BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_020081.1_cdsid_YP_007349220.1 [gene=G380_gp162] [protein=putative terminase, large subunit] [protein_id=YP_007349220.1] [location=40224..41369] (381 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|21538|lcl|protein:vir:63747 Length: 517 # NCBI annotation: gp... 431 e-122 gi|24920|lcl|protein:vir:80633 Length: 517 # NCBI annotation: gp... 431 e-122 gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: pu... 397 e-112 gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: OR... 370 e-104 gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hyp... 370 e-104 gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: h... 325 5e-91 gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: ter... 31 0.019 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 30 0.059 gi|12290|lcl|protein:vir:79539 Length: 699 # NCBI annotation: pu... 28 0.14 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 27 0.39 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 26 0.76 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 25 1.8 gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Str... 25 1.9 gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: maj... 25 2.1 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 25 2.1 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 25 2.2 gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 24 3.1 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 24 3.2 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 24 3.3 gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hyp... 23 6.0 gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: OR... 23 6.0 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 23 6.2 >gi|21538|lcl|protein:vir:63747 Length: 517 # NCBI annotation: gp5 # Family: family:all:1430 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547610;genbank:GeneID:3783489 Length = 517 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/380 (54%), Positives = 272/380 (71%), Gaps = 13/380 (3%) Query: 2 PDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEK----------NIECLDEKGVDVLAKT 51 P GIH L+ SDQH Y+HKC+ C H+N LDYE NI C++ +GVD LAKT Sbjct: 124 PGMGIHRLFENSDQHWYLHKCEKCNHWNQLDYEDYDSSSVEAGGNILCVNPQGVDTLAKT 183 Query: 52 VKDGSFRFICSKCGTSLDRWYNGSWVATYPSRTEDGGGTRGYLITQMNAVWISADELKRK 111 V +GSF+F+C KCG LDRWYNG WVA +P RT++G G RGY+I+QMNAVWISAD+LKRK Sbjct: 184 VVEGSFQFVCKKCGAPLDRWYNGEWVAKHPDRTKNGDGIRGYMISQMNAVWISADDLKRK 243 Query: 112 ELKAKSKQHFYNYVLGHPYQDVALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQ 171 EL + SKQ F+NY LG+P++D LAV +DI++N P ++ P RG Y++ISVG+DWG Sbjct: 244 ELNSLSKQAFFNYTLGYPFEDAKLAVYSEDIIENPSPRVKVPMHSRGDYKYISVGIDWGN 303 Query: 172 HHWITVRGFREDTKQIDLIRAFSVERSRGVANIEADLENIINQLVPYNPDIICADIGDNG 231 HW++V G E +IDLIR FSVE+SRGV NIE+DL+ II ++ YNPD+I AD+GD+G Sbjct: 304 THWVSVHGMTE-RGEIDLIRLFSVEKSRGVGNIESDLDKIILEVSMYNPDMIVADVGDSG 362 Query: 232 NYVDKLTDYFGAGKVYGVKVNPNPRSTGQIKPVWQDTRGMVTVDKLTQNKLHIADMKMGR 291 NYVDKL +FG +V+G +P+STGQ+KP W + +VTVDKL QNK +I +MK + Sbjct: 363 NYVDKLVKHFGEDRVFGCIYKSSPKSTGQLKPQWNEAGNVVTVDKLMQNKRYIIEMKTKK 422 Query: 292 LGFYR-KDRDLELYALHWRNVVIRDEEDEKTGQVYQIITNRGDDHYAQSSVYSMVGMEHV 350 + FY D L+L HWRNVVI+DEEDEK G YQ+I RGDDH AQ+SVYS +G++ + Sbjct: 423 VNFYSFIDPMLKLLVDHWRNVVIQDEEDEKDGTFYQVIGRRGDDHLAQASVYSFIGLDRL 482 Query: 351 LEPYIVGTEENAFGFTTVTA 370 + Y+ G++ F T VT+ Sbjct: 483 ADMYLRGSKYE-FNSTFVTS 501 >gi|24920|lcl|protein:vir:80633 Length: 517 # NCBI annotation: gp14 # Family: family:all:1430 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468454;genbank:gi:157325029;genbank:Ge neID:5601603 Length = 517 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/380 (54%), Positives = 272/380 (71%), Gaps = 13/380 (3%) Query: 2 PDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEK----------NIECLDEKGVDVLAKT 51 P GIH L+ SDQH Y+HKC+ C H+N LDYE NI C++ +GVD LAKT Sbjct: 124 PGMGIHRLFENSDQHWYLHKCEKCNHWNQLDYEDYDSSSVEAGGNILCVNPQGVDTLAKT 183 Query: 52 VKDGSFRFICSKCGTSLDRWYNGSWVATYPSRTEDGGGTRGYLITQMNAVWISADELKRK 111 V +GSF+F+C KCG LDRWYNG WVA +P RT++G G RGY+I+QMNAVWISAD+LKRK Sbjct: 184 VVEGSFQFVCKKCGAPLDRWYNGEWVAKHPDRTKNGDGIRGYMISQMNAVWISADDLKRK 243 Query: 112 ELKAKSKQHFYNYVLGHPYQDVALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQ 171 EL + SKQ F+NY LG+P++D LAV +DI++N P ++ P RG Y++ISVG+DWG Sbjct: 244 ELNSLSKQAFFNYTLGYPFEDAKLAVYSEDIIENPSPRVKVPMHSRGDYKYISVGIDWGN 303 Query: 172 HHWITVRGFREDTKQIDLIRAFSVERSRGVANIEADLENIINQLVPYNPDIICADIGDNG 231 HW++V G E +IDLIR FSVE+SRGV NIE+DL+ II ++ YNPD+I AD+GD+G Sbjct: 304 THWVSVHGMTE-RGEIDLIRLFSVEKSRGVGNIESDLDKIILEVSMYNPDMIVADVGDSG 362 Query: 232 NYVDKLTDYFGAGKVYGVKVNPNPRSTGQIKPVWQDTRGMVTVDKLTQNKLHIADMKMGR 291 NYVDKL +FG +V+G +P+STGQ+KP W + +VTVDKL QNK +I +MK + Sbjct: 363 NYVDKLVKHFGEDRVFGCIYKSSPKSTGQLKPQWNEAGNVVTVDKLMQNKRYIIEMKTKK 422 Query: 292 LGFYR-KDRDLELYALHWRNVVIRDEEDEKTGQVYQIITNRGDDHYAQSSVYSMVGMEHV 350 + FY D L+L HWRNVVI+DEEDEK G YQ+I RGDDH AQ+SVYS +G++ + Sbjct: 423 VNFYSFIDPMLKLLVDHWRNVVIQDEEDEKDGTFYQVIGRRGDDHLAQASVYSFIGLDRL 482 Query: 351 LEPYIVGTEENAFGFTTVTA 370 + Y+ G++ F T VT+ Sbjct: 483 ADMYLRGSKYE-FNSTFVTS 501 >gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: putative large terminase # Family: family:all:1430 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504114;genbank:gi:158079301;genbank:Ge neID:5666404 Length = 501 Score = 397 bits (1019), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/396 (49%), Positives = 263/396 (66%), Gaps = 20/396 (5%) Query: 2 PDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEK-----------NIECLDEKGVDVLAK 50 PD GIH L+ SDQH Y+HKC+ C +YN + Y+ NI C++ KGVDV+AK Sbjct: 106 PDMGIHGLFKGSDQHWYLHKCEKCNYYNEMSYDAYTPEAPVESRGNILCVNPKGVDVVAK 165 Query: 51 TVKDGSFRFICSKCGTSLDRWYNGSWVATYPSRTEDGGGTRGYLITQMNAVWISADELKR 110 TV DGSF+F+C KCG LDRWYNG WV YP RT++G GTRGY+I+QMNAVW++AD+LK Sbjct: 166 TVVDGSFQFVCQKCGEPLDRWYNGVWVPKYPDRTKNGLGTRGYMISQMNAVWVTADQLKT 225 Query: 111 KELKAKSKQHFYNYVLGHPYQDVALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWG 170 KEL++ SKQ FYNY LG+PY