BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019921.1_cdsid_YP_007237154.1 [gene=terL] [protein=phage terminase large subunit] [protein_id=YP_007237154.1] [location=19196..20857] (553 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 1100 0.0 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 1097 0.0 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 1097 0.0 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 666 0.0 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 614 e-178 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 541 e-155 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 539 e-155 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 372 e-105 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 166 9e-43 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 165 1e-42 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 165 1e-42 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 165 1e-42 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 162 8e-42 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 139 9e-35 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 98 2e-22 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 98 2e-22 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 98 2e-22 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 98 2e-22 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 98 2e-22 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 98 2e-22 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 98 2e-22 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 96 1e-21 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 93 6e-21 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 92 1e-20 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 90 6e-20 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 89 1e-19 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 89 1e-19 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 84 5e-18 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 82 1e-17 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 75 2e-15 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 74 6e-15 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 73 8e-15 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 73 1e-14 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 71 4e-14 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 70 7e-14 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 69 1e-13 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 67 5e-13 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 67 6e-13 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 66 1e-12 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 64 5e-12 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 63 7e-12 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 62 1e-11 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 62 2e-11 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 62 2e-11 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 62 3e-11 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 58 3e-10 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 50 7e-08 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 49 1e-07 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 47 5e-07 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 46 9e-07 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 46 1e-06 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 46 1e-06 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 45 2e-06 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 45 3e-06 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 44 4e-06 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 44 6e-06 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 44 6e-06 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 43 1e-05 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 42 2e-05 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 39 1e-04 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 38 3e-04 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 38 4e-04 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 37 4e-04 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 37 7e-04 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 36 0.001 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 34 0.004 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 34 0.006 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 32 0.017 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 32 0.018 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 32 0.026 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 30 0.066 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 28 0.33 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 27 0.47 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 27 0.64 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 25 2.0 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 25 2.2 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 25 2.4 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 24 4.6 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 24 5.2 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 23 6.5 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 23 7.1 gi|14207|lcl|protein:vir:8315 Length: 503 # NCBI annotation: gp3... 23 8.9 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/553 (96%), Positives = 546/553 (98%) Query: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY 60 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQ HIYSRDDVYFDEQKIEDCIKFIEKWY Sbjct: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWY 60 Query: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY Sbjct: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 HISIV+NSE+QAKTSFDEIR VLM+NKRNKTGKTPKAPYEVS+ KIINRATKSVIRYNTS Sbjct: 121 HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTS 180 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVR+GYID+MK Sbjct: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK 240 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEE 300 HKIASVLSGKVKNSRLF FYCKLDDPKEVDDR WEKANPMLHKPLSEYA+TLLSTIEEE Sbjct: 241 HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE 300 Query: 301 YNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 YNDLPFNRSNKPEF+TKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI Sbjct: 301 YNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 Query: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI Sbjct: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 Query: 421 VDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAK 480 VDWFLKA+EKYGLEKV+ADNYRTDIVRRAFE AGI+L+V+RNPKAIHGLLAPRIDT+FAK Sbjct: 421 VDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK 480 Query: 481 HNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD 540 HNVIYGD+PLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD Sbjct: 481 HNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD 540 Query: 541 MSKALDALMSIDF 553 MSKALDALMSIDF Sbjct: 541 MSKALDALMSIDF 553 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/553 (95%), Positives = 545/553 (98%) Query: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY 60 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQ HIYSRDDVYFDEQKIEDCIKFIEKWY Sbjct: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWY 60 Query: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY Sbjct: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 HISIV+NSE+QAKTSFDEIR VLM+NKRNKTGKTPKAPYEVS+ KIINRATKSVIRYNTS Sbjct: 121 HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTS 180 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVR+GYID+MK Sbjct: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK 240 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEE 300 HKIASVLSGKVKNSRLF FYCKLDDPKEVDDR WEKANPMLHKPLSEYA+TLLSTIEEE Sbjct: 241 HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE 300 Query: 301 YNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 YNDLPFNRSNKPEF+TKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI Sbjct: 301 YNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 Query: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI Sbjct: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 Query: 421 VDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAK 480 VDWFLKA+EKYGLEKV+ADNYRTDIVRRAFE AGI+L+V+RNPKAIHGLLAPRIDT+FAK Sbjct: 421 VDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK 480 Query: 481 HNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD 540 HNVIYGD+PLMRWFTNNVAVK+KPDGNKEYIKKDE RRKTDGFMAFVHALYRADDIVDKD Sbjct: 481 HNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALYRADDIVDKD 540 Query: 541 MSKALDALMSIDF 553 MSKALDALMSIDF Sbjct: 541 MSKALDALMSIDF 553 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/553 (95%), Positives = 545/553 (98%) Query: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY 60 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQ HIYSRDDVYFDEQKIEDCIKFIEKWY Sbjct: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWY 60 Query: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY Sbjct: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 HISIV+NSE+QAKTSFDEIR VLM+NKRNKTGKTPKAPYEVS+ KIINRATKSVIRYNTS Sbjct: 121 HISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTS 180 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVR+GYID+MK Sbjct: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMK 240 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEE 300 HKIASVLSGKVKNSRLF FYCKLDDPKEVDDR WEKANPMLHKPLSEYA+TLLSTIEEE Sbjct: 241 HKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE 300 Query: 301 YNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 YNDLPFNRSNKPEF+TKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI Sbjct: 301 YNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 Query: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI Sbjct: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 Query: 421 VDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAK 480 VDWFLKA+EKYGLEKV+ADNYRTDIVRRAFE AGI+L+V+RNPKAIHGLLAPRIDT+FAK Sbjct: 421 VDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAK 480 Query: 481 HNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD 540 HNVIYGD+PLMRWFTNNVAVK+KPDGNKEYIKKDE RRKTDGFMAFVHALYRADDIVDKD Sbjct: 481 HNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALYRADDIVDKD 540 Query: 541 MSKALDALMSIDF 553 MSKALDALMSIDF Sbjct: 541 MSKALDALMSIDF 553 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/553 (56%), Positives = 416/553 (75%), Gaps = 6/553 (1%) Query: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY 60 MISNK+VD YI ++ GKI+LNKER+DL N+LQ H+ SRDD+YFDE +IE+ I F EKWY Sbjct: 1 MISNKHVDNYIQSYESGKILLNKERVDLINHLQEHVLSRDDIYFDETQIENYISFSEKWY 60 Query: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 FP +++FI IFL K DE F+ EF I +GRGGGKNG IS +S++ +PLHG+ Y Sbjct: 61 FPLDNWEKFIAPFIFLYFKEDDELFYEEFFITLGRGGGKNGFISTLSNYFISPLHGINNY 120 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 +S+V+NSE+QAK SF E+ N + N + + ++ + +II +AT SV ++ TS Sbjct: 121 DVSVVANSEDQAKVSFKEVFNTIDGNPK------LEGSFDAWKAQIIGKATNSVFKFQTS 174 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 N KTKDGGREGCVI+DE H + ++++V GGLGK N R F+I T+GFVR G+ D ++ Sbjct: 175 NAKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNGFVRAGFYDKLE 234 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEE 300 + ++LSG+ N R+FPF