Query lcl|NC_020879.1_cdsid_YP_007677865.1 [gene=Aes012_148] [protein=neck protein] [protein_id=YP_007677865.1] [location=89036..89959] Match_columns 307 No_of_seqs 32 out of 40 Neff 4.4 Searched_HMMs 1612 Date Thu Nov 7 19:25:32 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_148 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_148_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:101857 Length: 307 100.0 2E-165 1E-168 924.0 26.4 307 1-307 1-307 (307) 2 protein:vir:101153 Length: 307 100.0 2E-165 1E-168 924.0 26.4 307 1-307 1-307 (307) 3 protein:vir:100534 Length: 314 100.0 2E-160 1E-163 896.1 27.1 307 1-307 1-314 (314) 4 protein:vir:6889 Length: 308 # 100.0 1E-152 8E-156 853.4 25.9 302 1-307 1-308 (308) 5 protein:vir:107900 Length: 311 100.0 2E-152 1E-155 852.0 23.0 304 1-307 1-311 (311) 6 protein:vir:98189 Length: 307 100.0 2E-151 1E-154 847.1 25.8 303 1-307 1-307 (307) 7 protein:vir:106428 Length: 306 100.0 3E-150 2E-153 840.2 26.4 303 1-307 2-306 (306) 8 protein:vir:7198 Length: 309 # 100.0 2E-149 1E-152 836.1 23.3 302 1-307 1-309 (309) 9 protein:vir:6589 Length: 310 # 100.0 2E-148 1E-151 830.0 27.3 302 1-307 1-310 (310) 10 protein:vir:81013 Length: 310 100.0 2E-148 1E-151 830.0 27.3 302 1-307 1-310 (310) 11 protein:vir:103451 Length: 309 100.0 8E-149 5E-152 832.5 24.1 302 1-307 1-309 (309) 12 protein:vir:5657 Length: 307 # 100.0 2E-148 1E-151 830.3 25.3 304 1-307 1-307 (307) 13 protein:vir:104694 Length: 281 100.0 2E-127 1E-130 715.7 19.7 278 2-307 1-281 (281) 14 protein:vir:106985 Length: 276 100.0 5E-126 3E-129 707.7 21.1 272 2-307 1-276 (276) 15 protein:vir:104585 Length: 268 100.0 1E-120 9E-124 677.5 19.6 263 1-307 1-268 (268) 16 protein:vir:103004 Length: 268 100.0 1E-117 6E-121 662.1 15.4 260 1-307 1-268 (268) 17 protein:vir:104694 Length: 281 96.7 8.8E-05 5.4E-08 42.8 11.2 221 1-271 25-281 (281) 18 protein:vir:103004 Length: 268 93.4 0.00089 5.6E-07 37.3 6.4 221 1-276 27-268 (268) No 1 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=1.6e-165 Score=923.99 Aligned_cols=307 Identities=84% Similarity=1.380 Sum_probs=306.2 Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCceee Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFA 80 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~a 80 (307) |||+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+++|+|++++++||| T Consensus 1 m~~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~a 80 (307) T protein:vir:10 1 MSYTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVFA 80 (307) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecCc Q lcl|NC_020879. 81 VTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNST 160 (307) Q Consensus 81 vt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~~ 160 (307) ||+|+||++|+.++|+|+||||||+||++|++|+++++||++||||+||+++|||+++|+||.||+|||+|+||||||++ T Consensus 81 vt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~~ 160 (307) T protein:vir:10 81 VTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNSS 160 (307) T ss_pred hhhhhhhccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhhccceeccCCCCccccccc Q lcl|NC_020879. 161 TEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMSHGQIYAGQPNGMTKDNSY 240 (307) Q Consensus 161 t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~yr~~~P~~~~~~~~Y 240 (307) |++|+|++||++||+|++||++|||++++++++|+.++++|+++++|++|+.+++|+||+++++|||+++|+++++|++| T Consensus 161 t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~~Y 240 (307) T protein:vir:10 161 SEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDGAY 240 (307) T ss_pred ceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCcccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 241 NNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 241 Nn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|+|||+||| T Consensus 241 Nn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 241 NNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=1.6e-165 Score=923.99 Aligned_cols=307 Identities=84% Similarity=1.380 Sum_probs=306.2 Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCceee Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFA 80 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~a 80 (307) |||+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+++|+|++++++||| T Consensus 1 m~~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~a 80 (307) T protein:vir:10 1 MSYTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVFA 80 (307) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecCc Q lcl|NC_020879. 81 VTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNST 160 (307) Q Consensus 81 vt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~~ 160 (307) ||+|+||++|+.++|+|+||||||+||++|++|+++++||++||||+||+++|||+++|+||.||+|||+|+||||||++ T Consensus 81 vt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~~ 160 (307) T protein:vir:10 81 VTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNSS 160 (307) T ss_pred hhhhhhhccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhhccceeccCCCCccccccc Q lcl|NC_020879. 161 TEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMSHGQIYAGQPNGMTKDNSY 240 (307) Q Consensus 161 t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~yr~~~P~~~~~~~~Y 240 (307) |++|+|++||++||+|++||++|||++++++++|+.++++|+++++|++|+.+++|+||+++++|||+++|+++++|++| T Consensus 161 t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~~Y 240 (307) T protein:vir:10 161 SEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDGAY 240 (307) T ss_pred ceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCcccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 241 NNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 241 Nn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|+|||+||| T Consensus 241 Nn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 241 NNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=2e-160 Score=896.12 Aligned_cols=307 Identities=99% Similarity=1.505 Sum_probs=304.4 Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCceee Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFA 80 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~a 80 (307) |||+|+||+|||||||||||||||||||||+|||||||||||+||||||||++|+|++|++||||+++|||++++++|+| T Consensus 1 ma~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~g~~d~~~~~v~a 80 (314) T protein:vir:10 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFA 80 (314) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCEEeeCCcccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecCc Q lcl|NC_020879. 