D+ L V + D+ + R YL P DRG Y+FISVG+DWG Sbjct: 226 KELQSLSKQAFYNYTLGYPYADLKLTVNDSDVDSHKRNYLVEPAKDRGDYKFISVGIDWG 285 Query: 171 QHHWITVRGFREDTKQIDLIRAFSVERSRGV--ANIEADLENIINQLVPYNPDIICADIG 228 HW+++ G + + +DLI+ FSV +S + I+ D+++I QL PYNPDII AD+G Sbjct: 286 NRHWVSIHGVKTNG-TVDLIKLFSVGKSNPLDPNAIDVDIQSIKLQLAPYNPDIIVADVG 344 Query: 229 DNGNYVDKLTDYFGAGKVYGVKVNPNPRSTGQIKPVWQDTRGMVTVDKLTQNKLHIADMK 288 D+G+ V KL +G +V+G P+STG + P W V+ DKL QNK +I MK Sbjct: 345 DSGDKVAKLMQIYGKERVFGCVYPSTPKSTGNLVPTWSPQANKVSADKLMQNKRYINKMK 404 Query: 289 MGRLGFYRK-DRDLELYALHWRNVVIRDEEDEKTGQVY-QIITNRGDDHYAQSSVYSMVG 346 G +G+Y K D +L LY HW+NVVIRD EDEKT + QII +GDDHY+Q+SVYSM+G Sbjct: 405 EGEIGYYSKPDTELNLYKEHWKNVVIRDIEDEKTSTGFRQIIGRKGDDHYSQASVYSMLG 464 Query: 347 MEHVLEPYIVGTEENAFG---FTTVTAPQSTDIYAR 379 E+++ + G +E F +T AP DI+ Sbjct: 465 YEYLMNVF-TGVKEYGFDSDWVSTQLAPTKPDIFTE 499 >gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: ORF010 # Family: family:all:1430 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240892;genbank:gi:66394959;genbank:GeneID :5132488 Length = 605 Score = 370 bits (950), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/381 (48%), Positives = 248/381 (65%), Gaps = 13/381 (3%) Query: 1 MPDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEK----------NIECLDEKGVDVLAK 50 +P GIH LY QSDQ Y H+C C + N + Y N+ C++ +GVD AK Sbjct: 213 VPGMGIHKLYQQSDQWYYGHRCQHCDYLNEMSYNDYNPDNLEESGNMLCVNPEGVDEQAK 272 Query: 51 TVKDGSFRFICSKCGTSLDRWYNGSWVATYPSRTEDGGGTRGYLITQMNAVWISADELKR 110 TV++GS++F+C KCG LDRWYNG W YP RT+ G RGYLITQMNAVWISADELK Sbjct: 273 TVQNGSYQFVCQKCGKPLDRWYNGEWHCKYPERTKGNKGVRGYLITQMNAVWISADELKE 332 Query: 111 KELKAKSKQHFYNYVLGHPYQDVALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWG 170 KE+ +SKQ FYNY+LG+P++DV L V E+D+ N P E R +Y I++G+DWG Sbjct: 333 KEMNTESKQAFYNYILGYPFEDVKLRVNEEDVYGNKSPIAETQLMKRDRYSHIAIGIDWG 392 Query: 171 QHHWITVRGFREDTKQIDLIRAFSVERSRGVANIEADLENIINQLVPYNPDIICADIGDN 230 HWITV G + K +DLIR FSV++ +EADLE II ++ Y+PDII AD GD+ Sbjct: 393 NTHWITVHGMLPNGK-VDLIRLFSVKKMTRPDLVEADLEKIIWEISKYDPDIIIADNGDS 451 Query: 231 GNYVDKLTDYFGAGKVYGVKVNPNPRSTGQIKPVWQDTRGMVTVDKLTQNKLHIADMKMG 290 GN V KL ++FG KV+G +P+STGQ++P + + VTVDKL QNK ++ +K Sbjct: 452 GNNVLKLINHFGKDKVFGCTYKSSPKSTGQLRPEFNENNNRVTVDKLMQNKRYVQALKTK 511 Query: 291 RLGFYRK-DRDLELYALHWRNVVIRDEEDEKTGQVYQIITNRGDDHYAQSSVYSMVGMEH 349 + Y D DL+ + HW+NVVI DEEDEKTG++YQ+I +GDDHYAQ+SVY+ +G+ Sbjct: 512 DISVYSTVDDDLKTFLKHWQNVVIMDEEDEKTGEMYQVIKRKGDDHYAQASVYAYIGLTR 571 Query: 350 VLEPYIVGTEENAFGFTTVTA 370 + E G +FG T V+ Sbjct: 572 IKELLKEGN-GTSFGSTFVST 591 >gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024465;genbank:gi:48696425;genbank:GeneID :2948061 Length = 605 Score = 370 bits (950), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/381 (48%), Positives = 248/381 (65%), Gaps = 13/381 (3%) Query: 1 MPDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEK----------NIECLDEKGVDVLAK 50 +P GIH LY QSDQ Y H+C C + N + Y N+ C++ +GVD AK Sbjct: 213 VPGMGIHKLYQQSDQWYYGHRCQHCDYLNEMSYNDYNPDNLEESGNMLCVNPEGVDEQAK 