BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_020866.1_cdsid_YP_007676411.1 [gene=RHVG_00032] [protein=hypothetical protein] [protein_id=YP_007676411.1] [location=15958..17655] (565 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|5606|lcl|protein:vir:107886 Length: 500 # NCBI annotation: gp... 358 e-100 gi|11818|lcl|protein:vir:79096 Length: 500 # NCBI annotation: gp... 356 e-100 gi|108|lcl|protein:vir:1985 Length: 551 # NCBI annotation: putat... 330 3e-92 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 104 3e-24 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 51 3e-08 gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: ter... 42 2e-05 gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: g... 39 2e-04 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 28 0.29 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 27 0.78 gi|7086|lcl|protein:vir:96154 Length: 187 # NCBI annotation: ORF... 27 0.90 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 26 1.0 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 26 1.1 gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: c... 25 1.8 gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: put... 25 1.9 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 25 2.0 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 25 2.0 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 25 2.0 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 25 2.0 gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: puta... 25 2.1 gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: maj... 25 2.4 gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: put... 25 2.7 gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: maj... 24 3.9 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 24 5.4 gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: Pa... 23 9.9 >gi|5606|lcl|protein:vir:107886 Length: 500 # NCBI annotation: gp28 # Family: family:all:460 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024701;genbank:gi:48696938;genbank:GeneID :2845974 Length = 500 Score = 358 bits (918), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/491 (45%), Positives = 302/491 (61%), Gaps = 39/491 (7%) Query: 31 PKVLLPYQAKAVSLLDTTSTRVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYIS 90 P VLLPYQ K + DT+ +V EKSRRVGL+WG AA + L A ++ GMD Y+ Sbjct: 12 PAVLLPYQQKWCA--DTSPVKV--CEKSRRVGLSWGEAADSALLAASQR---GMDVWYVG 64 Query: 91 YSQEMTREFIDACAMWARAFSVAAFDADEL--MFEDADPDDPGDTKHIQAFRIRFASGFE 148 Y+++M +EFI CA WA+ +S+AA + +E +F+D D D K I AF IRFASGF Sbjct: 65 YNKDMAQEFIRDCADWAKFYSLAADEIEETEEVFQDKDGD-----KSILAFVIRFASGFR 119 Query: 149 ILALSSAPRGLRGKQGMVIIDEAAFVDSLDELLKAALAFLMWGGQVVVCSTHNGTENPFN 208 + ALSS P LRGKQG VIIDEAAF + L ELLKAA+A LMWGGQV + STH+G +N FN Sbjct: 120 