81 VTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNST 160 (307) Q Consensus 81 vt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~~ 160 (307) ||+|+||++|+.++++|+|||+||+||++|++|+++|+||++||||+||+++|||||+|+||.||+|||+|+|||||||+ T Consensus 81 vt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d~~~n~~ 160 (314) T protein:vir:10 81 VTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNST 160 (314) T ss_pred hhhhhhcccccccccCccccccccCceeeeecccccccccceeccccccchhHHHHHHHHHHHHHHhhhcccccccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceEEEeecccCCcEEEEEEEeccccchhhhh-------cccccceeeecccCccccccchhhcCchhhccceeccCCCC Q lcl|NC_020879. 161 TEMMRVAGKLQKGDLLVFEVYCKSYANVDSML-------SGTSAGYGFAMSDDDSVPSVPQKYANPNMSHGQIYAGQPNG 233 (307) Q Consensus 161 t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~yr~~~P~~ 233 (307) |+||+|++||+++|+|++||++|+|+++++++ .|..++++|++++|+++|++.++|+||+..+.++++++|++ T Consensus 161 ~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~~g~~~~ 240 (314) T protein:vir:10 161 TEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIYAGQSNG 240 (314) T ss_pred cceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcccccceeeeccccc Confidence 99999999999999999999999999999999 47889999999999999999999999999999999999999 Q ss_pred cccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 234 MTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) +.++++|||||||||||||+||||||||+|||||||||||||||+|||+||++|||+|||||+++|+|||++|| T Consensus 241 ~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~~pp~~mg 314 (314) T protein:vir:10 241 MSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 314 (314) T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCccccC Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=1.2e-152 Score=853.44 Aligned_cols=302 Identities=55% Similarity=1.012 Sum_probs=291.7 Q ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEe-hhccCCcceEcCCCce Q lcl|NC_020879. 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLT-EEQAKTGVISFAGGNV 78 (307) Q Consensus 1 m~-~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~t-ee~~~~Gv~~l~~~~v 78 (307) |+ |+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++| +|+.++|+|++++.+| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~k~g~f~~~d~~v 80 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDDEEKYRHGVFDMRGSNV 80 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeChhhhhccceeecCCccc Confidence 99 789999999999999999999999999999999999999999999999999999999997 5679999999999999 Q ss_pred eeeEeeeeeccccccccCcceeeccccceeeEeeccccc--ccc-ceeccccccchHHHHHHHHHHHHHHHhhcccccce Q lcl|NC_020879. 79 FAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-RWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDF 155 (307) Q Consensus 79 ~avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g--~~~-~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~ 155 (307) ||||+|+||++|+.++|||+|+|+||+||++|++|++++ ++| ++||||+||+++|||+|+|+||+||+|||+|.|+| T Consensus 81 ~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~~ 160 (308) T protein:vir:68 81 FAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPDF 160 (308) T ss_pred hhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhccccccc Confidence 999999999999999999999999999999999999986 334 78999999999999999999999999999999999 Q ss_pred eecCccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchh-hccceeccCCCCc Q lcl|NC_020879. 156 FFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNM-SHGQIYAGQPNGM 234 (307) Q Consensus 156 ~~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~yr~~~P~~~ 234 (307) |||++++|++|++||+.+|++++|+++|+|+++.+++++. ++|+++++|++|++..+|++|+. +++|||..+|+++ T Consensus 161 ~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~---~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~~~ 237 (308) T protein:vir:68 161 WFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNT---VGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPATK 237 (308) T ss_pred ccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccc---eeeeeecccccCccccccccchhhheeeeeccCCCcc Confidence 9999999999999999999999999999999999999776 57888999999999999999994 4699999999999 Q ss_pred ccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 235 TKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 235 ~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) + ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|+|++++|| T Consensus 238 ~--~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~pP~~~i~g 308 (308) T protein:vir:68 238 Q--GAYNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLDPPAGILVG 308 (308) T ss_pred c--cccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCceeeC Confidence 5 4999999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=2.2e-152 Score=852.01 Aligned_cols=304 Identities=57% Similarity=1.030 Sum_probs=288.9 Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEeh---hccCCcceEcCCCc Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTE---EQAKTGVISFAGGN 77 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~te---e~~~~Gv~~l~~~~ 77 (307) ||++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+ +++++|||++++.+ T Consensus 1 MA~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~~ 80 (311) T protein:vir:10 1 MASESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGRN 80 (311) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCcc Confidence 999999999999999999999999999999999999999999999999999999999999998 68899999999999 Q ss_pred eeeeEeeeeeccccccccCcceeeccccceeeEeeccc--cccccceeccccccchHHHHHHHHHHHHHHHhhcccccce Q lcl|NC_020879. 78 VFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGAS--IGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDF 155 (307) Q Consensus 78 v~avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~--~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~ 155 (307) |||||+|+||++|+..+++|+|||+||+||++|++|++ +++||++||||+||+++|||+|+|+||+||+|||+|+||| T Consensus 81 v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~d~ 160 (311) T protein:vir:10 81 IFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCNSFGPNAFGADLGYFTQLMQYRSMMQDLLVPLPDY 160 (311) T ss_pred hhHHHHhhccccccccCCCCcccccccCchhhhhhhhhccccccccccccccccchHHHHHHHHHHHHHHHHhhcccccc Confidence 99999999999999999999999999999999999965 5578999999999999999999999999999999999999 Q ss_pred eecCccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeeccc-CccccccchhhcCchhhccceecc-CCCC Q lcl|NC_020879. 