CKLDDP EV + MWEKANP KPLS ++ LL+ + ++ Sbjct: 235 ERSKAILSGENLNDRMFPFICKLDDPAEVKNEAMWEKANPAFEKPLSPRSKRLLNKVRKQ 294 Query: 301 YNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 Y L N S + F+TKRMNLPEVDLEKV+APW++ILATNRE+P L N+ CIG D+A++ Sbjct: 295 YEALTNNPSGREAFMTKRMNLPEVDLEKVVAPWEDILATNREMPELQNRACIGAFDYASV 354 Query: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 +DFA+VGLLFR DDYIW HSF R+G+LD L+PPIKEWEK GLLTIVD+ I+ ++ Sbjct: 355 KDFAAVGLLFRVGDDYIWKTHSFARKGYLDIANLKPPIKEWEKQGLLTIVDEPTIDPRHV 414 Query: 421 VDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAK 480 V+WF++ +E +G++KV+ DN+R D++R FEA G EL++IRNP+A H LLAPRI+T+FA Sbjct: 415 VNWFVEMRETHGIQKVIGDNFRMDLMRPLFEAEGFELEIIRNPRAAHSLLAPRIETLFAN 474 Query: 481 HNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD 540 H +++GD+PLMRW+TNNVAVKIKPDGNKEY+KKDE RRKTDGF AFVHAL+RAD+I D D Sbjct: 475 HRIVFGDNPLMRWYTNNVAVKIKPDGNKEYLKKDEHRRKTDGFQAFVHALWRADEIEDMD 534 Query: 541 MSKALDALMSIDF 553 + + L+ L +I F Sbjct: 535 VEEVLNMLNAITF 547 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 614 bits (1583), Expect = e-178, Method: Compositional matrix adjust. Identities = 288/553 (52%), Positives = 400/553 (72%) Query: 1 MISNKYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWY 60 M + KYV +YI+ K GKII+NKER +L +YL+ +I +RDD+YFD QKIED + F EKW+ Sbjct: 1 MKTPKYVTQYIDKIKTGKIIVNKERQNLVDYLEKYILNRDDLYFDFQKIEDYVGFSEKWF 60 Query: 61 FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEY 120 F FQ+FI +FL + +T +F+EF I M RGGGKNG IS + F TPLHG+ +Y Sbjct: 61 FEIQDFQKFITCFVFLYEADTLTPYFSEFFISMARGGGKNGYISTLGAFFLTPLHGIPKY 120 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 ++S+V+NSE+QA+ SF EI +++ N P P+ +S+ I + K+ ++TS Sbjct: 121 NMSVVANSEKQAQVSFQEIYDMIESNDLYVRKDKPNNPFNISKVLIEGISMKAQFVFDTS 180 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 N KTKDG REGCV FDEIH + ++NVKR GLGK + RTFYI TDG VR+G++D +K Sbjct: 181 NEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDGHVREGFLDKLK 240 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEE 300 + A+VL G+ RLFPF CK+DD +E+ D +MW+KANPM P+++Y R L ++++ Sbjct: 241 ERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMFEAPMNDYGRQLFQEVKQQ 300 Query: 301 YNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANI 360 Y L FN S + EF+TKRMNLPE D + V+APW +ILATNR++P+LDN CIGGLD+A++ Sbjct: 301 YLSLKFNPSGRTEFMTKRMNLPETDSQSVVAPWDDILATNRDMPSLDNHECIGGLDYASL 360 Query: 361 RDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYI 420 +DFA+VGLLF+ +D+YIW HSF R+ FLD+ +L+PPI EW + GLLTIVD+ I ++I Sbjct: 361 KDFAAVGLLFKVDDEYIWKTHSFARKAFLDEYQLKPPIHEWAEKGLLTIVDEPTISPKHI 420 Query: 421 VDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAK 480 +DWFL+A++ YGL+KV+ADN+R D++R FE I+ +V++N +AI LLAPR++ +FA+ Sbjct: 421 IDWFLEAQKHYGLKKVIADNFRMDLLRPLFEENDIDYEVVKNTRAIQSLLAPRVEDMFAQ 480 Query: 481 HNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADDIVDKD 540 N+I+GD+PLMRW+T NVAVKI GNK Y KK+ VRRKTDGF A +HALYRADD+ Sbjct: 481 QNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKKEPVRRKTDGFQALIHALYRADDLNGAS 540 Query: 541 MSKALDALMSIDF 553 + +D L + F Sbjct: 541 LDAEIDLLRGLRF 553 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 541 bits (1393), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/564 (47%), Positives = 387/564 (68%), Gaps = 38/564 (6%) Query: 5 KYVDEYINLWKQGKIILNKERIDLFNYLQTHIYSR---DDVYFDEQKIEDCIKFIEKWYF 61 +YV YI+ +++G++I N+ER DL Y+ I R +++FDE+ I++CI FIEKW+F Sbjct: 3 EYVQNYIDDFEKGRVIFNQERKDLVAYIYREIIPRIEKKEIFFDEKNIKNCINFIEKWFF 62 Query: 62 PTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYH 121 FQ+FII+ +FL T+ + + I MGRGGGKNGLIS I +L +P HG+K Y+ Sbjct: 63 KLENFQKFIISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISGIIAYLISPFHGIKNYN 122 Query: 122 ISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSN 181 +S+V+NSE+QAKTSFDEI N + N + K Y ++++I + T SV+R+ TSN Sbjct: 123 VSLVANSEDQAKTSFDEIYNTVESNPK------LKEIYYNTKSEIKSIHTNSVMRFRTSN 176 Query: 182 TKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKH 241 TKDG R+G V+FDEIH + + V V + GLGK KN R FYI TDG+VR+G+IDSMK Sbjct: 177 GNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKD 236 Query: 242 KIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEY 301 K VLSG + + +FPF CK+D+ EVDD+ W+KANPM H+P+S+YA+ L + E+Y Sbjct: 237 KAKKVLSGAARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHQPMSDYAQELFDMVCEQY 296 Query: 302 NDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIR 361 ++ + SN+ EF+TKRM+ P +D+E+ +A +E++AT RE+P++ ++CIGGLD+A IR Sbjct: 297 EEMIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIR 356 Query: 362 DFASVGLLFRKNDDYIWLGHSFVRQGFLDDV-------------KLEPPIKEWEKMGLLT 408 DFA+VGLLF+ DDY+WL HSFVR+ F+D + PIK+WE+ GLLT Sbjct: 357 DFAAVGLLFKDRDDYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLT 416 Query: 409 IVDDDVIEIEYIVDWFLKAK--EKYGLEKVVADNYRTDIVRRAFEAAGIE---------- 456 ++D+ I +YIVDWF+K + E Y L+++V+DN+R +I++ FE G E Sbjct: 417 VIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFEREGFEVLSKNTFSAP 476 Query: 457 ----LDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIK 512 ++++RNP+AI LLAPRI+T FA H V++G + +MRW+T+NV ++K DGN EY+K Sbjct: 477 PGYQIEIVRNPRAIDSLLAPRIETAFANHRVVFGHNDMMRWYTHNVLRRLKSDGNVEYVK 536 Query: 513 KDEVRRKTDGFMAFVHALYRADDI 536 K++ RRKTDGF AF +A+YRAD + Sbjct: 537 KEDTRRKTDGFKAFEYAMYRADTL 560 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 539 bits (1389), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/563 (47%), Positives = 386/563 (68%), Gaps = 38/563 (6%) Query: 6 YVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDD---VYFDEQKIEDCIKFIEKWYFP 62 YV +YI+ +++G++I N+ER DL Y+ I R D ++FDE+ I++CI FIEKW+F Sbjct: 4 YVQDYIDDFEKGRVIFNQERQDLVAYIYREIVPRIDKKEIFFDEKNIKNCINFIEKWFFK 63 Query: 63 TLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHI 122 FQ+FII+ +FL T+ + + I MGRGGGKNGLIS I +L +P HG+K Y++ Sbjct: 64 LENFQKFIISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISGIIAYLLSPFHGIKNYNV 123 Query: 123 SIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNT 182 S+V+NSE+QAKTSFDEI N + N + K Y ++++I + T SV+R+ TSN Sbjct: 124 SLVANSEDQAKTSFDEIYNTVESNPK------LKEIYYNTKSEIKSIHTNSVMRFRTSNG 177 Query: 183 KTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHK 242 TKDG R+G V+FDEIH + + V V + GLGK KN R FYI TDG+VR+G+IDSMK K Sbjct: 178 NTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDK 237 Query: 243 IASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYN 302 VLSG + + +FPF CK+D+ EVDD+ W+KANPM H+P+S+YA+ L + E+Y Sbjct: 238 AKKVLSGNARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHEPMSDYAQELFDMVCEQYE 297 Query: 303 DLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRD 362 ++ + SN+ EF+TKRM+ P +D+E+ +A +E++AT RE+P++ ++CIGGLD+A IRD Sbjct: 298 EMVEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRD 357 Query: 363 FASVGLLFRKNDDYIWLGHSFVRQGFLDDV-------------KLEPPIKEWEKMGLLTI 409 FA+VGLLF+ DY+WL HSFVR+ F+D + PIK+WE+ GLLT+ Sbjct: 358 FAAVGLLFKNGADYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLTV 417 Query: 410 VDDDVIEIEYIVDWFLKAK--EKYGLEKVVADNYRTDIVRRAFEAAGIE----------- 456 +D+ I +YIVDWF+K + E Y L+++V+DN+R +I++ FE G E Sbjct: 418 IDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFEREGFEVLSKNTFTAPP 477 Query: 457 ---LDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKK 513 ++++RNP+AI LLAPRI+T FA H VI+G + +MRW+T+N+ ++K DGN EY+KK Sbjct: 478 GYQIEIVRNPRAIDSLLAPRIETAFANHKVIFGHNDMMRWYTHNILRRLKSDGNVEYVKK 537 Query: 514 DEVRRKTDGFMAFVHALYRADDI 536 ++ RRKTDGF AF +A+YRAD + Sbjct: 538 EDTRRKTDGFKAFEYAMYRADTL 560 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 372 bits (955), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/528 (39%), Positives = 308/528 (58%), Gaps = 15/528 (2%) Query: 7 VDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPTLPF 66 + E++ + + ++ KE+ L Y++ + + +V D ++ I E++++ PF Sbjct: 14 ISEWMRMVENDEVENCKEQKLLMKYVRGRL-EQKNVIIDHDTLDTAIATAERYFYKLFPF 72 Query: 67 QRFIIA---NIFLIDKNTD-EAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHI 122 Q+FI A +F ID++ D + F ++ I+ GRG GKNGL+S + +T HGV Y+I Sbjct: 73 QKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCMIFECTTKNHGVDHYNI 132 Query: 123 SIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNT 182 IV+ SE+QAKTSF++I N+L ENK T K Y + I +R S I+Y TSN Sbjct: 133 DIVATSEDQAKTSFEDIYNMLEENK-----DTMKNVYRWNLVAIQHRKNGSTIKYKTSNA 187 Query: 183 KTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHK 242 +TKDG R G V FDE H + V GLGKK+ R F+++TDG+VR +D K Sbjct: 188 RTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGYVRGSVLDDRKVL 247 Query: 243 IASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYN 302 VL+G+ NS++FPF CKLD P EV ++ W KANPM+ Y + L I++ ++ Sbjct: 248 AQQVLNGEKPNSKMFPFICKLDSPDEVQNKTKWAKANPMI-----LYYKPLRIEIDQHWD 302 Query: 303 DLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRD 362 D + EF+TKRMN P D V W +I ATN+ +P+L IGG+DFA++RD Sbjct: 303 DAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIGGIDFADVRD 362 Query: 363 FASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVD 422 F +VGLLF+K YI+ H+F+ L K + PI E + GL TI+ D+ I+ +Y + Sbjct: 363 FCAVGLLFKKEGKYIFKHHTFICAESLKITKFKFPIHEAVEKGLATIIHDNYIDEDYPLQ 422 Query: 423 WFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHN 482 WFL+ +++ + + D++R ++ AF +AG L +R+ H L+ +D +FA H Sbjct: 423 WFLEQAKEHRIINIATDSFRYKSLKEAFTSAGAPLIQVRSGPYSHNRLSSMVDKLFASHK 482 Query: 483 VIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHAL 530 +I+GDD LMRW+ NNVA+K G K YIK + RKTDGF A +H L Sbjct: 483 IIFGDDMLMRWYCNNVAIKFDARGEKTYIKIEPKTRKTDGFFALLHTL 530 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 166 bits (419), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 144/514 (28%), Positives = 241/514 (46%), Gaps = 34/514 (6%) Query: 44 FDEQKIEDCIKFIEKWYFPT---------LPFQRFIIANIF-LIDKNTDEAFFTEFAIFM 93 FDE+ I+FIEK+ P+ P+Q FII ++F + K T F E IFM Sbjct: 52 FDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFM 111 Query: 94 GRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGK 153 GR GK IS ++++ + G I +++N +QA+ FDE + ++ K Sbjct: 112 GRKNGKTTTISGVANY-AVSQDGENGAEIHLLANVMKQARILFDESKAMI------KASP 164 Query: 154 TPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGG 213 + + + +I AT S I S++ DG IFDEIH F ++++V + Sbjct: 165 KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 224 Query: 214 LGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRN 273 + YI+T G+ DG + M L +++ R F + LDD +++D + Sbjct: 225 RAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSS 284 Query: 274 MWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPW 333 W KANP L + L ++EE+ + + +FITKR N+ + E + Sbjct: 285 NWIKANPNLGVSID------LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDY 338 Query: 334 KEILATNREIPNLD---NQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFL 389 L N EI +LD + C G D + DF + F N L HS++ + + Sbjct: 339 P-TLQKNNEIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV 397 Query: 390 DDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRA 449 + + P +EWE+ GLLTI D I+ + +++W +K E Y +EK+ D + + Sbjct: 398 EYSNEKIPYREWEEDGLLTIQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQE 457 Query: 450 FEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKE 509 + G E + R + +F +I+ ++PLM+W+ NNV +K+ +GN Sbjct: 458 LKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGN-- 515 Query: 510 YIKKDEVR-RKTDGFMAFVHALYRADDIVDKDMS 542 ++ + R RK DGF AF++ DI++K +S Sbjct: 516 WLPSKQSRYRKIDGFAAFLNTY---TDIMNKVVS 546 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 165 bits (417), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/513 (27%), Positives = 239/513 (46%), Gaps = 32/513 (6%) Query: 44 FDEQKIEDCIKFIEKWYFPT---------LPFQRFIIANIF-LIDKNTDEAFFTEFAIFM 93 FDE+ I+FIEK+ P+ P+Q FII ++F + K T F E IFM Sbjct: 52 FDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFM 111 Query: 94 GRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGK 153 GR GK IS ++++ + G I +++N +QA+ FDE + ++ K Sbjct: 112 GRKNGKTTTISGVANY-AVSQDGENGAEIHLLANVMKQARILFDESKAMI------KASP 164 Query: 154 TPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGG 213 + + +I AT S I S++ DG IFDEIH F ++++V + Sbjct: 165 KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 224 Query: 214 LGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRN 273 + YI+T G+ DG + M L +++ R F + LDD +++D + Sbjct: 225 RAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSS 284 Query: 274 MWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPW 333 W KANP L ++ L ++EE+ + + +FITKR N+ + E + Sbjct: 285 NWIKANPNLGVSIN------LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDY 338 Query: 334 KEILATNR--EIPNLDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD 390 + N + L+ + C G D + DF + F N L HS++ + ++ Sbjct: 339 PTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVE 398 Query: 391 DVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAF 450 + P +EWE+ GLLT+ D I+ + +++W +K E Y +EK+ D + + Sbjct: 399 YSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQEL 458 Query: 451 EAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEY 510 + G E + R + +F +I+ ++PLM+W+ NNV +K+ +GN + Sbjct: 459 KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGN--W 516 Query: 511 IKKDEVR-RKTDGFMAFVHALYRADDIVDKDMS 542 + + R RK DGF AF++ DI++K +S Sbjct: 517 LPSKQSRYRKIDGFAAFLNTY---TDIMNKVVS 546 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 165 bits (417), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/513 (27%), Positives = 239/513 (46%), Gaps = 32/513 (6%) Query: 44 FDEQKIEDCIKFIEKWYFPT---------LPFQRFIIANIF-LIDKNTDEAFFTEFAIFM 93 FDE+ I+FIEK+ P+ P+Q FII ++F + K T F E IFM Sbjct: 52 FDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFM 111 Query: 94 GRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGK 153 GR GK IS ++++ + G I +++N +QA+ FDE + ++ K Sbjct: 112 GRKNGKTTTISGVANY-AVSQDGENGAEIHLLANVMKQARILFDESKAMI------KASP 164 Query: 154 TPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGG 213 + + +I AT S I S++ DG IFDEIH F ++++V + Sbjct: 165 KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 224 Query: 214 LGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRN 273 + YI+T G+ DG + M L +++ R F + LDD +++D + Sbjct: 225 RAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSS 284 Query: 274 MWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPW 333 W KANP L ++ L ++EE+ + + +FITKR N+ + E + Sbjct: 285 NWIKANPNLGVSIN------LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDY 338 Query: 334 KEILATNR--EIPNLDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD 390 + N + L+ + C G D + DF + F N L HS++ + ++ Sbjct: 339 PTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVE 398 Query: 391 DVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAF 450 + P +EWE+ GLLT+ D I+ + +++W +K E Y +EK+ D + + Sbjct: 399 YSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQEL 458 Query: 451 EAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEY 510 + G E + R + +F +I+ ++PLM+W+ NNV +K+ +GN + Sbjct: 459 KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGN--W 516 Query: 511 IKKDEVR-RKTDGFMAFVHALYRADDIVDKDMS 542 + + R RK DGF AF++ DI++K +S Sbjct: 517 LPSKQSRYRKIDGFAAFLNTY---TDIMNKVVS 546 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 165 bits (417), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/513 (27%), Positives = 239/513 (46%), Gaps = 32/513 (6%) Query: 44 FDEQKIEDCIKFIEKWYFPT---------LPFQRFIIANIF-LIDKNTDEAFFTEFAIFM 93 FDE+ I+FIEK+ P+ P+Q FII ++F + K T F E IFM Sbjct: 52 FDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFM 111 Query: 94 GRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGK 153 GR GK IS ++++ + G I +++N +QA+ FDE + ++ K Sbjct: 112 GRKNGKTTTISGVANY-AVSQDGENGAEIHLLANVMKQARILFDESKAMI------KASP 164 Query: 154 TPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGG 213 + + +I AT S I S++ DG IFDEIH F ++++V + Sbjct: 165 KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 224 Query: 214 LGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRN 273 + YI+T G+ DG + M L +++ R F + LDD +++D + Sbjct: 225 RAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSS 284 Query: 274 MWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPW 333 W KANP L ++ L ++EE+ + + +FITKR N+ + E + Sbjct: 285 NWIKANPNLGVSIN------LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDY 338 Query: 334 KEILATNR--EIPNLDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD 390 + N + L+ + C G D + DF + F N L HS++ + ++ Sbjct: 339 PTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVE 398 Query: 391 DVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAF 450 + P +EWE+ GLLT+ D I+ + +++W +K E Y +EK+ D + + Sbjct: 399 YSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQEL 458 Query: 451 EAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEY 510 + G E + R + +F +I+ ++PLM+W+ NNV +K+ +GN + Sbjct: 459 KNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGN--W 516 Query: 511 IKKDEVR-RKTDGFMAFVHALYRADDIVDKDMS 542 + + R RK DGF AF++ DI++K +S Sbjct: 517 LPSKQSRYRKIDGFAAFLNTY---TDIMNKVVS 546 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 162 bits (411), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 143/514 (27%), Positives = 241/514 (46%), Gaps = 34/514 (6%) Query: 44 FDEQKIEDCIKFIEKWYFPT---------LPFQRFIIANIF-LIDKNTDEAFFTEFAIFM 93 FDE+ I+FIEK+ P+ P+Q FII ++F + K T F E IFM Sbjct: 52 FDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFM 111 Query: 94 GRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGK 153 GR GK IS ++++ + G I +++N +QA+ FDE + ++ K Sbjct: 112 GRKNGKTTTISGVANY-AVSQDGENGAEIHLLANVMKQARILFDESKAMI------KASP 164 Query: 154 TPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGG 213 + + + +I AT S I S++ DG IFDEIH F ++++V + Sbjct: 165 KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 224 Query: 214 LGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRN 273 + YI+T G+ DG + +M L +++ R F + LDD +++D + Sbjct: 225 RAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSS 284 Query: 274 MWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPW 333 W KANP L + L ++EE+ + +FITKR N+ + E + Sbjct: 285 NWIKANPNLGVSID------LDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDY 338 Query: 334 KEILATNREIPNLD---NQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFL 389 L N +I +LD + C G D + DF + F N L HS++ + + Sbjct: 339 P-TLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV 397 Query: 390 DDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRA 449 + + P EWE+ GLLTI D+ I+ + +++W +K E Y +EK+ D + + Sbjct: 398 EYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQE 457 Query: 450 FEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKE 509 + G E + R + +F +I+ ++PLM+W+ NNV +K+ +GN Sbjct: 458 LKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGN-- 515 Query: 510 YIKKDEVR-RKTDGFMAFVHALYRADDIVDKDMS 542 ++ + R RK DGF AF++ DI++K +S Sbjct: 516 WLPSKQSRYRKIDGFAAFLNTY---TDIMNKVVS 546 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 139 bits (350), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 122/455 (26%), Positives = 213/455 (46%), Gaps = 24/455 (5%) Query: 93 MGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTG 152 MGR GK IS ++++ + G I +++N +QA+ FDE + ++ K Sbjct: 1 MGRKNGKTTTISGVANY-AVSQDGENGAEIHLLANVMKQARILFDESKAMI------KAS 53 Query: 153 KTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRG 212 + + + +I AT S I S++ DG IFDEIH F ++++V + Sbjct: 54 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 113 Query: 213 GLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDR 272 + YI+T G+ DG + +M L +++ R F + LDD +++D Sbjct: 114 SRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDS 173 Query: 273 NMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAP 332 + W KANP L + L+ ++EE+ + +FITKR N+ + E Sbjct: 174 SNWIKANPNLGVSID------LAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFID 227 Query: 333 WKEILATNREIPNLD---NQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGF 388 + L N +I +LD + C G D + DF + F N L HS++ + Sbjct: 228 YP-TLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHK 286 Query: 389 LDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRR 448 ++ + P EWE+ GLLTI D+ I+ + +++W +K E Y +EK+ D + + Sbjct: 287 VEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQ 346 Query: 449 AFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNK 508 + G E + R + +F +I+ ++PLM+W+ NNV +K+ +GN Sbjct: 347 ELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGN- 405 Query: 509 EYIKKDEVR-RKTDGFMAFVHALYRADDIVDKDMS 542 ++ + R RK DGF AF++ DI++K +S Sbjct: 406 -WLPSKQSRYRKIDGFAAFLNTY---TDIMNKVVS 436 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 222/519 (42%), Gaps = 42/519 (8%) Query: 42 VYFDEQKIEDCIKFIE-------KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMG 94 ++D IKF+E P + FQ+FI+ +++ + FT+ I M Sbjct: 41 CHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMA 99 Query: 95 RGGGKNGLISAISDFLSTPLHGVKEY-----HISIVSNSEEQAKTSFDEIRNVLMENKRN 149 R GK+ ++S +S ++ L G +Y I + S++ +QA+T F + N Sbjct: 100 RKQGKSLIVSGMS--VNELLFG--QYPKFNRQIYVASSTYKQAQTIFKMASQQV--NLMR 153 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K + +V +T I + + SV ++N DG I DE+ EM + Sbjct: 154 SKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSR 213 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEV 269 + G+ +KN T +ST G + + I +L+ +V+ F + ++D +EV Sbjct: 214 FKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEV 273 Query: 270 DDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV 329 D W KA P+L E+ +T+L ++ + D ++ + + K NL + E Sbjct: 274 QDETKWIKAMPLLES--KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDS 331 Query: 330 ---IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV- 384 I+ W++++ +PN++ + G+D + + D SVG +F +D ++L HSF+ Sbjct: 332 LLDISDWEQVITP---MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIG 388 Query: 385 ------RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLK--AKEKYGLEKV 436 ++ D + E I+ E T D +I+ + ++D+ +K ++ V Sbjct: 389 LRTNLEQKSKRDKINYELAIERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAV 446 Query: 437 VADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWF 494 D + E+ ++ +I ++ L A + + D+ L+ Sbjct: 447 CYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTS 506 Query: 495 TNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 NN AV I+ + I K R+K D ++ + A A Sbjct: 507 VNN-AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 222/519 (42%), Gaps = 42/519 (8%) Query: 42 VYFDEQKIEDCIKFIE-------KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMG 94 ++D IKF+E P + FQ+FI+ +++ + FT+ I M Sbjct: 41 CHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMA 99 Query: 95 RGGGKNGLISAISDFLSTPLHGVKEY-----HISIVSNSEEQAKTSFDEIRNVLMENKRN 149 R GK+ ++S +S ++ L G +Y I + S++ +QA+T F + N Sbjct: 100 RKQGKSLIVSGMS--VNELLFG--QYPKFNRQIYVASSTYKQAQTIFKMASQQV--NLMR 153 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K + +V +T I + + SV ++N DG I DE+ EM + Sbjct: 154 SKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSR 213 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEV 269 + G+ +KN T +ST G + + I +L+ +V+ F + ++D +EV Sbjct: 214 FKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEV 273 Query: 270 DDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV 329 D W KA P+L E+ +T+L ++ + D ++ + + K NL + E Sbjct: 274 QDETKWIKAMPLLES--KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDS 331 Query: 330 ---IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV- 384 I+ W++++ +PN++ + G+D + + D SVG +F +D ++L HSF+ Sbjct: 332 LLDISDWEQVITP---MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIG 388 Query: 385 ------RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLK--AKEKYGLEKV 436 ++ D + E I+ E T D +I+ + ++D+ +K ++ V Sbjct: 389 LRTNLEQKSKRDKINYELAIERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAV 446 Query: 437 VADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWF 494 D + E+ ++ +I ++ L A + + D+ L+ Sbjct: 447 CYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTS 506 Query: 495 TNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 NN AV I+ + I K R+K D ++ + A A Sbjct: 507 VNN-AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 222/519 (42%), Gaps = 42/519 (8%) Query: 42 VYFDEQKIEDCIKFIE-------KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMG 94 ++D IKF+E P + FQ+FI+ +++ + FT+ I M Sbjct: 41 CHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMA 99 Query: 95 RGGGKNGLISAISDFLSTPLHGVKEY-----HISIVSNSEEQAKTSFDEIRNVLMENKRN 149 R GK+ ++S +S ++ L G +Y I + S++ +QA+T F + N Sbjct: 100 RKQGKSLIVSGMS--VNELLFG--QYPKFNRQIYVASSTYKQAQTIFKMASQQV--NLMR 153 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K + +V +T I + + SV ++N DG I DE+ EM + Sbjct: 154 SKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSR 213 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEV 269 + G+ +KN T +ST G + + I +L+ +V+ F + ++D +EV Sbjct: 214 FKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEV 273 Query: 270 DDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV 329 D W KA P+L E+ +T+L ++ + D ++ + + K NL + E Sbjct: 274 QDETKWIKAMPLLES--KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDS 331 Query: 330 ---IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV- 384 I+ W++++ +PN++ + G+D + + D SVG +F +D ++L HSF+ Sbjct: 332 LLDISDWEQVITP---MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIG 388 Query: 385 ------RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLK--AKEKYGLEKV 436 ++ D + E I+ E T D +I+ + ++D+ +K ++ V Sbjct: 389 LRTNLEQKSKRDKINYELAIERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAV 446 Query: 437 VADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWF 494 D + E+ ++ +I ++ L A + + D+ L+ Sbjct: 447 CYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTS 506 Query: 495 TNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 NN AV I+ + I K R+K D ++ + A A Sbjct: 507 VNN-AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 111/482 (23%), Positives = 200/482 (41%), Gaps = 32/482 (6%) Query: 66 FQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISD---FLSTPLHGVKEYH 121 FQ FI+ NIF K F + I + R K+ L++ I+ FLS ++ Sbjct: 82 FQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIASYECFLSP-----EQSE 136 Query: 122 ISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIR-YNTS 180 + I EQ+ ++E+ + + K Y S +I ++ + S+I+ + Sbjct: 137 VYIAGWGREQSSIVYNEVL------AQVQACDLLKGKYTDSYGRIRHKKSGSIIQPLSKE 190 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 KT DG + DE H E+ +V G+ ++N I+T GF + Sbjct: 191 ARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIITTAGFNLASPCYTEY 250 Query: 241 HKIASVL--SGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIE 298 ++ V+ ++N F C+LD ++ D W KANP++ E L + Sbjct: 251 QYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIV--ATYEEGMNFLRSEL 308 Query: 299 EEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATN-REIPNLDNQMCIGGLDF 357 + D+P F+TK MN+ + P + A +E +LD + C G+D Sbjct: 309 QTALDVP---EKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQIDLDVRDCYVGIDL 365 Query: 358 ANIRDFASVGLLFRKNDD--YIWLGHSFVRQGFLDDVKL--EPPIKEWEKMGLLTIVDDD 413 + D SV + +D Y+W HSF+ + L + + + P W K G +T+ Sbjct: 366 SMRIDLTSVSGIVPMDDGRFYVW-SHSFIPEDTLAEKRRTDKVPYDLWVKQGWITVTPGA 424 Query: 414 VIEIEYIVDWFLKAKEK--YGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLA 471 V++ ++I + + E + ++++ D Y EA G + IR Sbjct: 425 VVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEAEGYVMVEIRQGFRTLSEPT 484 Query: 472 PRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALY 531 R + +++ D+P++ W N VK + N + KD+ + D A ++A+ Sbjct: 485 KRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENI-MLDKDKSTGRIDPIAALINAMV 543 Query: 532 RA 533 RA Sbjct: 544 RA 545 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 222/519 (42%), Gaps = 42/519 (8%) Query: 42 VYFDEQKIEDCIKFIE-------KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMG 94 ++D IKF+E P + FQ+FI+ +++ + FT+ I M Sbjct: 41 CHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMA 99 Query: 95 RGGGKNGLISAISDFLSTPLHGVKEY-----HISIVSNSEEQAKTSFDEIRNVLMENKRN 149 R GK+ ++S +S ++ L G +Y I + S++ +QA+T F + N Sbjct: 100 RKQGKSLIVSGMS--VNELLFG--QYPKFNRQIYVASSTYKQAQTIFKMASQQV--NLMR 153 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K + +V +T I + + SV ++N DG I DE+ EM + Sbjct: 154 SKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSR 213 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEV 269 + G+ +KN T +ST G + + I +L+ +V+ F + ++D +EV Sbjct: 214 FKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEV 273 Query: 270 DDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV 329 D W KA P+L E+ +T+L ++ + D ++ + + K NL + E Sbjct: 274 QDETKWIKAMPLLES--KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDS 331 Query: 330 ---IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV- 384 I+ W++++ +PN++ + G+D + + D SVG +F +D ++L HSF+ Sbjct: 332 LLDISDWEQVITP---MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIG 388 Query: 385 ------RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLK--AKEKYGLEKV 436 ++ D + E I+ E T D +I+ + ++D+ +K ++ V Sbjct: 389 LRTNLEQKSKRDKINYELAIERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAV 446 Query: 437 VADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWF 494 D + E+ ++ +I ++ L A + + D+ L+ Sbjct: 447 CYDPWNAQSFITTIESMALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTS 506 Query: 495 TNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 NN AV I+ + I K R+K D ++ + A A Sbjct: 507 VNN-AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 222/519 (42%), Gaps = 42/519 (8%) Query: 42 VYFDEQKIEDCIKFIE-------KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMG 94 ++D IKF+E P + FQ+FI+ +++ + FT+ I M Sbjct: 41 CHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMA 99 Query: 95 RGGGKNGLISAISDFLSTPLHGVKEY-----HISIVSNSEEQAKTSFDEIRNVLMENKRN 149 R GK+ ++S +S ++ L G +Y I + S++ +QA+T F + N Sbjct: 100 RKQGKSLIVSGMS--VNELLFG--QYPKFNRQIYVASSTYKQAQTIFKMASQQV--NLMR 153 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K + +V +T I + + SV ++N DG I DE+ EM + Sbjct: 154 SKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSR 213 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEV 269 + G+ +KN T +ST G + + I +L+ +V+ F + ++D +EV Sbjct: 214 FKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEV 273 Query: 270 DDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV 329 D W KA P+L E+ +T+L ++ + D ++ + + K NL + E Sbjct: 274 QDETKWIKAMPLLES--KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDS 331 Query: 330 ---IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV- 384 I+ W++++ +PN++ + G+D + + D SVG +F +D ++L HSF+ Sbjct: 332 LLDISDWEQVITP---MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIG 388 Query: 385 ------RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLK--AKEKYGLEKV 436 ++ D + E I+ E T D +I+ + ++D+ +K ++ V Sbjct: 389 LRTNLEQKSKRDKINYELAIERGE--AETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAV 446 Query: 437 VADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWF 494 D + E+ ++ +I ++ L A + + D+ L+ Sbjct: 447 CYDPWNAQSFITTIESMALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTS 506 Query: 495 TNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 NN AV I+ + I K R+K D ++ + A A Sbjct: 507 VNN-AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 222/519 (42%), Gaps = 42/519 (8%) Query: 42 VYFDEQKIEDCIKFIE-------KWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMG 94 ++D IKF+E P + FQ+FI+ +++ + FT+ I M Sbjct: 41 CHWDNHLSNKAIKFVEMLPDPKTNQPMPLMEFQKFIVGSLYGW-RRGQYRMFTKAYISMA 99 Query: 95 RGGGKNGLISAISDFLSTPLHGVKEY-----HISIVSNSEEQAKTSFDEIRNVLMENKRN 149 R GK+ ++S +S ++ L G +Y I + S++ +QA+T F + N Sbjct: 100 RKQGKSLIVSGMS--VNELLFG--QYPKFNRQIYVASSTYKQAQTIFKMASQQV--NLMR 153 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K + +V +T I + + SV ++N DG I DE+ EM + Sbjct: 154 SKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSR 213 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEV 269 + G+ +KN T +ST G + + I +L+ +V+ F + ++D +EV Sbjct: 214 FKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEV 273 Query: 270 DDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV 329 D W KA P+L E+ +T+L ++ + D ++ + + K NL + E Sbjct: 274 QDETKWIKAMPLLES--KEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDS 331 Query: 330 ---IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV- 384 I+ W++++ +PN++ + G+D + + D SVG +F +D ++L HSF+ Sbjct: 332 LLDISDWEQVITP---MPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIG 388 Query: 385 ------RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLK--AKEKYGLEKV 436 ++ D + E I+ E T D +I+ + ++D+ +K ++ V Sbjct: 389 LRTNLEQKSKRDKINYELAIERGE--AETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAV 446 Query: 437 VADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWF 494 D + E+ ++ +I ++ L A + + D+ L+ Sbjct: 447 CYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTS 506 Query: 495 TNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 NN AV I+ + I K R+K D ++ + A A Sbjct: 507 VNN-AVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEA 544 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 95.9 bits (237), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 129/557 (23%), Positives = 239/557 (42%), Gaps = 53/557 (9%) Query: 6 YVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPT-- 63 Y+++ + K+ II+NK + +Q I + + ++ I++IE ++ T Sbjct: 3 YLNKMLEYNKENGIIINKY---IRKTIQKQIRIHNKYIYRYDRVTQAIEWIEDNFYLTTG 59 Query: 64 -------LPFQRF---IIANIFLID-KNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLS 111 LP QR+ ++ +ID K E + +GRG GK+ L++ + +++ Sbjct: 60 NLMKIELLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWM- 118 Query: 112 TPLHGVKEYHISIVSNSEEQAKTSFDEIRN------VLMENKRNKTGKTPKAPYEVSQTK 165 L G +++ QA+ FD++RN L NK K+ K E + Sbjct: 119 -ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT--- 174 Query: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYI 225 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI Sbjct: 175 ----SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI 230 Query: 226 STDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKP 285 ++ G RDG D + + S + N R F L++ ++V D+ W A P++ Sbjct: 231 TSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIG-- 286 Query: 286 LSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPN 345 + S + EEY + + + +F+ M LP D P ++ T+ + Sbjct: 287 ----SVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSV 341 Query: 346 LDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSF-VRQGFLD-DVKLEPPIKEWEK 403 + G+D + I D +V + +F VR + D + + E+ Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVD 401 Query: 404 