VTALSSRPSNLRGKQGRVIIDEAAFHEQLGELLKAAMALLMWGGQVHIISTHDGVDNAFN 179 Query: 209 QAIQDILAGRSPHQHMRIDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEGA 268 + + D+ +G+ P+ RI F A++DGLYQRICL G+ WT EGEA W ++I YG A Sbjct: 180 ELVTDVRSGKKPYSLHRITFADAVQDGLYQRICLRKGEAWTAEGEAKWVKDIRASYGADA 239 Query: 269 DEELFCVPTMGTGAWLPAPLIEARMTEDRPVLR------LELPANYMHMTKLQQ--AALL 320 +EEL CVP GAWL LIE+RM+ D PVLR E+ +++ + + A L Sbjct: 240 EEELDCVPKNSGGAWLSRALIESRMSADTPVLRWACKQGFEVLPDHIRAAECRDWLEATL 299 Query: 321 TPFMQQLADEAATLDPEPHYALGFDFGRVADLSTLSLLAIEQRLKRREALSIEMRNVPGH 380 P + L +A + + G DFGR DL+ L +Q L RR +E+RNVP Sbjct: 300 GPLLTALPVDARSYN-------GEDFGRTGDLTVHVPLIEQQNLVRRVPFIVELRNVPFR 352 Query: 381 EQKMIVGAVLEHVEGRLVGAAFDATGMGWTVAEDMGRKYGIKEAEDGPGLIWAIKFTEEW 440 +Q+ I +L+ + R G AFDA G G +AE ++YG I + +E W Sbjct: 353 QQEQIAFYLLDRLP-RFTGGAFDARGNGQYLAEVAMQRYGASR-------IQQVMLSESW 404 Query: 441 YRLHMPPLKAAFEDDQLALIRDDAHV-SDLRMVKLIRGIARVPPHR-EGETGKKRHGDYA 498 YR HMPP+KAAFED + + DA V +DLR V++I+G+ R+P R G+ KRHGD A Sbjct: 405 YREHMPPVKAAFEDGTIDGLPKDADVLADLRAVQVIKGVPRIPDVRATGQDDGKRHGDAA 464 Query: 499 IALALAHFASR 509 +A+ALA++ASR Sbjct: 465 VAVALAYYASR 475 >gi|11818|lcl|protein:vir:79096 Length: 500 # NCBI annotation: gp2 # Family: family:all:460 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111202;genbank:gi:134288795;genbank:Ge neID:4960770 Length = 500 Score = 356 bits (913), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/478 (45%), Positives = 290/478 (60%), Gaps = 39/478 (8%) Query: 31 PKVLLPYQAKAVSLLDTTSTRVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYIS 90 P VLLPYQ K + DT+ +V EKSRRVGL+WG AA + L A ++ GMD Y+ Sbjct: 12 PAVLLPYQQKWAA--DTSPVKV--CEKSRRVGLSWGEAADSALLAASQR---GMDVWYVG 64 Query: 91 YSQEMTREFIDACAMWARAFSVAAFDADEL--MFEDADPDDPGDTKHIQAFRIRFASGFE 148 Y+++M +EFI CA WA+ +S+AA + +E +F+D D D K I A+ IRFASGF Sbjct: 65 YNKDMAQEFIRDCADWAKFYSLAADEIEETEEVFQDKDGD-----KSILAYVIRFASGFR 119 Query: 149 ILALSSAPRGLRGKQGMVIIDEAAFVDSLDELLKAALAFLMWGGQVVVCSTHNGTENPFN 208 + ALSS P LRGKQG VIIDEAAF + L ELLKAA+A LMWGGQV + STH+G +N FN Sbjct: 120 VTALSSRPSNLRGKQGRVIIDEAAFHEQLGELLKAAMALLMWGGQVHIISTHDGVDNAFN 179 Query: 209 QAIQDILAGRSPHQHMRIDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEGA 268 + + D+ +G+ P+ RI F A++DGLYQRICL G+ WT EGEA W ++I YG A Sbjct: 180 ELVTDVRSGKKPYSLHRITFADAVQDGLYQRICLRKGEAWTAEGEAKWVKDIRASYGADA 239 Query: 269 DEELFCVPTMGTGAWLPAPLIEARMTEDRPVLR------LELPANYMHMTKLQQ--AALL 320 +EEL CVP GAWL LIE+RM+ D PVLR E+ +++ + + A L Sbjct: 240 EEELDCVPKNSGGAWLSRALIESRMSADTPVLRWACKQGFEVLPDHIRAAECRDWLDATL 299 Query: 321 TPFMQQLADEAATLDPEPHYALGFDFGRVADLSTLSLLAIEQRLKRREALSIEMRNVPGH 380 P + L +A + + G DFGR DL+ L +Q L RR +E+RNVP Sbjct: 300 GPLLAALPADARSYN-------GEDFGRTGDLTVHVPLIEQQNLIRRVPFIVELRNVPFR 352 Query: 381 EQKMIVGAVLEHVEGRLVGAAFDATGMGWTVAEDMGRKYGIKEAEDGPGLIWAIKFTEEW 440 +Q+ I +L+ + R G