156 FFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSD-DDSVPSVPQKYANPNMSHGQIYAG-QPNG 233 (307) Q Consensus 156 ~~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~yr~~-~P~~ 233 (307) |||++|++|+|+|||++||+|++||++|||++++.++ +..+++++++.. .+..|.+.+.|+||+++++||||+ +|++ T Consensus 161 ~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v-~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~dp~~ 239 (311) T protein:vir:10 161 WYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMV-GNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGEDLGL 239 (311) T ss_pred ccccccceEEEeeccccccEEEEEEeccccccchhhh-hhhhhhhcccccccccccccchhhcccccccccceeecCcch Confidence 9999999999999999999999999999999999999 555677766653 455566689999999999999996 8999 Q ss_pred cccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 234 MTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ++ ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++...|||++|| T Consensus 240 ~~--~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~~Pp~~liG 311 (311) T protein:vir:10 240 QD--GAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELDLLDPPTPILIG 311 (311) T ss_pred hh--hhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCchhccC Confidence 84 5999999999999999999999999999999999999999999999999999999999998888888899 No 6 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=1.7e-151 Score=847.14 Aligned_cols=303 Identities=53% Similarity=0.932 Sum_probs=287.2 Q ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCceee Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFA 80 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~a 80 (307) |++ +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++|||.+ |+|++.+++||| T Consensus 1 m~t--~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~-~~~~~~~~~v~a 77 (307) T protein:vir:98 1 MIT--NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPR-NVFDLSKEHIFA 77 (307) T ss_pred CCc--CCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccc-cceecCCchHhH Confidence 999 99999999999999999999999999999999999999999999999999999999999975 899999999999 Q ss_pred eEeeeeeccccccccCcceeeccccceeeEeecccccccc--ceeccccccchHHHHHHHHHHHHHHHhhcccccceeec Q lcl|NC_020879. 81 VTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQC--RWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFN 158 (307) Q Consensus 81 vt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~--~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n 158 (307) ||+|+||++|+.+||||+||||||+||++|++|+++|++| ++||||+||++||||+|+|+||+||+|||+|+|||||| T Consensus 78 VT~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~dy~yn 157 (307) T protein:vir:98 78 VTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) T ss_pred HHHHhhcCccceecccccccccccCcceeecCCcccccccccceecCccccchHHHHHHHHHHHHHHHHhhccccceeec Confidence 9999999999999999999999999999999999988654 88999999999999999999999999999999999999 Q ss_pred CccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCch-hhccceeccCCCCccc- Q lcl|NC_020879. 159 STTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPN-MSHGQIYAGQPNGMTK- 236 (307) Q Consensus 159 ~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~yr~~~P~~~~~- 236 (307) +++++++|++||++||+|++|+++|||+|+++++.+ .++|.++..+.+.-|++.++|+||| +.++||||++|+++++ T Consensus 158 ~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~-~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~~~~ 236 (307) T protein:vir:98 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGS-VAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGG 236 (307) T ss_pred CcccceeeeeccccCceEEEEEeecccccchHHhcc-cccceeecccccccccchhhccchhhhhhcceeecCCCCcccc Confidence 999999999999999999999999999999999965 3555555544444577899999998 7789999999999864 Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 237 DNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 237 ~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) +++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|+|||++|= T Consensus 237 t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 237 TSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 55999999999999999999999999999999999999999999999999999999999999999999977 No 7 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=3.1e-150 Score=840.23 Aligned_cols=303 Identities=43% Similarity=0.735 Sum_probs=291.3 Q ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCcee Q lcl|NC_020879. 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (307) Q Consensus 1 m~-~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~ 79 (307) |+ |+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+++|+|++++++|| T Consensus 2 Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~~d~~~~~v~ 81 (306) T protein:vir:10 2 MSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGYIDISAYPVF 81 (306) T ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCeEecCCccce Confidence 88 78999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecC Q lcl|NC_020879. 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNS 159 (307) Q Consensus 80 avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~ 159 (307) |||+|+||++|++++|+|+|+|+||++|+++|+|++. ++++||||+||+||+||+++||||+||+|||+|+||||||+ T Consensus 82 aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~--~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pDf~~n~ 159 (306) T protein:vir:10 82 AITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQ--GISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPDYWLDP 159 (306) T ss_pred eeeeeeccCcceeeeccccccccchhhhhhhhccccc--chhhccchhhhhhhhHHHHHHHHHHHHHHHhccccceeEcC Confidence 9999999999999999999999999999999999887 46789999999999999999999999999999999999999 Q ss_pred ccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhhccceeccC-CCCccccc Q lcl|NC_020879. 160 TTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMSHGQIYAGQ-PNGMTKDN 238 (307) Q Consensus 160 ~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~yr~~~-P~~~~~~~ 238 (307) +++|++|.+||+++|+|++||++|+|+++++++.+ .++++++. ++...|+..++|.|||+.+.+||+++ |+.+.