MGLLTIVDDDVIEIEYIVDWFLKAKEKYG--LEKVVADNYRTDIV-----RRAFEAAGIE 456 G L ++D + I + ++ + + K G L K+ D R +I+ R F+ G Sbjct: 402 RGELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDN 461 Query: 457 LDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEV 516 IR +++ + + + A++ +I+ + +M+W NN AVKI G+ Y KK E Sbjct: 462 QRAIRQGFSMNDYI-KLLKSKLAENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE- 518 Query: 517 RRKTDGFMAFVHALYRA 533 + K D +A AL A Sbjct: 519 KDKIDPTVALTMALEMA 535 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 93.2 bits (230), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 125/557 (22%), Positives = 237/557 (42%), Gaps = 53/557 (9%) Query: 6 YVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPT-- 63 Y+++ + K+ II+NK + +Q I + + ++ I++I+ ++ T Sbjct: 3 YLNKMLEYNKENGIIINKY---IRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTG 59 Query: 64 -------LPFQRF----IIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLS 111 LP QR+ ++ + +K E + +GRG GK+ L++ + +++ Sbjct: 60 NLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWM- 118 Query: 112 TPLHGVKEYHISIVSNSEEQAKTSFDEIRN------VLMENKRNKTGKTPKAPYEVSQTK 165 L G +++ QA+ FD++RN L NK K+ K E + Sbjct: 119 -ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT--- 174 Query: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYI 225 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI Sbjct: 175 ----SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI 230 Query: 226 STDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKP 285 ++ G RDG D + + S + N R F L++ ++V D+ W A P++ Sbjct: 231 TSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDV 288 Query: 286 LSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPN 345 S + EEY + + + +F+ M LP D P ++ T+ + Sbjct: 289 PK------WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSV 341 Query: 346 LDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD-DVKLEPPIKEWEK 403 + G+D + I D +V + + Y + VR + D + + E+ Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVD 401 Query: 404 MGLLTIVDDDVIEIEYIVDWFLKAKEKYG--LEKVVADNYRTDIV-----RRAFEAAGIE 456 G L ++D + I + ++ + + K G L K+ D R +I+ R F+ G Sbjct: 402 RGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDN 461 Query: 457 LDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEV 516 IR +++ + + + ++ +I+ + +M+W NN AVKI G+ Y KK E Sbjct: 462 QRAIRQGFSMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE- 518 Query: 517 RRKTDGFMAFVHALYRA 533 + K D +A AL A Sbjct: 519 KDKIDPTVALTMALEMA 535 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 92.4 bits (228), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 128/557 (22%), Positives = 237/557 (42%), Gaps = 53/557 (9%) Query: 6 YVDEYINLWKQGKIILNKERIDLFNYLQTHIYSRDDVYFDEQKIEDCIKFIEKWYFPT-- 63 Y+++ + K+ II+NK + +Q I + + ++ I++IE ++ T Sbjct: 3 YLNKMLEYNKENGIIINKY---IRKTIQKQIRIHNKYIYRYDRVTQAIEWIEDNFYLTTG 59 Query: 64 -------LPFQRF---IIANIFLID-KNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLS 111 LP QR+ ++ +ID K E + +GRG GK+ L++ + +++ Sbjct: 60 NLMKIELLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWM- 118 Query: 112 TPLHGVKEYHISIVSNSEEQAKTSFDEIRN------VLMENKRNKTGKTPKAPYEVSQTK 165 L G +++ QA+ FD++RN L NK K+ K E + Sbjct: 119 -ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFA--- 174 Query: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYI 225 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI Sbjct: 175 ----SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI 230 Query: 226 STDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKP 285 ++ G RDG D + + S + N R F L++ ++V D+ W A P++ Sbjct: 231 TSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIG-- 286 Query: 286 LSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPN 345 + S + EEY + + + +F+ M LP D P ++ T+ + Sbjct: 287 ----SVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSV 341 Query: 346 LDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSF-VRQGFLD-DVKLEPPIKEWEK 403 + G+D + I D +V + +F VR + D + + E+ Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVD 401 Query: 404 MGLLTIVDDDVIEIEYIVDWFLKAKEKYG--LEKVVADNYRTDIV-----RRAFEAAGIE 456 G L ++D + I + ++ + K G L K+ D R +I+ R F+ G Sbjct: 402 RGELILLDTEYINVNDLIPHINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDN 461 Query: 457 LDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEV 516 IR +++ + + + ++ +I+ + +M+W NN AVKI G+ Y KK E Sbjct: 462 QRAIRQGFSMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE- 518 Query: 517 RRKTDGFMAFVHALYRA 533 + K D +A AL A Sbjct: 519 KDKIDPTVALTMALEMA 535 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 90.1 bits (222), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 112/494 (22%), Positives = 209/494 (42%), Gaps = 43/494 (8%) Query: 56 IEKWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLSTPL 114 ++KW++ ++ + +K E + +GRG GK+ L++ + +++ L Sbjct: 69 VQKWWYE------LMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWM--IL 120 Query: 115 HGVKEYHISIVSNSEEQAKTSFDEIRN------VLMENKRNKTGKTPKAPYEVSQTKIIN 168 G +++ QA+ FD++RN L NK K+ K E + Sbjct: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT------ 174 Query: 169 RATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTD 228 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI++ Sbjct: 175 -SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSG 233 Query: 229 GFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSE 288 G RDG D + + S + N R F L++ ++V D+ W A P++ Sbjct: 234 GLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK- 290 Query: 289 YARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDN 348 S + EEY + + + +F+ M LP D P ++ T+ + + Sbjct: 291 -----WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSVFNK 344 Query: 349 QMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSF-VRQGFLD-DVKLEPPIKEWEKMGL 406 G+D + I D +V + +F VR + D + + E+ G Sbjct: 345 NRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGE 404 Query: 407 LTIVDDDVIEIEYIVDWFLKAKEKYG--LEKVVADNYRTDIV-----RRAFEAAGIELDV 459 L ++D + I + ++ + + K G L K+ D R +I+ R F+ G Sbjct: 405 LILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRA 464 Query: 460 IRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRK 519 IR +++ + + + ++ +I+ + +M+W NN AVKI G+ Y KK E + K Sbjct: 465 IRQGFSMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE-KDK 521 Query: 520 TDGFMAFVHALYRA 533 D +A AL A Sbjct: 522 IDPTVALTMALEMA 535 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 114/489 (23%), Positives = 206/489 (42%), Gaps = 38/489 (7%) Query: 62 PTLPFQRFIIANIFLID-KNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLSTPLHGVKE 119 PT + ++ ++D K E + +GRG GK+ L++ + +++ L G Sbjct: 68 PTQKYWYELMLGYDMVDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWM--ILGGQYG 125 Query: 120 YHISIVSNSEEQAKTSFDEIRN------VLMENKRNKTGKTPKAPYEVSQTKIINRATKS 173 +++ QA+ FD++RN L NK K+ K E + A K+ Sbjct: 126 GESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT-------AFKT 178 Query: 174 VIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRD 233 + T++T GG IFDE+H + +V +G K+ N ++ YI++ G RD Sbjct: 179 TFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRD 238 Query: 234 GYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTL 293 G D + + S + N R F L++ ++V D+ W A P++ Sbjct: 239 GLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK------ 290 Query: 294 LSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIG 353 S + EEY + + + +F+ M LP D P ++ T + + Sbjct: 291 WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTEFNLSVFNKNRTYV 349 Query: 354 GLDFANIRDFASVGLLFRKNDDYIWLGHSF-VRQGFLD-DVKLEPPIKEWEKMGLLTIVD 411 G+D + I D +V + +F VR + D + + E+ G L ++D Sbjct: 350 GIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 Query: 412 DDVIEIEYIVDWFLKAKEKYG--LEKVVADNYRTDIV-----RRAFEAAGIELDVIRNPK 464 + I + ++ + + K G L K+ D R +I+ R F+ G IR Sbjct: 410 TEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGF 469 Query: 465 AIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFM 524 +++ + + + ++ +I+ + +M+W NN AVKI G+ Y KK E + K D + Sbjct: 470 SMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE-KDKIDPTV 526 Query: 525 AFVHALYRA 533 A AL A Sbjct: 527 ALTMALEMA 535 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 121/491 (24%), Positives = 214/491 (43%), Gaps = 39/491 (7%) Query: 62 PTLPFQRFIIANIF-LIDKN-TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHG--- 116 P PFQ+FII +I+ +DK+ ++ FT+ I M R GK+ LIS + L L G Sbjct: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGV--ILYEFLFGKNP 121 Query: 117 VKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIR 176 + + +N +QA F +++ L R G K ++++ +++N S IR Sbjct: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGI--KRMVKITRDELVNLDDGSTIR 179 Query: 177 YNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYI 236 + +T DG + DE +M+ G + TF IST GF + + Sbjct: 180 SFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 Query: 237 DSMKHKIAS-VLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPM-----LHKPLSEYA 290 + A VLSG+ K R F F + D+ +EVDD N W K+NP+ LH +S+Y Sbjct: 240 FQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYL 299 Query: 291 RTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQM 350 T L+ + D N F R + L+ WK T++ P++ Q Sbjct: 300 TTKLA---QARADGSLNAKLVKNFNIWRQATEDSYLD--FDAWKAAELTDK--PDIRGQR 352 Query: 351 CIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-RQGFLDDV----KLEPPIKEWEKM 404 G+D D ++ L + + + WL G++FV +G +D+ +++ E Sbjct: 353 AWIGIDVGRTSDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 Query: 405 GLLTIVDDDVIEIEYIVDWFLKAKEK--YGLEKVVADNYRTDIVRRAFEAAGIELDVIRN 462 G ++ ++ +I+ + + +W E+ ++ ++ D Y+ + A E E +++ Sbjct: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQV 471 Query: 463 PKAIHGLLAP----RIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRR 518 + L P R D I + + + D+ +M+ N + D N I K++ Sbjct: 472 RQGTLTLSMPTKQFRDDVIGGR--IKHSDNRIMQAAAMNAV--LMSDNNGVRINKNKYAN 527 Query: 519 KTDGFMAFVHA 529 K D A + A Sbjct: 528 KIDMIDATLDA 538 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 83.6 bits (205), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 119/527 (22%), Positives = 208/527 (39%), Gaps = 60/527 (11%) Query: 44 FDEQKIEDCIKFIE-------KWYFPTL-----PFQRFIIANIF-LIDKNTDEAFFTEFA 90 FD+ E KFI+ +W F + P+Q FI+ F + K T F E Sbjct: 53 FDKDMAEKAAKFIQLLPHTKGEWAFKRMLITLEPWQLFIVCCAFGWVQKGTKLRRFREVY 112 Query: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNK 150 + R GK+ + + ++ + T E+ + S + + K +++ R + KR Sbjct: 113 TEIPRKNGKSAISAGVALYCFT---CDNEFGAEVYSGATTE-KQAWEVFRPARLMCKRTP 168 Query: 151 TGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVK 210 EV+ + + NR R+ DG C I DE H + Sbjct: 169 L-LVEAFGIEVNASNL-NRPEDGA-RFEPLIGNPGDGASPHCAIVDEYHEHPTDALYTTM 225 Query: 211 RGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVD 270 G+G ++ + I+T G+ +G + ++ +L+G V N+ LF +D+ + Sbjct: 226 LTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNNELFGVIYTVDEGDDWT 285 Query: 271 DRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV- 329 D + EKANP + +S Y LLS + N N + F TK +N+ Sbjct: 286 DPKVLEKANPNIG--VSVYRDFLLSQQQRAIN----NARHAGVFKTKHLNVWVAARTAFF 339 Query: 330 -IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGF 388 + W+ + + Q C+ D A D S+ LF + D +S + + Sbjct: 340 NLVSWQNCEDKTLTLELFEGQPCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFW 399 Query: 389 L-----------DDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVV 437 + +D + ++W +MG LT+ D ++ YI++ +AK L V Sbjct: 400 VPYDTVYSVEKNEDRRTAERFQKWVEMGFLTVTDGAEVDYRYILE---EAKAANKLNPV- 455 Query: 438 