AFDA G G +AE ++YG I + +E W Sbjct: 353 QQEQIAFYLLDRLP-RFTGGAFDARGNGQYLAEIAMQRYGASR-------IQQVMLSESW 404 Query: 441 YRLHMPPLKAAFEDDQLALIRDDAHV-SDLRMVKLIRGIARVPPHR-EGETGKKRHGD 496 YR HMPP+KAAFED + + DA V +DLR V++I+G+ R+P R G+ KRHGD Sbjct: 405 YREHMPPVKAAFEDGTIDGLPKDADVLADLRAVQVIKGVPRIPDVRTTGQDDGKRHGD 462 >gi|108|lcl|protein:vir:1985 Length: 551 # NCBI annotation: putative portal protein # Family: family:all:460 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050632;genbank:gi:9633519;genbank:GeneID: 2636303 Length = 551 Score = 330 bits (846), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 210/511 (41%), Positives = 279/511 (54%), Gaps = 31/511 (6%) Query: 14 RREATEALPDVIAEVGRPK-----VLLPYQAKAVSLLDTTSTRVLFIEKSRRVGLTWGLA 68 R EA D++ ++G + V L YQ + +++ EKSRR GLTW A Sbjct: 20 REEAGLLGVDIVTDIGEAQPRNEPVFLGYQRRWFE----DESQICIAEKSRRTGLTWAEA 75 Query: 69 AYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAFS-VAAFDADELMFEDADP 127 V+ A + K+ GG + Y+ QEM E+I ACA++ARAF+ +A D E F D+D Sbjct: 76 GRNVMTAAKPKRRGGRNVFYVGSRQEMALEYIAACALFARAFNQLAKADVWEQTFWDSDK 135 Query: 128 DDPGDTKHIQAFRIRF-ASGFEILALSSAPRGLRGKQGMVIIDEAAFVDSLDELLKAALA 186 + I + IRF SGF+I ALSS P LRG QG V+IDEAAF ++LDELLKAA A Sbjct: 136 KE-----EILTYMIRFPNSGFKIQALSSRPSNLRGLQGDVVIDEAAFHEALDELLKAAFA 190 Query: 187 FLMWGGQVVVCSTHNGTENPFNQAIQDILAGRSPHQHMRIDFDQALRDGLYQRICLVTGQ 246 MWG V + STHNG +N FNQ IQD GR + RI D A+ DGLY+RIC VT Q Sbjct: 191 LNMWGASVRIISTHNGVDNLFNQYIQDAREGRKDYSVHRITLDDAIADGLYRRICYVTNQ 250 Query: 247 EWTPEGEAAWRQEIIDY--YGEGADEELFCVPTMGTGAWLPAPLIEARMT--EDRPVLRL 302 W+PE E AWR + E ADEE C+P GA+L LIEA MT D PVLR Sbjct: 251 PWSPEAEKAWRDGLYRNAPNKESADEEYGCIPKKSGGAYLSRVLIEAAMTPARDIPVLRF 310 Query: 303 ELPANYMHMTKLQQAALLTPFM-QQLADEAATLDPEPHYALGFDFGRVADLSTLSLLAIE 361 E P ++ +T + ++ + Q+L L P + LG DF R DL+ LAI Sbjct: 311 EAPDDFESLTPQMRHGIVQDWCEQELLPLLDALSPLNKHVLGEDFARRGDLTVFVPLAIT 370 Query: 362 QRLKRREALSIEMRNVPGHEQKMIVGAVLEHVEGRLVGAAFDATGMGWTVAEDMGRKYGI 421 L++RE +E+RNV +Q+ I+ +L + R GAAFDATG G +AE Y Sbjct: 371 PDLRKRECFRVELRNVTYDQQRQILLFILSRLP-RFTGAAFDATGNGGYLAEAARLIY-- 427 Query: 422 KEAEDGPGLIWAIKFTEEWYRLHMPPLKAAFEDDQLALIRDDAHVSDLRMVKLIRGIARV 481 GP +I I T WY+ MP LK FE + + R + DL +K+ +GI ++ Sbjct: 428 -----GPEMIDCISLTPAWYQEWMPKLKGEFEAQNITIARHQTTLDDLLHIKVDKGIPQI 482 Query: 482 PPHREGETGKK--RHGDYAIALALAHFASRM 510 R + G K RHGD+A+AL +A AS M Sbjct: 483 DKGRTKDEGGKGRRHGDFAVALCMAVRASYM 513 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 104 bits (260), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 135/505 (26%), Positives = 209/505 (41%), Gaps = 80/505 (15%) Query: 33 VLLPYQAKAVSLLDTTSTRVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYS 92 + LPYQ++ + T +R+ ++KSR++GL+W A A R E + +D S Sbjct: 17 IFLPYQSRWI----TDPSRLKLMQKSRQIGLSWSTAYAAGERTAAE--SARVDQWVSSRD 70 Query: 93 