+++ T Consensus 160 ~~~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~-~~g~g~~~-~~~~~~~~~~~~~np~~~l~~~~~g~~~~~~~~~~ 237 (306) T protein:vir:10 160 VNGVVQLTGNFRENDVIIMEVHIQNFVELEKSVRG-VAGAGIVA-GGPTSADNKDKWMNPYSRMPSNVAGRARSEFPDQG 237 (306) T ss_pred CcceEEEEEeecCCcEEEEEeecccccccchhhhc-cccccccc-CCccccchhhhhccchhhhccccccccCCCccccc Confidence 99999999999999999999999999999999954 46799885 55557888999999999999999999 45566788 Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 239 SYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 239 ~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|+|||++|| T Consensus 238 ~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~~~ppi~mg 306 (306) T protein:vir:10 238 VYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLEEPLPILMG 306 (306) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhccCCCccccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 8 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=1.8e-149 Score=836.06 Aligned_cols=302 Identities=59% Similarity=1.031 Sum_probs=288.9 Q ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEeh--hccCCcceEcCCCc Q lcl|NC_020879. 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTE--EQAKTGVISFAGGN 77 (307) Q Consensus 1 m~-~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~te--e~~~~Gv~~l~~~~ 77 (307) |+ |+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+ +|.++|||++++.+ T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcc Confidence 99 7899999999999999999999999999999999999999999999999999999999985 58999999999999 Q ss_pred eeeeEeeeeeccccccccCcceeeccccceeeEeeccccc--ccc-ceeccccccchHHHHHHHHHHHHHHHhhcccccc Q lcl|NC_020879. 78 VFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-RWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPD 154 (307) Q Consensus 78 v~avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g--~~~-~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~ 154 (307) |||||+|+||++|+.++++|+||||||+||++|++|.++| +|| ++|+||+||+|++||+++|+||+||+|||+|.|| T Consensus 81 v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd 160 (309) T protein:vir:71 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCC Confidence 9999999999999999999999999999999999997754 555 4789999999999999999999999999999999 Q ss_pred eeecCccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhh-ccceeccCCCC Q lcl|NC_020879. 155 FFFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMS-HGQIYAGQPNG 233 (307) Q Consensus 155 ~~~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~yr~~~P~~ 233 (307) ||||+++++|+|.+||+.+|++++|+++|+|+|+++++ |+.++++|++++|+++ +.+.|+||+.. .+|||+.+|++ T Consensus 161 ~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v-~~~~g~~~~~~~d~~~--~~~~y~~~~~~l~~~~r~~dp~~ 237 (309) T protein:vir:71 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV-GNTVGYGTVGPQDSWS--LSERYNNPDHNLVGRVVGQDPNV 237 (309) T ss_pred cccccccceEEEEEeeeecceEEEEEeeccccccchhh-hcchhhcccccccccc--ceehhcccchhhhcceeccCCcc Confidence 99999999999999999999999999999999999999 5668999999999855 58889999954 59999999999 Q ss_pred cccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 234 MTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ++. +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++++|++++|| T Consensus 238 ~~~--~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~~~pP~d~i~g 309 (309) T protein:vir:71 238 KQG--AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGILVG 309 (309) T ss_pred hhh--hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcceeC Confidence 954 999999999999999999999999999999999999999999999999999999999999999999999 No 9 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=2.3e-148 Score=830.03 Aligned_cols=302 Identities=57% Similarity=0.956 Sum_probs=287.4 Q ss_pred CCCC-CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCcee Q lcl|NC_020879. 1 MSYT-TNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (307) Q Consensus 1 m~~~-p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~ 79 (307) |+.+ |+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+++|+|++++++|| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~ 80 (310) T protein:vir:65 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVF 80 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCccee Confidence 8755 999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeEeeeeeccccccccCcceeeccccceeeEeeccccc---cccceeccccccchHHHHHHHHHHHHHHHhhccccccee Q lcl|NC_020879. 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG---GQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFF 156 (307) Q Consensus 80 avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g---~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~ 156 (307) |||+|+||++|+..||||+|+|+||+||++|++|++++ ++|++||||+||++|+||||+|+||.++++||+|+|||| T Consensus 81 avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~ 160 (310) T protein:vir:65 81 AVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYW 160 (310) T ss_pred eeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccc Confidence 99999999999999999999999999999999999887 456999999999999999999999999999999999999 Q ss_pred ecCccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhh----ccceeccCCC Q lcl|NC_020879. 157 FNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMS----HGQIYAGQPN 232 (307) Q Consensus 157 ~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~yr~~~P~ 232 (307) ||+++||++|.+||++||+|++||++|+|+++++++.+..++++++++++++++ .+.|+||++. ++|||..+|+ T Consensus 161 yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:65 161 YNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGI--SAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCcccc--ccccccchhhhceeeeecccCCCc Confidence 999999999999999999999999999999999999999999999999988665 6778888855 5777777775 Q ss_pred CcccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 233 GMTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 233 ~~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ++++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+.+.+|+|++|= T Consensus 239 ---~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 239 ---KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred ---cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 367999999999999999999999999999999999999999999999999999999999999999998866 No 10 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=2.3e-148 Score=830.03 Aligned_cols=302 Identities=57% Similarity=0.956 Sum_probs=287.4 Q ss_pred CCCC-CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCcee Q lcl|NC_020879. 1 MSYT-TNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (307) Q Consensus 1 m~~~-p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~ 79 (307) |+.