ADNYRTDIVRRAFEAAGIELDVI---RNPKAI----HGLLAP--RIDTIFAKHNVIYGDD 488 ++ F A G+ D+ NP I + P ++ + + Sbjct: 456 -----SESPIDPFGATGLSHDLADENLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGN 510 Query: 489 PLMRWFTNNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAFVHALYRA 533 P+M W NV K P GN + +K K++ K DG +A + A+ RA Sbjct: 511 PIMTWCIGNVVGKTIP-GNDDVVKPIKEQAENKIDGAVALIMAVGRA 556 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 118/531 (22%), Positives = 207/531 (38%), Gaps = 68/531 (12%) Query: 44 FDEQKIEDCIKFIE-------KWYFPTLP-----FQRFIIANIF-LIDKNTDEAFFTEFA 90 FD+ E KFI+ +W F +P +Q F+I F ++K + F E Sbjct: 53 FDKDLAERVAKFIQLLPHTKGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVY 112 Query: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNK 150 + R GK+ + + ++ + E+ + S + + K +++ R + KR Sbjct: 113 TEIPRKNGKSAISAGVALYC---FACDNEFGAEVYSGATTE-KQAWEVFRPARLMCKRTP 168 Query: 151 TGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVK 210 T EV+ + + NR R+ DG C + DE H + Sbjct: 169 M-LTEAFGIEVNASNM-NRPEDGA-RFEPLIGNPGDGSSPHCAVVDEYHEHATDALYTTM 225 Query: 211 RGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVD 270 G+G ++ + I+T G+ +G + ++ +L+G V N LF +D+ + Sbjct: 226 LTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWT 285 Query: 271 DRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKV- 329 D + EKANP + +S Y LLS + N+ F TK +N+ V Sbjct: 286 DPQVLEKANPNIG--VSVYREFLLSQQQRAKNNARLANV----FKTKHLNI-WVSARSAY 338 Query: 330 --IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQG 387 + W+ + + + Q CI D A D S+ L+ + D +S + Sbjct: 339 FNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRF 398 Query: 388 FL-----------DDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKV 436 ++ +D + ++W +MG+LT+ D ++ YI LE+ Sbjct: 399 WVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYI------------LEEA 446 Query: 437 VADNYRTDIVRR---AFEAAGIELDVI---RNPKAIHGLLAPRIDTIFAKHNVI------ 484 A N + + F A G+ D+ NP I A D + I Sbjct: 447 KAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIVQNFANMSDPMKELEAAIESGRFH 506 Query: 485 YGDDPLMRWFTNNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAFVHALYRA 533 + +P+M W NV K P GN + +K K++ K DG +A + + RA Sbjct: 507 HDGNPIMTWCIGNVVGKNMP-GNDDLVKPVKEQAENKIDGAVALIMTIGRA 556 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 74.7 bits (182), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 112/494 (22%), Positives = 205/494 (41%), Gaps = 55/494 (11%) Query: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 FQ F+ ANIF K + A F + I + R K+ ++ ++ F + G ++ I Sbjct: 81 FQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCT--FLGDEKQRAYI 138 Query: 125 VSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKT 184 + +Q+ ++ ++ + ++ + GK +A + I + V+ + KT Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLE-GKWKEAYSTIE----IFKNGSVVVPLSKEARKT 193 Query: 185 KDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIA 244 DG I DE H E+ +V G+ +K F I+T GF ++ Sbjct: 194 GDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVS 253 Query: 245 SVL--SGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYN 302 +L S V+N F C+L+ ++ D + W KANP++ T +E + Sbjct: 254 DILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVA--------TYEEGLEGIRS 305 Query: 303 DLPFNRSNKPE----FITKRMNL-------PEVDLEKVIAPWKEILATNREIPNLD---N 348 DL ++PE F+TK MN+ +D+ K W++ E+ LD Sbjct: 306 DLKVAL-DRPEKMRAFLTKNMNIWVDKKDNGYMDMSK----WQKC-----EVDTLDFSGA 355 Query: 349 QMCIGGLDFANIRDFASVGLLFRKND-DYIWLGHSFVRQGFLDDVKLEPPIKE--WEKMG 405 + IGG D + D SVG + ++ D+I HSF+ + L + ++ W + G Sbjct: 356 TLWIGG-DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQG 414 Query: 406 LLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKA 465 LT+ ++++ + W + +++ D + + + E G + P+ Sbjct: 415 YLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQR 472 Query: 466 IHGLLAPRI---DTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGN---KEYIKKDEVRRK 519 I L P + ++ K V + DP++ W NN VK+ N + I K+ + Sbjct: 473 IANLSIPTKNFREKVYEK-KVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 520 TDGFMAFVHALYRA 533 AF A+Y A Sbjct: 532 AAVLNAFARAMYGA 545 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 73.6 bits (179), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 111/494 (22%), Positives = 204/494 (41%), Gaps = 55/494 (11%) Query: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 FQ F+ ANIF K + A F + I + R K+ ++ ++ F + G ++ I Sbjct: 81 FQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCT--FLGDEKQRAYI 138 Query: 125 VSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKT 184 + +Q+ ++ ++ + ++ + GK +A + I + V+ + KT Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLE-GKWKEAYSTIE----IFKNGSVVVPLSKEARKT 193 Query: 185 KDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIA 244 DG I DE H E+ +V G+ +K F I+T GF ++ Sbjct: 194 GDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVS 253 Query: 245 SVL--SGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYN 302 +L S V+N F C+L+ ++ D + W KANP++ T +E + Sbjct: 254 DILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVA--------TYEEGLEGIRS 305 Query: 303 DLPFNRSNKPE----FITKRMNL-------PEVDLEKVIAPWKEILATNREIPNLD---N 348 DL ++PE F+TK MN+ +D+ K W++ E+ D Sbjct: 306 DLKVAL-DRPEKMRAFLTKNMNIWVDKKDNGYMDMSK----WQKC-----EVDTFDFSGA 355 Query: 349 QMCIGGLDFANIRDFASVGLLFRKND-DYIWLGHSFVRQGFLDDVKLEPPIKE--WEKMG 405 + IGG D + D SVG + ++ D+I HSF+ + L + ++ W + G Sbjct: 356 TLWIGG-DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQG 414 Query: 406 LLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKA 465 LT+ ++++ + W + +++ D + + + E G + P+ Sbjct: 415 YLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQR 472 Query: 466 IHGLLAPRI---DTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGN---KEYIKKDEVRRK 519 I L P + ++ K V + DP++ W NN VK+ N + I K+ + Sbjct: 473 IANLSIPTKNFREKVYEK-KVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 520 TDGFMAFVHALYRA 533 AF A+Y A Sbjct: 532 AAVLNAFARAMYGA 545 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 73.2 bits (178), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 109/491 (22%), Positives = 202/491 (41%), Gaps = 49/491 (9%) Query: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 FQ F+ ANIF K + A F + I + R K+ ++ ++ F + G ++ I Sbjct: 81 FQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCT--FLGDEKQRAYI 138 Query: 125 VSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKT 184 + +Q+ ++ ++ + ++ + GK +A + I + V+ + KT Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLE-GKWKEAYSTIE----IFKNGSVVVPLSKEARKT 193 Query: 185 KDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIA 244 DG I DE H E+ +V G+ +K F I+T GF ++ Sbjct: 194 GDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVS 253 Query: 245 SVL--SGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYN 302 +L S V+N F C+L+ ++ D + W KANP++ T +E + Sbjct: 254 DILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVA--------TYEEGLEGIRS 305 Query: 303 DLPFNRSNKPE----FITKRMNL-------PEVDLEKVIAPWKEILATNREIPNLDNQMC 351 DL ++PE F+TK MN+ +D+ K W++ + + Sbjct: 306 DLKVAL-DRPEKMRAFLTKNMNIWVDKKDNGYMDMSK----WQKCEVDTXDFSGA--TLW 358 Query: 352 IGGLDFANIRDFASVGLLFRKND-DYIWLGHSFVRQGFLDDVKLEPPIKE--WEKMGLLT 408 IGG D + D SVG + ++ D+I HSF+ + L + ++ W + G LT Sbjct: 359 IGG-DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLT 417 Query: 409 IVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHG 468 + ++++ + W + +++ D + + + E G + P+ I Sbjct: 418 LTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQRIAN 475 Query: 469 LLAPRI---DTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGN---KEYIKKDEVRRKTDG 522 L P + ++ K V + DP++ W NN VK+ N + I K+ + Sbjct: 476 LSIPTKNFREKVYEK-KVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAV 534 Query: 523 FMAFVHALYRA 533 AF A+Y A Sbjct: 535 LNAFXRAMYGA 545 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 111/494 (22%), Positives = 204/494 (41%), Gaps = 55/494 (11%) Query: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 FQ F+ ANIF K + A F + I + R K+ ++ ++ F + G ++ I Sbjct: 81 FQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCT--FLGDEKQRAYI 138 Query: 125 VSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKT 184 + +Q+ ++ ++ + ++ + GK +A + I + V+ + KT Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLE-GKWKEAYSTIE----IFKNGSVVVPLSKEARKT 193 Query: 185 KDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIA 244 DG I DE H E+ +V G+ +K F I+T GF ++ Sbjct: 194 GDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVS 253 Query: 245 SVL--SGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYN 302 +L S V+N F C+L+ ++ D + W KANP++ T +E + Sbjct: 254 DILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVA--------TYEEGLEGIRS 305 Query: 303 DLPFNRSNKPE----FITKRMNL-------PEVDLEKVIAPWKEILATNREIPNLD---N 348 DL ++PE F+TK MN+ +D+ K W++ E+ D Sbjct: 306 DLKVAL-DRPEKMRAFLTKNMNIWVDKKDNGYMDMSK----WQKC-----EVDTFDFSGA 355 Query: 349 QMCIGGLDFANIRDFASVGLLFRKND-DYIWLGHSFVRQGFLDDVKLEPPIKE--WEKMG 405 + IGG D + D SVG + ++ D+I HSF+ + L + ++ W + G Sbjct: 356 TLWIGG-DLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQG 414 Query: 406 LLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKA 465 LT+ ++++ + W + +++ D + + + E G + P+ Sbjct: 415 YLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQR 472 Query: 466 IHGLLAPRI---DTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGN---KEYIKKDEVRRK 519 I L P + ++ K V + DP++ W NN VK+ N + I K+ + Sbjct: 473 IANLSIPTKNFREKVYEK-KVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 520 TDGFMAFVHALYRA 533 AF A+Y A Sbjct: 532 AAVLNAFSRAMYGA 545 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 23/269 (8%) Query: 42 VYFDEQKIEDCIKFIEKWY-------FPTLPFQRFIIANIFLIDKNTDEAF--FTEFAIF 92 VY E K D I FIE +P FQ+FII N++ K TD + F + I Sbjct: 58 VYLPE-KAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMIS 116 Query: 93 MGRGGGKNGLISAISDFLSTPLHG---VKEYHISIVSNSEEQAKTSFDEIRNVLMENKRN 149 + R GK LI+ I L L G + +N QAK ++D + L + R Sbjct: 117 VARKNGKTILIAGI--LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQL-SSLRA 173 Query: 150 KTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 K KA ++ + ++ N +S IR + +T DG + DE EM+ + Sbjct: 174 KDVDVRKAT-KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLEL 232 Query: 210 KRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHK-IASVLSGKVKNSRLFPFYCKLDDPKE 268 G G+ N IST G + + ++++ I +L G++ + F + + D+ +E Sbjct: 233 LESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEE 292 Query: 269 VDDRNMWEKANPM-----LHKPLSEYART 292 + D + W K+NP+ LH L +Y RT Sbjct: 293 IKDESNWIKSNPILEVEALHDKLMDYLRT 321 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 70.1 bits (170), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 153/352 (43%), Gaps = 45/352 (12%) Query: 45 DEQKIEDCIKFIEKWY-------FPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGG 97 D +K E FIE++ F +P+ + ++ ++ DE F + +GR Sbjct: 33 DYKKAEKIFDFIEEFMTLPNNERFKIIPYHKAVLTLMYCTPYQIDE-----FVVIVGRSN 87 Query: 98 GKNGL---ISAISDFLSTPLHGVKEYHISIVSNSEEQAKT----SFDEIRNV--LMENKR 148 K+ L I+ I FL + V I++++ ++QA+ F + N + NK Sbjct: 88 AKSILDVMIALIELFLFPKPNSV----IALMATKKDQAEKILMKHFRAMGNCQGTIINKF 143 Query: 149 NKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVN 208 K K V I+ ++ + I SN T DGGRE VI DE F ++ Sbjct: 144 KNQFKLNKEQILVKDNSIL-KSKGTEISIYASNEDTLDGGREQLVIIDEFGAFKKNPLIT 202 Query: 209 VKRGGLGKKKNRRTFYIS-TDGFVRDG-YIDSMKHKIASVLSGKVKNSRLFPFYCKLDDP 266 +++ G +KN+ T +IS T+ +R G Y D ++ V K + + FY LDD Sbjct: 203 IRQ---GLRKNKGTLFISTTNNVIRGGAYDDELESWKEWV---KDDDFSHWVFYYALDDY 