + KAK ++ T+ KI S C N E Sbjct: 311 IRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKE 370 Query: 380 LKNLTYKVDKDGRVMEDE 397 L + + DK ED+ Sbjct: 371 LASYVWD-DKAAEHGEDK 387 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 32.7 bits (73), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 26/142 (18%) Query: 144 PDLSTHMLLTTNPVST-QNWVYTHFFKDELNGRFVLDDKDLYEQKT-------IVHNGVY 195 P + + TTNP NWV F G V + +Y T I ++ Sbjct: 191 PPVKCEVFSTTNPSGPGHNWVKRRFITIAPRGTVVRREIQIYNPATEKEETHVISQIAIF 250 Query: 196 YHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAW-KGHFGLTGKK-----------VLP 243 + ++NP++P SY L+ +K ++ R AW G + +T V+P Sbjct: 251 ---GSYKENPYLPASYIAELESIKEPNL---RKAWLYGDWDVTAGGAIDDLWQSHIHVVP 304 Query: 244 RFESAPHAEVMRMIGEIKGRPL 265 RF P + R + P Sbjct: 305 RFVIPPSWRIDRTYDDGSSHPF 326 >gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203458;genbank:gi:15320614;genbank:GeneID :921717 Length = 482 Score = 31.6 bits (70), Expect = 0.021, Method: Compositional matrix adjust. Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 27/185 (14%) Query: 25 LLVGGYGSSKSYNTAVKLLLKAISE--------KRKILVIREVF----DTHRESTFSLLT 72 +VG GS KS V++ +A + + + VIR + DT R++ + Sbjct: 24 CIVGPVGSGKSSGCVVEIPRRAAEQAPGPDGVRRTRFAVIRNTYRELKDTTRKTFEQWVP 83 Query: 73 EVAYELGLGERARITASPMKITLPNGSEFIFRGMDNPQKLKSINNVSII--WVEECSEVK 130 ++ + P+ E +FR +D P+ +K + ++ + +V E +V Sbjct: 84 ALSGRWHEQDFTFTVDKPLSDGTHMHCEVLFRALDRPEHVKKLLSLELTGAYVNEARQVP 143 Query: 131 YEGFKELLGRL-RHPDLST------HMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDKDL 183 L R+ R+P + + + TNP T +W Y F K G +L Sbjct: 144 KAILDVLCSRVGRYPSKAQGGATWFGVWMDTNPWHTGHWGYKLFTKALPEG------YEL 197 Query: 184 YEQKT 188 +EQ + Sbjct: 198 FEQPS 202 >gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: terminase large subunit # Family: family:all:662 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579204;genbank:gi:93007440;genbank:GeneID :5076784 Length = 448 Score = 30.8 bits (68), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 18/124 (14%) Query: 24 YLLVGGYGSSKSYNTAVKLLLKAISEKRKILVIREVFDTHRESTFSLLTEVAYELGLGER 83 +L +GG G+ K+ A + +S + HR S + A E + Sbjct: 54 WLQLGGRGTGKTDGCARFM----VSHVNGPPCDDRIPGGHRMSIIAPTQGDAVESAVNGP 109 Query: 84 ARITASPMKITL-----------PNGSEFIFRGMDNP---QKLKSINNVSIIWVEECSEV 129 + + A ++ L P+G+E G P ++L+S N ++W+EE + + Sbjct: 110 SGLRAHDPRVVLRTTVGGTYARWPSGAEAKVFGAHTPDDVERLRSGGNRCLVWLEEAAAM 169 Query: 130 KYEG 133 +Y G Sbjct: 170 RYLG 173 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 30.4 bits (67), Expect = 0.041, Method: Compositional matrix adjust. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 30/252 (11%) Query: 122 WVEECSEVKYEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDK 181 ++ E S E F E+ + R +L+ TNP ++W+ KD Sbjct: 130 YINEASLAHEEVFDEI--KSRCSGTGARILVDTNPDHPEHWL----LKD----------- 172 Query: 182 DLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKV 241 Y + T G+ H + DN F+ Y++++ S M + G + ++G V Sbjct: 173 --YIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGM-FYERNINGMW-VSGDGV 228 Query: 242 LPRFESAPHAEVMRMIGEIKGRPL--YKAGMDFGFEESFNALVRMVVDQKEQILYIYWEY 299 + + E E+ P+ Y AG+D+G+E + ++V + +I Sbjct: 229 V--YADFDLNENTIKADELDDIPIKEYFAGVDWGYEH-YGSIVLIGRGIDGNFYFIEEHA 285 Query: 300 YKRGITDD--VMLEDLKPHRREIRETIKADSAEPKTIEYMRRHGWAITKAKKFQGSRLQY 357 ++ DD V+ +D+ I D+A P+ I RRH A K + S ++ Sbjct: 286 HQFKFIDDWVVIAKDIVSRYGNI--NFYCDTARPEYITEFRRHRLRAINADKSKLSGVEE 343 Query: 358 TKKVRRFKKIIC 369 K+ + K++ Sbjct: 344 VAKLFKQNKLLV 355 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 30.4 bits (67), Expect = 0.041, Method: Compositional matrix adjust. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 30/252 (11%) Query: 122 WVEECSEVKYEGFKELLGRLRHPDLSTHMLLTTNPVSTQNWVYTHFFKDELNGRFVLDDK 181 ++ E S E F E+ + R +L+ TNP ++W+ KD Sbjct: 130 YINEASLAHEEVFDEI--KSRCSGTGARILVDTNPDHPEHWL----LKD----------- 172 Query: 182 DLYEQKTIVHNGVYYHHSTVQDNPFMPPSYRKNLDDLKNSDMDLWRIAWKGHFGLTGKKV 241 Y + T G+ H + DN F+ Y++++ S M + G + ++G V Sbjct: 173 --YIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGM-FYERNINGMW-VSGDGV 228 Query: 242 LPRFESAPHAEVMRMIGEIKGRPL--YKAGMDFGFEESFNALVRMVVDQKEQILYIYWEY 299 + + E E+ P+ Y AG+D+G+E + ++V + +I Sbjct: 229 V--YADFDLNENTIKADELDDIPIKEYFAGVDWGYEH-YGSIVLIGRGIDGNFYFIEEHA 285 Query: 300 YKRGITDD--VMLEDLKPHRREIRETIKADSAEPKTIEYMRRHGWAITKAKKFQGSRLQY 357 ++ DD V+ +D+ I D+A P+ I RRH A K + S ++ Sbjct: 286 HQFKFIDDWVVIAKDIVSRYGNI--NFYCDTARPEYITEFRRHRLRAINADKSKLSGVEE 343 Query: 358 TKKVRRFKKIIC 369 K+ + K++ Sbjct: 344 VAKLFKQNKLLV 355 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 25.8 bits (55), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 93 ITLPNGSEFIFRGMDNPQKLKSINNV---SIIWVEECSEVK 130 ITLPN S+ IF G ++ N+ I WV E++ Sbjct: 238 ITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIR 278 >gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:144 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552286;genbank:gi:160700611;genbank:Ge neID:5758815 Length = 556 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%) Query: 293 LYIYWEYYKRGITDDVMLEDLKPHRREIR 321 +Y YW+ G DD++L ++PH +E+R Sbjct: 360 VYTYWDL---GRNDDMVLWLMQPHGKELR 385 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 24.3 bits (51), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 383 LTYKVDKDGRVMEDEFNIDPHTLSAIWYGLDDY 415 L +D G DE +IDP +A+ + L+DY Sbjct: 437 LASILDMQGENRIDEIDIDPAGATALRHQLEDY 469 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 117 NVSIIWVEECSEVKYEGFKELLGRLRHPDLSTHML 151 N ++IW + E F+ + G + ++ H+L Sbjct: 92 NTTVIWTAHRTRTAAETFRSMQGLAKRDKIAPHIL 126 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 324 IKADSAEPKTIEYMRRHGWAITKAKKFQGSRLQYTKKVRRFKKIICSDQCKNTIMEL 380 I D + I +++ G+ I KA+ +++ + +KI + C NT+ E Sbjct: 324 IIIDPSAASFIAELKKRGYKIKKARNNVLEGIRFVGSMLGQEKIAVHESCVNTLKEF 380 >gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224036;genbank:gi:62327323;genbank:GeneID :5176819 Length = 423 Score = 23.1 bits (48), Expect = 6.0, Method: Compositional matrix adjust. Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 40/209 (19%) Query: 26 LVGGYGSSKSYNTAVKLLLKAISEKRKILVI--REVFDTHRESTFSLLTEVAYELGLGER 83 V G+G+ KS LL ++ L+ +D R + E + G+ R Sbjct: 24 FVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGI--R 81 Query: 84 ARITASPMKITLPNG--SEFIFRGMDNPQKLKSINNVSIIWVEECSEVKYEGFKELLGRL 141 + S I +G +F+ R +DNP ++ V YE F+ + L Sbjct: 82 YKYNKSDNIIYTSSGQFGDFVLRTLDNPARI----------------VGYESFRAKIDEL 125 Query: 142 R-----HPDLSTHMLLTTN--------PVSTQNWVYTHFFKDELNGRFVLDDKDLYEQKT 188 H + + + ++ N P++ + F RFV D + ++ Sbjct: 126 DTLNKDHAEHAWNKVIARNRQLPRTYRPITPKPANTVSVFTTPEGFRFVHDRWAVKKKP- 184 Query: 189 IVHNGVYYHHSTVQDNPFMPPSYRKNLDD 217 G ++ NPF+P Y ++L D Sbjct: 185 ----GYEMIQASTTSNPFLPEDYVQSLRD 209 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.137 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,454 Number of Sequences: 514 Number of extensions: 9808 Number of successful extensions: 213 Number of sequences better than 100.0: 54 Number of HSP's better than 100.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 55 length of query: 429 length of database: 206,069 effective HSP length: 74 effective length of query: 355 effective length of database: 168,033 effective search space: 59651715 effective search space used: 59651715 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)