+ |+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+++|+|++++++|| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~ 80 (310) T protein:vir:81 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVF 80 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCccee Confidence 8755 999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeEeeeeeccccccccCcceeeccccceeeEeeccccc---cccceeccccccchHHHHHHHHHHHHHHHhhccccccee Q lcl|NC_020879. 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG---GQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFF 156 (307) Q Consensus 80 avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g---~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~ 156 (307) |||+|+||++|+..||||+|+|+||+||++|++|++++ ++|++||||+||++|+||||+|+||.++++||+|+|||| T Consensus 81 avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~ 160 (310) T protein:vir:81 81 AVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYW 160 (310) T ss_pred eeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccc Confidence 99999999999999999999999999999999999887 456999999999999999999999999999999999999 Q ss_pred ecCccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhh----ccceeccCCC Q lcl|NC_020879. 157 FNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMS----HGQIYAGQPN 232 (307) Q Consensus 157 ~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~yr~~~P~ 232 (307) ||+++||++|.+||++||+|++||++|+|+++++++.+..++++++++++++++ .+.|+||++. ++|||..+|+ T Consensus 161 yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:81 161 YNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGI--SAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCcccc--ccccccchhhhceeeeecccCCCc Confidence 999999999999999999999999999999999999999999999999988665 6778888855 5777777775 Q ss_pred CcccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 233 GMTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 233 ~~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ++++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+.+.+|+|++|= T Consensus 239 ---~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 239 ---KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred ---cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 367999999999999999999999999999999999999999999999999999999999999999998866 No 11 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=8.1e-149 Score=832.47 Aligned_cols=302 Identities=58% Similarity=1.024 Sum_probs=288.8 Q ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEeh--hccCCcceEcCCCc Q lcl|NC_020879. 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTE--EQAKTGVISFAGGN 77 (307) Q Consensus 1 m~-~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~te--e~~~~Gv~~l~~~~ 77 (307) |+ |+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++++ ++.++|||++++.+ T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcc Confidence 99 7899999999999999999999999999999999999999999999999999999999984 58999999999999 Q ss_pred eeeeEeeeeeccccccccCcceeeccccceeeEeeccccc--ccc-ceeccccccchHHHHHHHHHHHHHHHhhcccccc Q lcl|NC_020879. 78 VFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-RWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPD 154 (307) Q Consensus 78 v~avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g--~~~-~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~ 154 (307) |||||+|+||++|+..+++|+|||+||+||++|++|+++| ++| ++|+||+||+||+||+++||||+||+|||+|.|+ T Consensus 81 v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd 160 (309) T protein:vir:10 81 VFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCC Confidence 9999999999999999999999999999999999997765 444 5789999999999999999999999999999999 Q ss_pred eeecCccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCch-hhccceeccCCCC Q lcl|NC_020879. 155 FFFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPN-MSHGQIYAGQPNG 233 (307) Q Consensus 155 ~~~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~yr~~~P~~ 233 (307) ||||+++++|+|.+||+++|++++|+++|+|+|+++++ |+.++++|++++|+++ +.+.|+||+ ++++|||+.+|++ T Consensus 161 ~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v-~~~~g~~~~~~~d~~~--~~~~~~~~~~~l~~~~r~~dp~~ 237 (309) T protein:vir:10 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV-GNTVGYGTVGPQDSWS--LSERYNNPDHNLVGRVVGQDPDV 237 (309) T ss_pred ceeccccceEEEEEeeecCceEEEEEecchhcccchhh-ccccccccccCccccc--ccccccccchhhhcceeccCCcc Confidence 99999999999999999999999999999999999999 5668999999999855 478899988 5569999999999 Q ss_pred cccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 234 MTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ++. +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.+||+++|| T Consensus 238 ~~~--~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~l~pP~~~i~G 309 (309) T protein:vir:10 238 KQG--AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) T ss_pred hhh--hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCcccccC Confidence 954 999999999999999999999999999999999999999999999999999999999998899999999 No 12 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=2.1e-148 Score=830.26 Aligned_cols=304 Identities=44% Similarity=0.742 Sum_probs=284.1 Q ss_pred CCCC-CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCcee Q lcl|NC_020879. 1 MSYT-TNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (307) Q Consensus 1 m~~~-p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~ 79 (307) |+.+ |+||+|||||||||||||||||||||+|||||||||||+||||||||++|+|++|++||||+++|||++++ +|| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~G~~d~~~-~v~ 79 (307) T protein:vir:56 1 MQAYNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQTGIIDLDI-PAT 79 (307) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccCCeEecCc-chh Confidence 8755 99999999999999999999999999999999999999999999999999999999999999999999977 799 Q ss_pred eeEeeeeeccccccccCcceeeccccceeeEeeccccccccceec-cccccchHHHHHHHHHHHHHHHhhcccccceeec Q lcl|NC_020879. 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYG-PNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFN 158 (307) Q Consensus 80 avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~-~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n 158 (307) |||+|+||+ ++..+|||+|||+||+|||+|++|++++++|.