QEMTREFIDACAMWARAFSVAAFDADELMFEDADPDDPGDTKH-IQAFRIRFASGFEILA 151 R F++ C MWA + AA D E++ D K+ I A+ + FA+G I + Sbjct: 71 DLQARLFLEDCKMWAGIMNQAAKDLGEIVI---------DVKNKISAYVLEFANGRRIHS 121 Query: 152 LSSAPRGLRGKQGMVIIDEAAFVDSLDELLKAALAFLMWGGQVVVCSTHNGTENPFNQAI 211 +SS P GK+G I+DE A +L A + WGG + + STH G++N FNQ + Sbjct: 122 MSSNPDAQAGKRGGRILDEFALHPDPRKLWSIAYPGITWGGAMEIISTHRGSQNFFNQLV 181 Query: 212 QDILAGRSPHQHMRIDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQE--IIDYYGEG-A 268 ++I+ G +P +++ + L+D L Q Q + E E D+ G A Sbjct: 182 REIVEGGNP-KNISL-HTVTLQDALNQGFLFKLQQMLPADDEIQGMDEAQYFDFIRAGCA 239 Query: 269 DEELF-----CVPTMGTGAWLPAPLIEARMTEDRPVLRLELPANYMHMTKLQQAALLTPF 323 DEE F C P A+L LI + A Y QQ Sbjct: 240 DEESFQQEYMCNPADDDVAFLEYDLIAS--------------AEYPQTANWQQ------- 278 Query: 324 MQQLADEAATLDPEPHYAL-GFDFGRVADLSTLSLLAIEQRLKRREALSIEMRNVPGHEQ 382 PE G D GR DL+ L +L + + + ++N+ Q Sbjct: 279 ------------PEGGRLFAGVDIGRKKDLTVLWILELLGDVLYTRHVE-RLQNMRKSAQ 325 Query: 383 KMIVGAVLEHVEGRLVGAAFDATGMGWTVAEDMGRKYGIKEAEDGPGLIWAIKFTEEWYR 442 + I+ + E + DATG+G A+D ++G E A+ FT Sbjct: 326 EAILWPWFQRCERICI----DATGLGIGWADDAQDQFGEHRVE-------AVTFTPRVKE 374 Query: 443 LHMPPLKAAFEDDQLALIRDDAHVSDLRMV---KLIRGIARVPPHREGETGKKRHGDYAI 499 P++ A ED ++ + D + LR V G R R + H D Sbjct: 375 ALAYPIRGAMEDHKVRIPYDPKIRAALREVTKQTTAAGNIRFTAERTADG----HADEFW 430 Query: 500 ALALA-HFASRMRWVEYGYRAAPDR 523 AL LA H AS + + Y++A R Sbjct: 431 ALGLAIHAASGLVDMPIDYQSAGTR 455 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 51.2 bits (121), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 46/218 (21%) Query: 31 PKVLLPYQAKAVSLLDTTSTRVLFIEKSRRVGLTWGLAAYA-----------VLRAGREK 79 P L P Q K ++ T R + EK R++G+TW AYA VL A ++ Sbjct: 37 PFDLYPIQEKLINFYHTH--RYVITEKPRQMGVTWCAVAYALHQMIFNSNYKVLIAANKE 94 Query: 80 KAGGMDAMYISYSQEMTREFIDACA-MWARAFSVAAFDADELMFEDADPDDPGDTKHIQA 138 I ++ E F+ W + + Sbjct: 95 ATAKNVLERIKFAYEQLPRFLQIKKRTWNKTY---------------------------- 126 Query: 139 FRIRFASGFEILALSSAPRGLRGKQ-GMVIIDEAAFVDSLDELLKAALAFLMWGGQVVVC 197 I F++ A+SS R + ++I++EAAF+ +++EL + L GG+ +V Sbjct: 127 --IEFSNYSSARAVSSKSDSGRSESITLLIVEEAAFISNMEELWASVQQTLATGGKCIVN 184 Query: 198 STHNGTENPFNQAIQDILAGRSPHQHMRIDF-DQALRD 234 ST+NG N + + I+ G+S ++ I + D RD Sbjct: 185 STYNGVGNWYERTIRAAKEGKSEFKYFGIKWSDHPERD 222 >gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899601;genbank:gi:34419588;genbank:GeneID :2546011 Length = 600 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 19/151 (12%) Query: 140 RIRFASGFEILALSSAPRGLRGKQ-GMVIIDEAAFVDSLDELLKAALAFLMWG--GQVVV 196 I F +G ++ A +S +RGK M+ +DE AFV D+ KA + G +VV+ Sbjct: 211 NITFDNGCKLGAYASGSDAVRGKSFSMIYVDECAFVPGFDDFWKATFPVISSGEESKVVL 270 Query: 197 CSTHNGTE---NPFNQAIQDILAGRSPHQHMRIDFDQALRDGLYQRICLVTGQEWTPEGE 253 ST NG + +N A+Q I R ++ +DG + +GE Sbjct: 271 TSTPNGLNHYHDMWNAAVQGISTFEPYTTTWRAVQNRLYKDGEFD------------DGE 