272 Query: 51 TVKDGSFRFICSKCGTSLDRWYNGSWVATYPSRTEDGGGTRGYLITQMNAVWISADELKR 110 TV++GS++F+C KCG LDRWYNG W YP RT+ G RGYLITQMNAVWISADELK Sbjct: 273 TVQNGSYQFVCQKCGKPLDRWYNGEWHCKYPERTKGNKGVRGYLITQMNAVWISADELKE 332 Query: 111 KELKAKSKQHFYNYVLGHPYQDVALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWG 170 KE+ +SKQ FYNY+LG+P++DV L V E+D+ N P E R +Y I++G+DWG Sbjct: 333 KEMNTESKQAFYNYILGYPFEDVKLRVNEEDVYGNKSPIAETQLMKRDRYSHIAIGIDWG 392 Query: 171 QHHWITVRGFREDTKQIDLIRAFSVERSRGVANIEADLENIINQLVPYNPDIICADIGDN 230 HWITV G + K +DLIR FSV++ +EADLE II ++ Y+PDII AD GD+ Sbjct: 393 NTHWITVHGMLPNGK-VDLIRLFSVKKMTRPDLVEADLEKIIWEISKYDPDIIIADNGDS 451 Query: 231 GNYVDKLTDYFGAGKVYGVKVNPNPRSTGQIKPVWQDTRGMVTVDKLTQNKLHIADMKMG 290 GN V KL ++FG KV+G +P+STGQ++P + + VTVDKL QNK ++ +K Sbjct: 452 GNNVLKLINHFGKDKVFGCTYKSSPKSTGQLRPEFNENNNRVTVDKLMQNKRYVQALKTK 511 Query: 291 RLGFYRK-DRDLELYALHWRNVVIRDEEDEKTGQVYQIITNRGDDHYAQSSVYSMVGMEH 349 + Y D DL+ + HW+NVVI DEEDEKTG++YQ+I +GDDHYAQ+SVY+ +G+ Sbjct: 512 DISVYSTVDDDLKTFLKHWQNVVIMDEEDEKTGEMYQVIKRKGDDHYAQASVYAYIGLTR 571 Query: 350 VLEPYIVGTEENAFGFTTVTA 370 + E G +FG T V+ Sbjct: 572 IKELLKEGN-GTSFGSTFVST 591 >gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164748;genbank:gi:56693161;genbank:GeneID :3197442 Length = 488 Score = 325 bits (834), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 171/382 (44%), Positives = 239/382 (62%), Gaps = 13/382 (3%) Query: 2 PDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEKNIECLDEKGVDVLAKTVKDGSFRFIC 61 P+ GI Y +SDQ ++V++C CG LDYEKNI+ +++ G+D++ K + +G+++++C Sbjct: 94 PNMGIDLKYAESDQRKWVYRCQHCGLVQQLDYEKNIKLINKDGIDLIGKVIDEGTYQYVC 153 Query: 62 SKCGTSLDRWYNGSWVATYPSRTEDGGGTRGYLITQMNAVWISADELKRKELKAKSKQHF 121 KCG +DRWY+G W T P G GY I+QM+AVW+SA ++K+KEL+A SKQ F Sbjct: 154 RKCGKPIDRWYSGFWDITAPR----SGRAHGYEISQMDAVWVSASQMKQKELEAPSKQFF 209 Query: 122 YNYVLGHPYQDVALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQH-HWITVRGF 180 YNY LG P+QD + + E+D+ ++I + + R YR ++VG+DWGQH H + V G Sbjct: 210 YNYSLGRPFQDTSNTLFEQDVTNHINSSVSRMEM-REDYRLVTVGIDWGQHQHSVVVTGM 268 Query: 181 REDTKQIDLIRAFSVERSRGVANIEADLENIINQLVPYNPDIICADIGDNGNYVDKLTDY 240 + + + +DLI V+RS GV NIE DL I+N L P+ PD+I ADIG NGNY D+LT Sbjct: 269 KANGR-VDLIGLKRVDRSEGVENIERDLYQIVNYLRPFEPDLILADIGYNGNYNDRLTQV 327 Query: 241 FGAGKVYGVKVNPNPRSTGQIKPVWQDTRGMVTVDKLTQNKLHIADMKMGRLGFYRK-DR 299 FG VYGVKV + +S G + D VT+DKLTQN + I +K G + FY D Sbjct: 328 FGKEVVYGVKVR-SAKSNGDYNAHFNDGVSTVTIDKLTQNLIAINSIKAGDINFYNPYDT 386 Query: 300 DLELYALHWRNVVIRDEEDEKTGQVYQIITNRGDDHYAQSSVYSMVGMEHVLEPYIVGTE 359 DL+LYA HW NVVIR EE + V +IT +G DHYAQS VYS+VGM +++ Sbjct: 387 DLQLYAKHWGNVVIRQEESKDGKSVETVITRKGPDHYAQSFVYSLVGMRRLIDEL----R 442 Query: 360 ENAFGFTTVTAPQSTDIYARGY 381 EN +TAP D + Y Sbjct: 443 ENQQNSPLMTAPLEIDSSSNPY 464 >gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: terminase large subunit TerL # Family: family:all:140 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918997;genbank:gi:34610172;genbank:gi:912 14212;genbank:GeneID:2559603 Length = 677 