++. ++++|++||||||+||||+||+|+|+|+|||||| T Consensus 80 avt~Iirt~-~s~~t~dg~aty~w~tdfi~~~~gv~g~~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d~~yn 158 (307) T protein:vir:56 80 AITKILRAE-SSFFTMDGNATYSWFSDFLQGLAGGPGAGSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYDYWYN 158 (307) T ss_pred hhhhhhccC-cccccCCCccccCccccceecccccccccceeeecccccchhhhhHHHHHHHHHHHHHhhcccccceeec Confidence 999999999 99999999999999999999999999999986655 5566699999999999999999999999999999 Q ss_pred CccceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCccccccchhhcCchhhccceec-cCCCCcccc Q lcl|NC_020879. 159 STTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSVPQKYANPNMSHGQIYA-GQPNGMTKD 237 (307) Q Consensus 159 ~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~yr~-~~P~~~~~~ 237 (307) ++++||++++||+.||++++|+|+++|+++.+++.+ ..+++++..+..+-|+++++|+|||++++|||+ .+|+++++| T Consensus 159 ~~~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~-~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~t~~ 237 (307) T protein:vir:56 159 GVNKQLRINANLSAGELIVVEAFVPSALLVSESATG-IIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQFAEQ 237 (307) T ss_pred CcceeeeeeeeeccCCeEEEEeeccchhhhhhhhhh-hcceeeecCcccccCCchhhccCcceeeeccccccCCcccccc Confidence 999999999999999999999999999999999954 344544444444445669999999999999998 599999999 Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccccC Q lcl|NC_020879. 238 NSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 307 (307) Q Consensus 238 ~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~mg 307 (307) ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++...||+++|| T Consensus 238 ~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~P~~~liG 307 (307) T protein:vir:56 238 NAYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMSLTVPLGVFMG 307 (307) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCchhhcC Confidence 9999999999999999999999999999999999999999999999999999999999997777888899 No 13 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=1.6e-127 Score=715.67 Aligned_cols=278 Identities=24% Similarity=0.393 Sum_probs=262.6 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCceeee Q lcl|NC_020879. 2 SYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFAV 81 (307) Q Consensus 2 ~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~av 81 (307) -++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|||++++|+|+++++++||| T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~av 80 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTDGVGIVT 80 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecCcceeEE Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecCcc Q lcl|NC_020879. 82 TQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNSTT 161 (307) Q Consensus 82 t~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~~t 161 (307) |+|+||+++ |+|+||+|||+++.+..+...+.+.|+.+|++.+++++++|. ++||.+|+|+|+ T Consensus 81 t~i~~t~~~----~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~--~~yq~~lndly~----------- 143 (281) T protein:vir:10 81 TTATSTNIA----GYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFS--IKYQLFLNDLYN----------- 143 (281) T ss_pred Eeeeccccc----cccccccchhhcccceecCccceeeeeeccccccccCcceee--cchhhhhhhhcc----------- Confidence 999999977 899999999998888778778888999999999999999997 899999999974 Q ss_pred ceEEEeecccCCcEEEEEEEeccccchhhhhcccccceeeecccCcccccc--chhhcCchhhccceeccCCCCcccccc Q lcl|NC_020879. 162 EMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGTSAGYGFAMSDDDSVPSV--PQKYANPNMSHGQIYAGQPNGMTKDNS 239 (307) Q Consensus 162 ~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~yr~~~P~~~~~~~~ 239 (307) |.+++++.++| +++|+++.+++.+...+++|+++++|+|+++ ++.+.||+++++|||+++|++++ ++ T Consensus 144 --------~~~~~L~~y~m-~~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y~~~dP~~~~--~~ 212 (281) T protein:vir:10 144 --------FNSVELLQYSM-VKSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNFLVLDCYRALDPTSFT--QV 212 (281) T ss_pred --------CCchhhhhhhh-hhhhhhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCceEEeeeeccCCcccc--cc Confidence 34567888886 8889999999999999999999999999966 78899999999999999999985 59 Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccc-cC Q lcl|NC_020879. 240 YNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPII-MG 307 (307) Q Consensus 240 YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~-mg 307 (307) |||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|++||++ || T Consensus 213 YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 213 YNDPFLKLYLTALMKRQWGQNLIKFRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 999999999999999999999999999999999999999999999999999999999999988888 78 No 14 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=4.6e-126 Score=707.74 Aligned_cols=272 Identities=23% Similarity=0.364 Sum_probs=250.7 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCceeee Q lcl|NC_020879. 2 SYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFAV 81 (307) Q Consensus 2 ~~~p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~av 81 (307) -++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+.+|+ T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~~----------- 69 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRFT----------- 69 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhhh----------- Confidence 468999999999999999999999999999999999999999999999999999999999999987754 Q ss_pred EeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecCcc Q lcl|NC_020879. 82 TQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNSTT 161 (307) Q Consensus 82 t~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~~t 161 (307) +.+.||++|+..+|+|+++|+||+||++|++|+++ ++|+++|+|+||++++|| |+|+ ||..+ T Consensus 70 ~~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~-g~s~~~g~n~f~~~~q~f---------l~d~--------~~~~~ 131 (276) T protein:vir:10 70 SSDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFG-VSSNFLRNNLFGLSNQYY---------LMDL--------FSFST 131 (276) T ss_pred hhhhcccccceeeeeccCcceecCcchhhhhhhcc-cCccccCCccccccHHHH---------HHHH--------hcccc Confidence 45788999999999999999999999999999975 678999999999988887 5555 46689 Q ss_pred ceEEEeecccCCcEEEEEEEeccccchhhhhc-ccccceeeecccCcccccc--chhhcCchhhccceeccCCCCccccc Q lcl|NC_020879. 162 EMMRVAGKLQKGDLLVFEVYCKSYANVDSMLS-GTSAGYGFAMSDDDSVPSV--PQKYANPNMSHGQIYAGQPNGMTKDN 238 (307) Q Consensus 162 ~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~yr~~~P~~~~~~~ 238 (307) +||+|++||+.+|+++++.+.++ ++..+. |...+|+|+++++|+++++ .+.