318 Query: 254 AAWRQEIIDYYGEGADEELFCVPTMGTGAWL 284 A R+ I + E +E C +GT L Sbjct: 319 AFKRETIGNTSREAFSQEHLC-NFLGTAGTL 348 >gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944105;genbank:gi:38640149;genbank:GeneID :2658038 Length = 633 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 140 RIRFASGFEILALSSAPRGLRGKQ-GMVIIDEAAFVDSLDELLKAALAFLMWGGQ--VVV 196 I +G I A +S+P +RG ++ +DE AF++ ++ KA L + G Q +++ Sbjct: 249 NIELENGCSIGAYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRQSRIIL 308 Query: 197 CSTHNGTENPFN 208 ST NG + ++ Sbjct: 309 TSTPNGINHWYD 320 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 28.1 bits (61), Expect = 0.29, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 23/44 (52%) Query: 143 FASGFEILALSSAPRGLRGKQGMVIIDEAAFVDSLDELLKAALA 186 ++G E+ LS+ + + G V IDE ++ DEL K A A Sbjct: 245 LSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASA 288 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 26.6 bits (57), Expect = 0.78, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 25/139 (17%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R I KSR++G TW A A++ A + + +++S S+ F +ARA Sbjct: 172 RTRNILKSRQIGATWYFAREALVDALDTDR----NQIFLSASKAQAHVFKQYITQFARA- 226 Query: 111 SVAAFDADELMFEDADPDDPGDTKHIQAFRIRFASGFEILALSSAPRGLRGKQGMVIIDE 170 AD + GD I SG + L + R + G DE Sbjct: 227 -------------AADIELTGDP-------IILPSGATLYFLGTNARTAQSYHGNFYFDE 266 Query: 171 AAFVDSLDELLKAALAFLM 189 +V EL K A M Sbjct: 267 YFWVPKFRELNKVASGMAM 285 >gi|7086|lcl|protein:vir:96154 Length: 187 # NCBI annotation: ORF024 # Family: family:all:913 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240085;genbank:gi:66395751;genbank:GeneID :5133137 Length = 187 Score = 26.6 bits (57), Expect = 0.90, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 217 GRSPHQHMRIDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEGADEE 271 GR P + F QA++D ++ L+ ++ T A + +++ YG D+E Sbjct: 62 GRIPGDKGQDQFKQAIKDRKQVKVWLIEKKKRTDGYHAVFGYAVVEEYGNSFDDE 116 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 25/134 (18%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R+ I KSR++G T+ + A+LRA + G + +++S S+ F + +AR Sbjct: 160 RIRDILKSRQIGATFYFSREALLRALKT----GHNQIFLSASKTQAYVFREYIIQFARL- 214 Query: 111 SVAAFDADELMFEDADPDDPGDTKHIQAFRIRFASGFEILALSSAPRGLRGKQGMVIIDE 170 D D GD I +G +++ L + + G + +DE Sbjct: 215 --------------VDVDLTGDPIVIG------NNGAKLIFLGTNSNTAQSHNGDLYVDE 254 Query: 171 AAFVDSLDELLKAA 184 ++ + +L K A Sbjct: 255 IFWIPNFQKLRKVA 268 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 25/139 (17%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R I KSR++G TW A A++ A + + +++S S+ F +AR Sbjct: 160 RTRNILKSRQIGATWYFAREALVDALDTDR----NQIFLSASKAQAHVFKQYITQFAR-- 213 Query: 111 SVAAFDADELMFEDADPDDPGDTKHIQAFRIRFASGFEILALSSAPRGLRGKQGMVIIDE 170 + AD + GD I SG + L + R + G DE Sbjct: 214 ------------DAADVELTGDP-------IILPSGATLYFLGTNARTAQSYHGNFYFDE 254 Query: 171 AAFVDSLDELLKAALAFLM 189 +V EL K A M Sbjct: 255 YFWVPKFRELNKVASGMAM 273 >gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: conserved phage-related protein # Family: family:all:4926 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398598;genbank:gi:80159854;genbank:GeneID :3772993 Length = 580 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 448 LKAAFEDDQLALIRDDAHVSDL 469 +KA+FE+ L L++D V DL Sbjct: 473 MKASFENGSLRLLKDSVEVDDL 494 >gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: putative capsid # Family: family:all:3249 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762524;genbank:gi:115304223;genbank:GeneI D:5141215 Length = 301 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 226 IDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEG 267 I DQAL++ + + G W+P G W+ + + Y +G Sbjct: 80 IQTDQALKEDILGQQRTANGLGWSPTGN--WKTKCVQYLIKG 119 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R+ I KSR++G T+ + A+LRA + G + +++S S+ F + +AR Sbjct: 160 RIRDILKSRQIGATFYFSREALLRALKT----GHNQIFLSASKTQAYVFREYIIAFARLV 215 Query: 111 SV 112 V Sbjct: 216 DV 217 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R+ I KSR++G T+ + A+LRA + G + +++S S+ F + +AR Sbjct: 160 RIRDILKSRQIGATFYFSREALLRALKT----GHNQIFLSASKTQAYVFREYIIAFARLV 215 Query: 111 SV 112 V Sbjct: 216 DV 217 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R+ I KSR++G T+ + A+LRA + G + +++S S+ F + +AR Sbjct: 160 RIRDILKSRQIGATFYFSREALLRALKT----GHNQIFLSASKTQAYVFREYIIAFARLV 215 Query: 111 SV 112 V Sbjct: 216 DV 217 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 25/139 (17%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R I KSR++G TW A A++ A + + +++S S+ F +AR Sbjct: 172 RTRNILKSRQIGATWYFAREALVDALDTDR----NQIFLSASKAQAHVFKQYITQFARG- 226 Query: 111 SVAAFDADELMFEDADPDDPGDTKHIQAFRIRFASGFEILALSSAPRGLRGKQGMVIIDE 170 AD + GD I SG + L + R + G DE Sbjct: 227 -------------AADIELTGDP-------IILPSGATLYFLGTNARTAQSYHGNFYFDE 266 Query: 171 AAFVDSLDELLKAALAFLM 189 +V EL K A M Sbjct: 267 YFWVPKFRELNKVASGMAM 285 >gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: putative major structural protein # Family: family:all:3249 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047126;genbank:gi:9630579;genbank:GeneID: 1261772 Length = 301 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 226 IDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEG 267 I DQAL++ + + G W+P G W+ + + Y +G Sbjct: 80 IQTDQALKEDILGQQRTANGLGWSPTGN--WKTKCVQYLIKG 119 >gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: major tail structural protein # Family: family:all:3249 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764325;genbank:gi:115315639;genbank:GeneI D:5176582 Length = 301 