Score = 31.2 bits (69), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 59/158 (37%), Gaps = 40/158 (25%) Query: 2 PDYGIHALYTQSDQHEYVHKCDSCGHYNHLDYEKNIECL--DEKGVDV-LAKTVKDGSFR 58 P GI LY + D+ KC CG + +E + L D+ G V A TV R Sbjct: 222 PCKGILGLYNRGDRRRRYWKCPHCGDW----FEPTFKLLKWDDCGDAVSCADTV-----R 272 Query: 59 FICSKCG--------TSLDRWYNGSWVATYPSRTEDG---GGTRGYLITQ--MNAV---- 101 CG LD W G W+ S T D G R I MN V Sbjct: 273 MEAPCCGGRIEADQRNDLDLW--GVWLKDGESMTADDKRVGTPRRSRIASFWMNGVVAAF 330 Query: 102 ---------WISADELKRKELKAKSKQHFYNYVLGHPY 130 +I+A+E + +S + FYN LG PY Sbjct: 331 ISWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEPY 368 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 29.6 bits (65), Expect = 0.059, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Query: 125 VLGHPYQDVALAVQEKD----IMDNIRPYLEGPKFDRGQYRFISVGVD-WGQHHWITVRG 179 +L + + A V+ +D ++++IR ++ P F ++ I+V + W + HW+ Sbjct: 129 LLSWLWLEEAYQVENQDKFETLVESIRGSIDAPDF----FKQITVTFNPWSERHWLKSAF 184 Query: 180 FREDTKQIDLI 190 F EDT++ D+ Sbjct: 185 FDEDTRKKDVF 195 >gi|12290|lcl|protein:vir:79539 Length: 699 # NCBI annotation: putative large terminase subunit # Family: family:all:140 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272515;genbank:gi:148609384;genbank:Ge neID:5204375 Length = 699 Score = 28.5 bits (62), Expect = 0.14, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 2 PDYGIHALYTQSDQHEYVHKCDSCGHY 28 P GI +LY + D+ + C CG Y Sbjct: 228 PTTGILSLYNRGDRRRWYWPCPHCGEY 254 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 26.9 bits (58), Expect = 0.39, Method: Compositional matrix adjust. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 208 LENIINQLVPYNPDIICADIGDNGNYVDKLTDYFGA 243 + N+I + +P + D++ GDN + +D T F A Sbjct: 511 ISNVIGKFIPGSDDLVRPTKGDNQSKIDGATALFNA 546 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 26.2 bits (56), Expect = 0.76, Method: Compositional matrix adjust. Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 5/45 (11%) Query: 142 IMDNIRPYLEGPKFDRGQYRFISVGVD-WGQHHWITVRGFREDTK 185 ++++IR + P+F ++ I+V + W + HW+ F E+TK Sbjct: 146 VVESIRGSYDSPEF----FKQITVTFNPWSERHWLKPTFFDEETK 186 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Query: 9 LYTQSDQHEYVHKCDSCGHYNHLDYEKNIECLDEKGVDVLAKTVKDGSFRFICSKCGTSL 68 Y S + + V++ S G N ++ KN+ G++ +A+ +++G F + + L Sbjct: 308 FYADSARPDNVNEFQSNG-LNCINANKNVL----PGIECVARKMREGKFYVVDTASSGLL 362 Query: 69 DRWYNGSW 76 D Y +W Sbjct: 363 DEIYQYAW 370 >gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Structural protein # Family: family:all:698 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695065;genbank:gi:23455756;genbank:GeneID :955486 Length = 185 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 169 WGQHHWITVRGFREDTKQIDLIRAFSVE 196 WG TV+ +EDT LI A +VE Sbjct: 64 WGGDTVATVQTEKEDTFSYTLIEALNVE 91 >gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: major tail protein # Family: family:all:698 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996712;genbank:gi:45597427;genbank:GeneID :2767963 Length = 185 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 169 WGQHHWITVRGFREDTKQIDLIRAFSVE 196 WG TV+ +EDT LI A +VE Sbjct: 64 WGGDTVATVQTEKEDTFSYTLIEALNVE 91 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 134 ALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQHHWITVRGFRED 183 A V KD + + Y++ +F Q + GVDWG H+ ++ ED Sbjct: 224 AEGVVYKDFKEKVH-YIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAED 272 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 134 ALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQHHWITVRGFRED 183 A V KD + + Y++ +F Q + GVDWG H+ ++ ED Sbjct: 222 AEGVVYKDFKEKVH-YIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAED 270 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust. Identities = 8/24 (33%), Positives = 11/24 (45%) Query: 5 GIHALYTQSDQHEYVHKCDSCGHY 28 I L+ +HE+ C CG Y Sbjct: 262 AIWRLWQSGTRHEWAVPCPHCGQY 285 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 134 ALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQHHWITVRGFRED 183 A V KD + + Y+ +F Q + GVDWG H+ ++ ED Sbjct: 221 AEGVVYKDFKEKVH-YITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAED 269 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 134 ALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQHHWITVRGFRED 183 A V KD + + Y+ +F Q + GVDWG H+ ++ ED Sbjct: 221 AEGVVYKDFKEKVH-YITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAED 269 >gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024480;genbank:gi:48696439;genbank:GeneID :2948028 Length = 142 Score = 23.1 bits (48), Expect = 6.0, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 259 GQIKP---VWQDTRGMVTVDKLTQNKLHIADMKMGRLG 293 G I P V+ G +TV++L K + AD+ LG Sbjct: 45 GSIMPQEHVYLRYEGTITVERLRMKKENFADLGYASLG 82 >gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: ORF105 # Family: family:all:2792 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240911;genbank:gi:66395051;genbank:GeneID :5132680 Length = 142 Score = 23.1 bits (48), Expect = 6.0, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 259 GQIKP---VWQDTRGMVTVDKLTQNKLHIADMKMGRLG 293 G I P V+ G +TV++L K + AD+ LG Sbjct: 45 GSIMPQEHVYLRYEGTITVERLRMKKENFADLGYASLG 82 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 134 ALAVQEKDIMDNIRPYLEGPKFDRGQYRFISVGVDWGQHHWITVRGFREDTKQ 186 A ++ D D + + G G Y+ + W HW+ F + TK+ Sbjct: 146 AYELKSLDAFDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKR 198 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.138 0.427 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,166 Number of Sequences: 514 Number of extensions: 8983 Number of successful extensions: 59 Number of sequences better than 100.0: 25 Number of HSP's better than 100.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 26 length of query: 381 length of database: 206,069 effective HSP length: 73 effective length of query: 308 effective length of database: 168,547 effective search space: 51912476 effective search space used: 51912476 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)