++||+++++|||++||++++ + T Consensus 132 ~ql~~~g~~~~~dy~~ve~~~~~---id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~dP~~~~--~ 206 (276) T protein:vir:10 132 GSAFSFGNFDLTNYYMIKQHFET---IDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCYRYLNPDDFT--Q 206 (276) T ss_pred cceeeccceeeeeEEEEEEEecc---cceeecCCceeEEeeeccCCccccccccccccCCHHHHhhcccccCCcccc--c Confidence 99999999988888888776554 555553 7778999999999999988 78899999999999999999984 6 Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccc-cC Q lcl|NC_020879. 239 SYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPII-MG 307 (307) Q Consensus 239 ~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~-mg 307 (307) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||+++|++||++ || T Consensus 207 ~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 207 VYDDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 9999999999999999999999999999999999999999999999999999999999999888887 78 No 15 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=1.5e-120 Score=677.51 Aligned_cols=263 Identities=24% Similarity=0.410 Sum_probs=238.5 Q ss_pred CCCC-CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCcee Q lcl|NC_020879. 1 MSYT-TNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (307) Q Consensus 1 m~~~-p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~ 79 (307) |+.+ |+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~-------------- 66 (268) T protein:vir:10 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAI-------------- 66 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHH-------------- Confidence 8755 9999999999999999999999999999999999999999999999999999987665544 Q ss_pred eeEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecC Q lcl|NC_020879. 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNS 159 (307) Q Consensus 80 avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~ 159 (307) ||+.++. +++||++++|+++||. ++||+||+ ++||+++|+||.++++||+|+|+||||+ T Consensus 67 ------rt~~~~~-t~~~t~~~~~~~nyi~-------------~p~~~~Gv-~~vf~~~~~~~~~~~nm~~~~~q~~lnd 125 (268) T protein:vir:10 67 ------KTQAKGF-TQEGSTPWYGQDNYVS-------------TPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLND 125 (268) T ss_pred ------hhccccc-cccccccccCCCccee-------------cCccccch-hhhhccccccccccchhhcccchhhccc Confidence 6776665 8899999999988884 89999998 8999999999999999999999999999 Q ss_pred ccceEEEeecccCCcEEEEEEEeccccchhhhhcc-cccceeeecccCcccccc--chhhcCchhhccceeccCCCCccc Q lcl|NC_020879. 160 TTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSG-TSAGYGFAMSDDDSVPSV--PQKYANPNMSHGQIYAGQPNGMTK 236 (307) Q Consensus 160 ~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~yr~~~P~~~~~ 236 (307) .+ +|++++++.++|..+++++++.++.+ ...+++|+++++|++++. ...+.+++++++|||..+|++++ T Consensus 126 ~~-------~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp~~~~- 197 (268) T protein:vir:10 126 IY-------SMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFT- 197 (268) T ss_pred cc-------cccceeEEEEEEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhhhhhhhhccCCcccc- Confidence 66 68999999999999999888888854 467899999999999864 23344446889999999999984 Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCc-cccC Q lcl|NC_020879. 237 DNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPP-IIMG 307 (307) Q Consensus 237 ~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~pp-i~mg 307 (307) ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|++|| ++|| T Consensus 198 -~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 198 -DMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 599999999999999999999999999999999999999999999999999999999999887777 5589 No 16 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=9.7e-118 Score=662.10 Aligned_cols=260 Identities=23% Similarity=0.375 Sum_probs=234.9 Q ss_pred CCCC-CCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceEcCCCcee Q lcl|NC_020879. 1 MSYT-TNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (307) Q Consensus 1 m~~~-p~sr~eLKdyilrrLGAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~l~~~~v~ 79 (307) |+.+ |+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||++. T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~------------- 67 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIK------------- 67 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHh------------- Confidence 8766 99999999999999999999999999999999999999999999999999999999999985 Q ss_pred eeEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccccceeecC Q lcl|NC_020879. 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNS 159 (307) Q Consensus 80 avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~~~~~~n~ 159 (307) +.|++++|+|+++|+|+++||. ++||++|+ +++|+++++|+.++++||+|.|+||+|+ T Consensus 68 --------~~g~~~t~~g~~~~~~~~~fi~-------------~pp~v~gv-~~vf~~~~~~~~~~~n~~~~~~q~~lnd 125 (268) T protein:vir:10 68 --------TAAQSTTQQGSTNWYENNNYVS-------------LPPGVLGV-NHVYTNIGASSVVPGNIFNIKYQIFLND 125 (268) T ss_pred --------hhhhhcccCcccccccccccee-------------cCCceeeh-hhhhhcccccccccccccccchhhhhcc Confidence 2468889999999999999995 68999999 6999999999999999999999999999 Q ss_pred ccceE--EEeecccCCcEEEEEEEeccccchhhhhcc--cccceeeecccCcccccc--chhhcCchhhccceeccCCCC Q lcl|NC_020879. 160 TTEMM--RVAGKLQKGDLLVFEVYCKSYANVDSMLSG--TSAGYGFAMSDDDSVPSV--PQKYANPNMSHGQIYAGQPNG 233 (307) Q Consensus 160 ~t~~l--~i~~nf~~~d~l~~~~~~k~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~yr~~~P~~ 233 (307) .+++. +|.++|..+| |+.+.+++++ ....++|+++++|+|++. .....++++.++|||..+|++ T Consensus 126 ~~~~~~g~il~y~~~~~----------~l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~dP~~ 195 (268) T protein:vir:10 126 IYAMTHGQILHYFMTSQ----------YLETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMRQDPDE 195 (268) T ss_pred hhhhhHHhhhhhhhccc----------eeehhhhhhcccCccceEEEeeeceeEEeeccCCcccchhhhhHhhcccCCch Confidence 99877 5666654444 4444444433 336689999999999977 455778889999999999999 Q ss_pred cccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHhccCCCCccc-cC Q lcl|NC_020879. 