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 226 IDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEG 267 I DQAL++ + + G W+P G W+ + + Y +G Sbjct: 80 IQTDQALKEDMLGQQRTSNGLGWSPTGN--WKTKCVQYLLKG 119 >gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: putative structural protein # Family: family:all:3249 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764271;genbank:gi:115315584;genbank:GeneI D:5141538 Length = 301 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 226 IDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEG 267 I DQAL++ + + G W+P G W+ + + Y +G Sbjct: 80 IQTDQALKEDMLGQQRTSNGLGWSPTGN--WKTKCVQYLLKG 119 >gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: major structural protein # Family: family:all:3249 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044957;genbank:gi:9629664;genbank:GeneID: 1261264 Length = 301 Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 226 IDFDQALRDGLYQRICLVTGQEWTPEGEAAWRQEIIDYYGEG 267 I DQAL++ + + G W+P G W+ + + Y +G Sbjct: 80 IQTDQALKEDILGQQRTENGLGWSPTGN--WKTKCVQYLIKG 119 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 23.9 bits (50), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 25/134 (18%) Query: 51 RVLFIEKSRRVGLTWGLAAYAVLRAGREKKAGGMDAMYISYSQEMTREFIDACAMWARAF 110 R+ + KSR++G TW A A + A G + +++S S+ F +A+ Sbjct: 165 RIRNLLKSRQIGATWYFAREAFIDA----LTTGRNQIFLSASKAQAHVFKQYIIQFAKDA 220 Query: 111 SVAAFDADELMFEDADPDDPGDTKHIQAFRIRFASGFEILALSSAPRGLRGKQGMVIIDE 170 + D ++ + G + L + R + G + DE Sbjct: 221 AGIELKGDPMVLPN---------------------GATLYFLGTNARTAQSYHGNLYFDE 259 Query: 171 AAFVDSLDELLKAA 184 +V EL K A Sbjct: 260 YFWVPRFQELRKVA 273 >gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: PacB # Family: family:all:144 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006576;genbank:gi:46401730;genbank:GeneID :2777432 Length = 494 Score = 23.1 bits (48), Expect = 9.9, Method: Compositional matrix adjust. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 351 DLSTLSLLAIEQRLKRREALSIEMRNVPGHEQKMIVGAVLEHVEGRL---VGAAFDATGM 407 D S ++++ + + +R ++ M + + + + A D G+ Sbjct: 301 DKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNITIAIDGDGL 360 Query: 408 GWTVAEDMGRKYGI 421 G + A+ M +YGI Sbjct: 361 GKSTADLMYERYGI 374 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.136 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,466 Number of Sequences: 514 Number of extensions: 11926 Number of successful extensions: 77 Number of sequences better than 100.0: 27 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 28 length of query: 565 length of database: 206,069 effective HSP length: 76 effective length of query: 489 effective length of database: 167,005 effective search space: 81665445 effective search space used: 81665445 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)