234 MTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPII-MG 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTlnG~~i~~eA~~E~e~L~eeL~~~~~~ppi~-mg 307 (307) ++ ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++|++||++ || T Consensus 196 ~~--~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 196 YT--GMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred hh--hhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCcceecC Confidence 84 69999999999999999999999999999999999999999999999999999999999988777755 89 No 17 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=96.69 E-value=8.8e-05 Score=42.82 Aligned_cols=221 Identities=12% Similarity=0.100 Sum_probs=97.3 Q ss_pred CCCCCCCHHHHHHHHHHhcC--------CceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceE Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRLG--------APIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVIS 72 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrLG--------APvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~ 72 (307) ---+..=-.+++|-+|..-| .--+.+.||+||+.+ .+..+ + ++.--+++. T Consensus 25 InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~-------------------g~~d~--~-~~~~~avt~ 82 (281) T protein:vir:10 25 INLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDR-------------------GRAKG--T-DGVGIVTTT 82 (281) T ss_pred EEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhc-------------------ceeee--c-CcceeEEEe Confidence 11112222234444443332 356789999999843 11111 1 111111111 Q ss_pred cCCCceeeeEeeeeeccccccccCcceeeccccceeeEeecccccccc------ceeccccccc--------hHHHHHHH Q lcl|NC_020879. 73 FAGGNVFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQC------RWYGPNAFGA--------DLGYFTQL 138 (307) Q Consensus 73 l~~~~v~avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~------~~~~~n~fg~--------~l~yf~~~ 138 (307) ... |.+.-.+.+...+-.-+ .|--.+++++|+++.+++.++ ...++++|+. +|.+|+++ T Consensus 83 i~~------t~~~~~G~at~~w~~~~-ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m~ 155 (281) T protein:vir:10 83 ATS------TNIAGYGTTTSSWYETS-NFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSMV 155 (281) T ss_pred eec------cccccccccccchhhcc-cceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhhh Confidence 111 11112222222222222 232366788888877665443 1233344444 45556689 Q ss_pred HHHHHHHHhhcccccceeecCccceEEEeecccCCcEEEEEEEeccccchhhhhc-ccccceeeecccCccccccchhhc Q lcl|NC_020879. 139 MSYRDMMGDMLSPLPDFFFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLS-GTSAGYGFAMSDDDSVPSVPQKYA 217 (307) Q Consensus 139 ~~y~~~l~d~~~p~~~~~~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 217 (307) +||+++++.++++.|.|+||...+ +|.+++..+ .+..+..+. -.......+..++ --++.|. T Consensus 156 ~qyl~~~d~v~n~~~~~~~n~~~d------------rL~~d~d~~-~~~~d~~~~~~~y~~~dP~~~~~----~YNnrWv 218 (281) T protein:vir:10 156 KSYLEDIDFLLTTDKQVRFNKRQD------------RLYLDIDWG-AESLDNFLVLDCYRALDPTSFTQ----VYNDPFL 218 (281) T ss_pred hhhhhhhHhhcCCCceEEEeeeCC------------eEEEEEecc-cccCCCceEEeeeeccCCccccc----ccchhHH Confidence 999999999999999999995544 444444322 112222221 0000011010000 0133344 Q ss_pred Cchhh----------cccee-ccCCCCcccccccCchHHHHHHHHHHHHHHHHHHHHhc--CCcCCC Q lcl|NC_020879. 218 NPNMS----------HGQIY-AGQPNGMTKDNSYNNRWVKDMATAFVKELNGQVLAKHQ--GMQLPG 271 (307) Q Consensus 218 ~p~~~----------~~~yr-~~~P~~~~~~~~YNn~WvKdyATALvK~~wGqnL~Kfq--G~qLPG 271 (307) +.|.. +.-|+ +-=|-..| =|.+=+-+=|.+.+.+.-=+-+.++. .+-+-| T Consensus 219 KdYaTAL~K~~wGq~L~K~qG~qLPGGvT----vnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 219 KLYLTALMKRQWGQNLIKFRGVKLPGGIE----LNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCcee----ecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 44321 11111 11133332 24455555666666666655555554 222223 No 18 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=93.43 E-value=0.00089 Score=37.30 Aligned_cols=221 Identities=17% Similarity=0.213 Sum_probs=110.0 Q ss_pred CCCCCCCHHHHHHHHHHhc--------CCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEEehhccCCcceE Q lcl|NC_020879. 1 MSYTTNNPLELKDAILRRL--------GAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVIS 72 (307) Q Consensus 1 m~~~p~sr~eLKdyilrrL--------GAPvi~IeVtd~Qi~d~Id~Alqlf~EyHydG~~k~yl~~k~tee~~~~Gv~~ 72 (307) ---+..=-.+++|-+|..- -.--+.++||++++..- +. -..+|. -.+ -..+.++. T Consensus 27 InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g-----~~---~t~~g~----~~~-----~~~~~fi~ 89 (268) T protein:vir:10 27 INVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAA-----QS---TTQQGS----TNW-----YENNNYVS 89 (268) T ss_pred EecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhh-----hh---cccCcc----ccc-----ccccccee Confidence 1111111223333333322 23456889999997311 00 011121 000 12344677 Q ss_pred cCCCceeeeEeeeeeccccccccCcceeeccccceeeEeeccccccccceeccccccchHHHHHHHHHHHHHHHhhcccc Q lcl|NC_020879. 73 FAGGNVFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPL 152 (307) Q Consensus 73 l~~~~v~avt~i~rt~~g~~~~~~g~at~~w~~d~i~~~~g~~~g~~~~~~~~n~fg~~l~yf~~~~~y~~~l~d~~~p~ 152 (307) +|++ |++|++|+ |++++..++.|+...+|...|+..+++.. +|.-|+|| |++|++.++ T Consensus 90 ~pp~-v~gv~~vf-~~~~~~~~~~~n~~~~~~q~~lnd~~~~~------------~g~il~y~--------~~~~~l~~~ 147 (268) T protein:vir:10 90 LPPG-VLGVNHVY-TNIGASSVVPGNIFNIKYQIFLNDIYAMT------------HGQILHYF--------MTSQYLETL 147 (268) T ss_pred cCCc-eeehhhhh-hcccccccccccccccchhhhhcchhhhh------------HHhhhhhh--------hccceeehh Confidence 7775 99999988 88999999999999999999888776652 45677887 455666554 Q ss_pred cceeecCccceEEEeecccCCcEEEEEEEeccccchhhhhc-ccccceeeecccCcccccc-chhhcCchhh-------- Q lcl|NC_020879. 153 PDFFFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLS-GTSAGYGFAMSDDDSVPSV-PQKYANPNMS-------- 222 (307) Q Consensus 153 ~~~~~n~~t~~l~i~~nf~~~d~l~~~~~~k~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~-------- 222 (307) + |+..+....++..|.+++ +|-...- .+-..+++.+. +........ ..-.+ ++.|.+.|.. T Consensus 148 ~--~~~~s~~~~~~~~~~~~~-rly~d~d-~~~~~~~~~~~i~~~~~~dP~-----~~~~~YNn~WvKdYatAL~K~~wG 218 (268) T protein:vir:10 148 D--WVTNSQANRRVKFNEHQA-RLYLDFD-WDTLQAGDFIMVDLTMRQDPD-----EYTGMYNDAWLKDYVEALFQQQWG 218 (268) T ss_pred h--hhhcccCccceEEEeeec-eeEEeec-cCCcccchhhhhHhhcccCCc-----hhhhhhhhhHHHHHHHHHHHHHHH Confidence 4 332233344454454444 2322221 11222233331 111111111 00011 3444444421 Q ss_pred --ccceeccC-CCCcccccccCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeec Q lcl|NC_020879. 223 --HGQIYAGQ-PNGMTKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTID 276 (307) Q Consensus 223 --~~~yr~~~-P~~~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvTln 276 (307) +.-|+-.. |-..| =|.+=+-+=|.+.+++.-=+-+.++. +|-|+-+- T Consensus 219 q~L~K~qG~qLPGGvT----lnG~~i~eeA~~E~e~L~eel~~~~~---~Pp~~liG 268 (268) T protein:vir:10 219 RNLSKYDGIQMLGGVT----LNGRQILEDASQFKKDLEENIRKEYE---LPPMDLIG 268 (268) T ss_pred HHHHHhcCccCCCcee----eCHHHHHHHHHHHHHHHHHHHHhhcC---CCcceecC Confidence 12222222 44443 35566777777777777766666666 45554444 Done!