256 Query: 267 KEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDL 326 EV D + + KANP L LS L I++++ N + ITKR NL D Sbjct: 257 DEVKDSSKYIKANPALGYTLS------LEDIQKDFIGAIGNPVKMAKIITKRFNLSMTDS 310 Query: 327 EKVIAPWKEILATNREIPNLD--NQMCIGGLDFANIRDFASVGLLFRKNDDY 376 + + + L +P LD ++ G DF+ D + +R+N Y Sbjct: 311 TTIFS---KQLVDKCLVPPLDFSGRLVAIGSDFSVRGDVWGTVIGYRENGHY 359 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 68.9 bits (167), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 147/350 (42%), Gaps = 21/350 (6%) Query: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 FQ FI ANI+ K + A F + I + R K+ ++ I+ + P +++ + I Sbjct: 71 FQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKHRVFI 128 Query: 125 VSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIR-YNTSNTK 183 S EQ+ DE+ ++E + K Y + ++ T S+I+ + K Sbjct: 129 AGWSREQS----DEVYQAILEQLHH--APILKGKYTSANGRVKKYKTNSIIQPLSREARK 182 Query: 184 TKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKI 243 DG I DE H E+ +V G+ +++ I+T GF + Sbjct: 183 LGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYT 242 Query: 244 ASVLSGKV--KNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEY 301 + +L + +N F C+LD ++ D + W KANP++ E +L S ++ Sbjct: 243 SKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV-ATYPEGMESLRSALKVAL 301 Query: 302 NDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIR 361 RS F+TK MN + + A + EIP+L GLD + Sbjct: 302 EVPEKMRS----FLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTT 357 Query: 362 DFASVGLLFRKNDDYIWLG-HSFVRQGFLDD--VKLEPPIKEWEKMGLLT 408 D SVG + + D + ++G HSF+ ++ + P W +MG +T Sbjct: 358 DLTSVGYVAVQ-DGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 67.0 bits (162), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 105/518 (20%), Positives = 203/518 (39%), Gaps = 43/518 (8%) Query: 44 FDEQKIEDCIKFIE-------KWYFPTLP-----FQRFIIANIF-LIDKNTDEAFFTEFA 90 FD+ K E KFI+ +W F +P +Q F I +F + K + F E Sbjct: 47 FDKDKAERVAKFIQLLPHTKGEWAFKRMPITLEPWQLFCICVVFGWVRKKSGLRRFREAY 106 Query: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNK 150 + R GK+ + + + ++ E+ + S + + K +++ R + +R + Sbjct: 107 NEIPRKNGKSAMSAGVGLYM---FACDDEFGAEVYSGATTE-KQAWEVFRPARLMAQRTE 162 Query: 151 TGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVK 210 + +Q+ ++R R+ DG C + DE H + Sbjct: 163 PLREAFGIEVHAQS--MSRPEDGA-RFEPLIGDPGDGASPSCALIDEYHEHQTDALYQTM 219 Query: 211 RGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVD 270 + G+G ++ F I+T G+ +G + ++ +L G V N LF +DD + Sbjct: 220 QTGMGARRQPLIFGITTAGYNIEGPCYDKRREVIEMLEGIVPNDELFGIIYTIDDGDDWT 279 Query: 271 DRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNL--PEVDLEK 328 D + KANP + +S Y+ LLS N N F TK +N+ D Sbjct: 280 DPAVLRKANPNMG--ISVYSDYLLSQQRAAIN----NPRKVGVFKTKHLNIWVAAKDAFF 333 Query: 329 VIAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----YIWLGHSF- 383 + W++ + + + CI D A D ++ LF + D Y + F Sbjct: 334 NLVNWQKCEDRSLTLERFEGHTCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFF 393 Query: 384 -----VRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVA 438 + + D + ++W + G +T+ D I+ I++ +A +E+ Sbjct: 394 VPYDTIYSADVTDSRTAERYQKWVEGGFITVTDGAEIDYREILESAKEANRLNAVEESPI 453 Query: 439 DNY-RTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNN 497 D + T++ + + +I+N + + ++ + +P+M W +N Sbjct: 454 DPHGATNLSHHLADENLNPITIIQNYTNMSDPMK-ELEAAIEAGRFHHDGNPVMTWCISN 512 Query: 498 VAVKIKPDGNKEYIK--KDEVRRKTDGFMAFVHALYRA 533 V K P G+ + ++ K K DG +A + A+ R Sbjct: 513 VIGKHIP-GDDDVVRPIKQGNENKIDGAVALIMAIGRC 549 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 67.0 bits (162), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 111/521 (21%), Positives = 205/521 (39%), Gaps = 57/521 (10%) Query: 44 FDEQKIEDCIKFIE-------KWYFPTL-----PFQRFIIANIF-LIDKNTDEAFFTEFA 90 FDE K + +KF++ KW P+Q FI ANIF + ++T + F E Sbjct: 48 FDEAKADRAVKFMQLMPHTKGKWSASKSKLVFEPWQVFIEANIFGWVKRDTGKRRFREAY 107 Query: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLM-----E 145 + R GK+ ++A +L G + + +E+QA F+ R M E Sbjct: 108 EEIPRKNGKSARLAARGIYLFAA-DGESGAEVYSGATTEKQA---FEVFRPAWMMAHKLE 163 Query: 146 NKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPE 205 N RN+ G + + + + ++ T DG + DE H Sbjct: 164 NLRNRFGIELSGNQKNPGPMFV---MEDMSKFETVIGNPGDGASPHAALVDEYHEHDTDA 220 Query: 206 MVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDD 265 +V+ + G+G ++ I+T G G + + +L G+ + +F +D+ Sbjct: 221 LVDTMQTGMGAREQPLLSIITTAGSNLGGPCHEKRRDVIRILEGQTIDETIFGIIYTIDE 280 Query: 266 PKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVD 325 DD KANP + +S + LL+ +++ + S + F TK +N V Sbjct: 281 DDPWDDPASLIKANP--NYGVSVFPDFLLAQLQQAKR----SASKQNAFRTKHLN-QWVG 333 Query: 326 LEKVIAPWKEILATNRE-----IPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLG 380 V W +LA R+ I ++ C LD A+ +D A++ +LF K G Sbjct: 334 ARTV---WMNMLAWQRQKRDFTIADMAGCRCWMALDLASKKDVAALVMLFEK------AG 384 Query: 381 HSFVRQGFLDDVKLEPPIKEWEKMGL---LTIVDDDVIEIEYIVDWFLKAKEKYGLEKVV 437 + F ++++ L L + + + +I L ++ L+ Sbjct: 385 QFYCIPRFYAPEAAAEENEKYQNFALEGHLVLTPGSMTDYAFIEADILDLAKQIDLQDAA 444 Query: 438 ADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAP--RIDTIFAKHNVIYGDDPLMRWFT 495 D+++ + + I V+ + + + P ++ + + +P+M W Sbjct: 445 FDDWQANYLITRLSNTSIP--VVDFNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMM 502 Query: 496 NNVAVKIKPDGNKEYIKKD---EVRRKTDGFMAFVHALYRA 533 NVA KI N Y +K+ + K DG + + A+ RA Sbjct: 503 GNVAAKIDAKENI-YPRKENDNDPNCKIDGPVTLIMAMGRA 542 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 65.9 bits (159), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/384 (21%), Positives = 167/384 (43%), Gaps = 26/384 (6%) Query: 179 TSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDS 238 T NTK +G V+ DE+H +M + + ++ IST G + Sbjct: 201 TKNTKGLEGKNPYFVLNDELHAQENMDMYDNLKSAQISREQPMMLNISTAG--KGASSVG 258 Query: 239 MK-HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTI 297 M+ +K A ++ + LF + + + +DR +W+ NP + ++ + + Sbjct: 259 MRVYKYAKLVLENDDDDSLFVAIWEPNKNYDWEDRKVWKMVNPNIGVSVT------MEQL 312 Query: 298 EEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDF 357 E E+ + +K EF++K +N+ + + +++ +L ++C GLD Sbjct: 313 EIEFKKAKQSAHSKAEFLSKHLNVFVNGADNYFEHDQVQHVLVKDLGDLTGEICYLGLDL 372 Query: 358 ANIRDFASVGLLFRKNDDYIWLGHSFVR---QGFLDDVKLE-------PPIKEWEKMGLL 407 + D V L F +DD G S ++ FL + ++ P + + G Sbjct: 373 SKTTDLTCVSLNFPSHDDE---GRSIIKVKQMYFLPNENIDFKEKEDNVPYTDMVERGFA 429 Query: 408 TIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIE-LDVIRNPKAI 466 T D +I+ + I+++ ++ + Y ++++ D + + E G+E + V + P + Sbjct: 430 TFCDGKMIDQDQIMEYIVECMDLYDVQQINYDPAMSQKLIEKLENLGLECIAVNQYPNVM 489 Query: 467 HGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDGFMAF 526 + +L I+ K + D+PL + NV V +G K K+ + ++K DGF+AF Sbjct: 490 NAMLDDSEILIYEKR--LITDNPLFVYCALNVVVVTNINGMKAPSKR-QSKKKIDGFVAF 546 Query: 527 VHALYRADDIVDKDMSKALDALMS 550 + A ++D + +D L+ Sbjct: 547 LCAHKETMMVMDSITEEGMDELIG 570 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 63.5 bits (153), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 98/405 (24%), Positives = 157/405 (38%), Gaps = 59/405 (14%) Query: 44 FDEQKIEDCIKFIEKWYFP----------TLPFQRFIIANIF-LIDKNTDEAFFTEFAIF 92 FD +K + I F E F FQ FI+ +IF + K T F + + Sbjct: 46 FDLEKALESIDFFEDLRFTDGEIAGQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQ 105 Query: 93 MGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTG 152 + R K+ L S I L+ + + +QA+ + + R + Sbjct: 106 LARKNAKSLLNSGIGIKLAA-FDKYPNAQVYCTATKMKQARIVWKQARKFI--------- 155 Query: 153 KTPKAPYEVSQTKIINRATKSVIRYNT-----SNTKTKDGGREGCVIFDEIHYFFGPEMV 207 + E+ + K + +S+I +T T DG I DE H +MV Sbjct: 156 EIEPDLREIFKIKDHDAIIESLINGGEIMALGRDTGTIDGFDPHGGIIDEYHSHKTNQMV 215 Query: 208 NVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPK 267 + G + I+T GF +G +VL G V N F + ++D Sbjct: 216 KLLEDGSVNQAESLISIITTAGFNLNGPCYKEWEYCKNVLEGIVNNDEYFIYIAQMDVED 275 Query: 268 EVDDRNMWEKANPM---LHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNL-PE 323 ++ D N W KANP+ L K L R + ++ +DL F+TK +N+ E Sbjct: 276 DIWDPNNWLKANPLVAKLPKGLENLKRFAEESKQKGGDDL-------KNFLTKSLNIWYE 328 Query: 324 VDLEKVIAP--WKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLF---------RK 372 ++ I P WK + A+ + N + C GLD ++ D S+ L+F K Sbjct: 329 FSNDQYIGPSVWK-VGASKLTLENFKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEK 387 Query: 373 NDDYIWLGHSFVRQGFL------DDVKLEPPIKEWEKMGLLTIVD 411 Y HSF+ + + DDV P W + GLLT+ + Sbjct: 388 VRKYFIHSHSFIPKRRVAEHIQSDDV----PYDVWIENGLLTVTE 428 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 63.2 bits (152), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 107/487 (21%), Positives = 184/487 (37%), Gaps = 36/487 (7%) Query: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHIS 123 P+Q FI +IF + K + F E I + R GK+ + + + + G + Sbjct: 82 PWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIY-TFCADGENSAEVY 140 Query: 124 IVSNSEEQAKTSFDEIRNVLMENKRNKTGKTP--KAPYEVS-QTKIINRATKSVIRYNTS 180 + + QAK F R + + P ++ +++S T + R SV + Sbjct: 141 CGATTMAQAKKVFTPARQM--------ASRLPALRSRFDISVWTDSLTRPDGSV--FAPM 190 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 K DG C I DE H M G+G + T I+T G + Sbjct: 191 AGKPGDGDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSSLESPCYDKD 250 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEE 300 ++ + G N RLF +LD + D KANP L+ + +Y+ L + E Sbjct: 251 KEVKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSV-KYSD--LVELLEV 307 Query: 301 YNDLPFNRSNKPEFITKRMNLPEVDLEKV--IAPWKEILATNREIPNLDNQMCIGGLDFA 358 +P + F TKR+N+ + WK N ++ + N C GLD A Sbjct: 308 AKQVPRKVN---AFKTKRLNIWVSGKSAFYNMEQWKAAEDKNLKLEDFANDTCNVGLDLA 364 Query: 359 NIRDF-ASVGLLFR----KNDDYI-----WLGHSFVRQGFLDDVKLEPPIKEWEKMGLLT 408 D A + L R K Y W+ + +K +++ +MG L Sbjct: 365 KKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLLKTADRYQKFYEMGALE 424 Query: 409 IVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHG 468 D + I+ L + + ++++ D +R E G + IR Sbjct: 425 ATDGAEADYREILASILDMQGENRIDEIDIDPAGATALRHQLEDYGFTVVDIRQDYTNMS 484 Query: 469 LLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAF 526 ++ A + +P++ W +NV K P G+ + ++ K + + K DG A Sbjct: 485 PAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIP-GSDDLVRPTKGDNQSKIDGATAL 543 Query: 527 VHALYRA 533 +A+ RA Sbjct: 544 FNAMTRA 550 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 117/523 (22%), Positives = 204/523 (39%), Gaps = 55/523 (10%) Query: 44 FDEQKIEDCIKFIE-------KWYFP----TL-PFQRF-IIANIFLIDKNTDEAFFTEFA 90 FD + E + IE +W F TL P+Q+F ++A ++K T + F E Sbjct: 52 FDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESY 111 Query: 91 IFMGRGGGKNGLISA--ISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKR 148 + R GK+ + I F+ G + Y + +E+QA F R + KR Sbjct: 112 WEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVY---AGATTEKQAWEVF---RPAQLMVKR 165 Query: 149 NKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVN 208 + A EV+ + + A S R+ DG C I DE H + Sbjct: 166 SPM-LIDSAGIEVNASNMNKPADGS--RFEPIIGNPGDGASPSCAIVDEYHEHDSAALYE 222 Query: 209 VKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKE 268 G+G ++ F I+T G +G + ++ +L G V + LF + +D+ + Sbjct: 223 TMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDD 282 Query: 269 VDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEK 328 D + KANP + +S Y L S + F + F TK +N+ Sbjct: 283 WTDPRVLAKANPNIG--ISVYQDYLESQQQRAIKSARFTNT----FKTKHLNVWTSAKAG 336 Query: 329 V--IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----------Y 376 + WK + + + Q C+ LD A D S+ LF + D Sbjct: 337 YFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 Query: 377 IWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKV 436 W+ VR ++ ++ + W G L ++ D EI+Y D +AK+ L V Sbjct: 397 FWVPEDTVRN--TENRRMAERYQAWVNQGCL--LETDGAEIDY-RDILEEAKDANRLCPV 451 Query: 437 VAD----NYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMR 492 + T++ + + + +++N + + ++ + +P+M Sbjct: 452 QCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMK-ELEAAITSGRFHHDGNPIMT 510 Query: 493 WFTNNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAFVHALYRA 533 W +NV K P GN + ++ K K DG +A + A+ RA Sbjct: 511 WCVSNVIGKNLP-GNDDVVRPIKQGNDNKIDGAVALIMAVGRA 552 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 104/487 (21%), Positives = 187/487 (38%), Gaps = 37/487 (7%) Query: 65 PFQRF-IIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISA--ISDFLSTPLHGVKEYH 121 P+Q+F ++A ++K T + F E + R GK+ + + I F+ G + Y Sbjct: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIGMFVLDDEFGAEVY- 143 Query: 122 ISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSN 181 + +E+QA F R LM + + A EV+ + + S R+ Sbjct: 144 --AGATTEKQAWEVFRPAR--LMVKRSPEL--IVAADIEVNASNMNKPEDGS--RFEPLI 195 Query: 182 TKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKH 241 DG C I DE H + G+G ++ F I+T G +G + Sbjct: 196 GNPGDGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRR 255 Query: 242 KIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEY 301 ++ +L G V + LF + +D+ + D + KANP + +S Y L S + Sbjct: 256 QVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIG--ISVYQDYLESQQQRAI 313 Query: 302 NDLPFNRSNKPEFITKRMNLPEVDLEKV--IAPWKEILATNREIPNLDNQMCIGGLDFAN 359 F + F TK +N+ + WK + + + Q C+ LD A Sbjct: 314 KSARFTNT----FKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMAR 369 Query: 360 IRDFASVGLLFRKNDD----------YIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTI 409 D S+ LF + D W+ VR ++ ++ + W G L Sbjct: 370 KLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEETVRN--TENRRMAERYQAWVNQGCLLE 427 Query: 410 VDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIE-LDVIRNPKAIHG 468 D I+ I++ A ++ D + + E G+ + +++N + Sbjct: 428 TDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLEDEGLTPVTIVQNYTNMSD 487 Query: 469 LLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAF 526 + ++ + +P+M W +NV K P GN + ++ K K DG +A Sbjct: 488 PMK-ELEAAITAGRFHHDGNPIMTWCVSNVIGKNLP-GNDDVVRPIKQGNDNKIDGAVAL 545 Query: 527 VHALYRA 533 + A+ RA Sbjct: 546 IMAIGRA 552 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/363 (20%), Positives = 141/363 (38%), Gaps = 25/363 (6%) Query: 186 DGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKHKIAS 245 DG C I DE H G+G ++ F I+T G +G + ++ Sbjct: 201 DGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGANIEGPCYDKRRQVIE 260 Query: 246 VLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLP 305 +L G V + LF + +D+ + D + KANP + +S Y L S + Sbjct: 261 MLEGTVPDDELFGWIWTIDEDDDWTDPRVLAKANPNIG--ISVYQEYLESQQQRAIKSAR 318 Query: 306 FNRSNKPEFITKRMNLPEVDLEKV--IAPWKEILATNREIPNLDNQMCIGGLDFANIRDF 363 F + F TK +N+ + WK + + + Q C+ LD A D Sbjct: 319 FTNT----FKTKHLNVWTSAKAGYFNLEDWKACEDRSLSLEQFEGQDCVLALDMARKLDL 374 Query: 364 ASVGLLFRKNDD----------YIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDD 413 S+ LF ++ D W+ VR ++ ++ + W G L D Sbjct: 375 NSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRN--TENRRMAERYQAWVNHGFLIETDGA 432 Query: 414 VIEIEYIVDWFLKAKEKYGLEKVVADNY-RTDIVRRAFEAAGIELDVIRNPKAIHGLLAP 472 I+ I++ +A + ++ D + T++ + + + +++N + + Sbjct: 433 EIDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMK- 491 Query: 473 RIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAFVHAL 530 ++ + +P+M W +NV K P GN + ++ K K DG +A + A+ Sbjct: 492 ELEAAITSRRFHHDGNPIMTWCISNVIGKNLP-GNDDVVRPVKQGNDNKIDGAVALIMAV 550 Query: 531 YRA 533 RA Sbjct: 551 GRA 553 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 61.6 bits (148), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 35/336 (10%) Query: 65 PFQRFIIANI-FLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHIS 123 + +F++ NI K+T+ F I + R K+ L + ++ + G + Sbjct: 81 SWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEAGMAGY-EIGAKGYNAAEVY 139 Query: 124 IVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSNT- 182 + +QAK F+E LM K K ++ +Q I ++ + S I++ + Sbjct: 140 TLGVERDQAKIVFEEWE--LM------ASKPLKKRFKFTQKVIKHKKSNSFIKHLSKKAG 191 Query: 183 KTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKH- 241 KT DG + DE H +M +V + G+ + I+T G + Y ++ + Sbjct: 192 KTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAG---EDYEETACYY 248 Query: 242 ---KIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIE 298 S+L G +N + F C+L+D + D W KANP+ L Y + S Sbjct: 249 EYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANPV----LCTYEEGIESM-- 302 Query: 299 EEYNDLPFNRSNKP---EFITKRMNLPEVDLEKV---IAPWKEILATNREIPNLDNQMCI 352 + +L N SN+ EF+TK N+ EK + WK N + C Sbjct: 303 RQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWK-ACKENITLEKFRGHDCY 361 Query: 353 GGLDFANIRDFASVGLLFRKNDD----YIWLGHSFV 384 G+D + D S+ F D+ Y G SF+ Sbjct: 362 IGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFI 397 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 90/404 (22%), Positives = 162/404 (40%), Gaps = 53/404 (13%) Query: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAIS--DFLSTPLHGVKEYH 121 P+Q+F+ N+F +K T+ F E IF+ R GK ++++ + G K Y Sbjct: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTY- 142 Query: 122 ISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSN 181 IV+NS +Q + SF + +E RN K + ++ + +N Sbjct: 143 --IVANSLKQTQESFGFL-TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIAN 199 Query: 182 TKTK-DGGREGCVIFDEIHYF--FGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDS 238 K D +I DEIH + G + + + +N+ IST G + +G++ Sbjct: 200 QDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQ 259 Query: 239 MKHKIASVLSGKVKNS---RLFPFYCKLDDPKE-------------VDDRNMWEKANPML 282 + VLSG +K+ F F C + ++ +DD + P L Sbjct: 260 RVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSL 319 Query: 283 HKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNL------PEVDLEKVIAPWKEI 336 + TL I E L K EF+ K +N+ D+++ K+ Sbjct: 320 -----DVTVTLDDLITEARQAL-LEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQH 373 Query: 337 LATNREIPNLDNQMCIGGLDFANIRDFASVGLL----FRKNDDYIWLGHSF------VRQ 386 T E+ L GG D + + D + L ++ I + H+F + + Sbjct: 374 SWTMEELSKLP-ITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIEK 432 Query: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEK 430 DD+ P+ EW++ G T+ + + + + IV WF++ ++K Sbjct: 433 AQEDDI----PLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK 472 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 50.1 bits (118), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 117/510 (22%), Positives = 200/510 (39%), Gaps = 64/510 (12%) Query: 64 LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKN---GLISAISDFLSTPLHGVKEY 120 + +Q+FI+ +F F+ + +GRG GK +++A S F+ + G+ Sbjct: 99 MAWQKFILCMLFGWRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIES--LGLSNQ 156 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVS--QTKIINRATKSVIRYN 178 + S + +Q I++++ + +N+ K+ E+ ++I +A +V+R Sbjct: 157 DYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETELGLHSDQVIMKANNNVLRAI 216 Query: 179 TSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTD------GFVR 232 ++ + D IFDEI + V+ G K NR+ IST F Sbjct: 217 SAESGQYDSFHFTTAIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFRE 276 Query: 233 DGYIDSMKHKIASVLSGKVKNSRLFPFYCKL----DDPKEVDDRNMWEKANPMLHKPLSE 288 D I M+ + +SR Y L D+ +EV W K+NP+L L + Sbjct: 277 DQRI--MQQAMED------DDSRDADTYLCLVWSQDNLEEVFKPETWAKSNPLLD--LEQ 326 Query: 289 YARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLD- 347 L+ + ++ D N +F K MN + K+I N IP D Sbjct: 327 ERENLMKGLMDK-RDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDI--ENAVIPEFDR 383 Query: 348 -NQMCIGGLDFANIRDFASVGLLFRKNDDYIWLG-----------HSFV--RQGFLDDVK 393 + GLD + D ++G + Y +LG HSF+ +Q + K Sbjct: 384 RGKRVYVGLDASMFSDNTAIGFV------YPYLGEDGSQKWHVEQHSFIPWQQAGSLEAK 437 Query: 394 LEPP---IKEWEKMGLLTIVD--DDVIEIEYIVDWFLKAKEKYGLEKVV--ADNYRTDIV 446 +E ++ E G TI +I E + WF+ E L+ V D + + Sbjct: 438 MEQDGVNYRDLEAKGFCTITSHPQGLINPEEVYRWFVDYVEDNALDVVFFGYDAMMINKI 497 Query: 447 RRAFEA-AGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVK---- 501 +A E+ + L IR + + T+F + N+ DD +MR N +K Sbjct: 498 IKALESNTSLPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNI 557 Query: 502 -IKPDGNKEYIKKDEVRRKTDGFMAFVHAL 530 I+ D K K D V D F ++A Sbjct: 558 GIQVDKMKSTYKIDVVDALIDAFYDGMYAF 587 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 49.3 bits (116), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 105/493 (21%), Positives = 184/493 (37%), Gaps = 62/493 (12%) Query: 65 PFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 PFQ+ I ++ TD A + + R GK GLI+ I V+ I Sbjct: 31 PFQKDFILAVYDNPAGTDMAILS-----IARKNGKTGLIAGILLAHLVGPEAVQNTQIVS 85 Query: 125 VSNSEEQAKTSFDEIRNVLMENKRNK--TGKTPKAPYEVSQTKIINRATKSVIRYNTSNT 182 + S EQA F+ ++ N + + TP S K+I + ++ Sbjct: 86 GALSREQAAIVFNLAVKMVNLNPKLQEIVHITP------SGKKLIGLPCNVEYKALSAEG 139 Query: 183 KTKDGGREGCVIFDEIHYFFGPE--MVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 KT G I DE GP+ ++ G +N IST + Sbjct: 140 KTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHENPLLIVISTQA--------AND 191 Query: 241 HKIASVLSGKVKNSRLFPFYCKL-DDPKEVD--DRNMWEKANPMLHKPLSE--YARTL-- 293 + S+ S+ C + + PK+ D R W ANP L SE AR Sbjct: 192 ADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEK 251 Query: 294 ---LSTIEEEYNDLPFNR--SNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDN 348 + + E + +L N+ S FI++ + W+ E+P Sbjct: 252 AGRMPSFENTFRNLNLNQRVSTVSPFISRSV-------------WE----LCGEMPINTP 294 Query: 349 QMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSF--VRQGFLDD-VKLE-PPIKEWEKM 404 + GLD + D ++ ++ + DD +W F Q L++ K + P W + Sbjct: 295 RKWYAGLDLSARNDLTAL-VIAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVRE 353 Query: 405 GLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPK 464 GLL ++ ++V + + L + D +R D R+ +A G+ L ++ + Sbjct: 354 GLLRTTPGASVDYSFVVADIAEIIGDFDLTSMAFDRWRIDQFRKDADAIGLSLPLVEFGQ 413 Query: 465 AIHGLLAPRIDT---IFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTD 521 + P +DT + V +G P++ N V GN++ + K + + D Sbjct: 414 GFKD-MGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRK-LDKSKATGRID 471 Query: 522 GFMAFVHALYRAD 534 G +A ++ A+ Sbjct: 472 GMVAMTMSVGAAN 484 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 47.4 bits (111), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 103/492 (20%), Positives = 183/492 (37%), Gaps = 62/492 (12%) Query: 66 FQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIV 125 FQ+ I ++ TD A + + R GK GLI+ I V+ I Sbjct: 32 FQKEFILAVYDNPAGTDMAILS-----IARKNGKTGLIAGILLAHLVGPEAVQNTQIVSG 86 Query: 126 SNSEEQAKTSFD-EIRNVLMENKRNKTGK-TPKAPYEVSQTKIINRATKSVIRYNTSNTK 183 + S EQA F+ ++ V + K + TP S K+I + ++ K Sbjct: 87 ALSREQAAIVFNLAVKMVNLNPKLQEIVHITP------SGKKLIGLPCNVEYKALSAEGK 140 Query: 184 TKDGGREGCVIFDEIHYFFGPE--MVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKH 241 T G I DE GP+ ++ G +N IST + Sbjct: 141 TTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHENPLLIVISTQA--------ANDA 192 Query: 242 KIASVLSGKVKNSRLFPFYCKL-DDPKEVD--DRNMWEKANPMLHKPLSE--YARTL--- 293 + S+ S+ C + + PK+ D R W ANP L SE AR Sbjct: 193 DLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKA 252 Query: 294 --LSTIEEEYNDLPFNR--SNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQ 349 + + E + +L N+ S FI++ + W+ E+P + Sbjct: 253 GRMPSFENTFRNLNLNQRVSTVSPFISRSV-------------WE----LCGEMPINTPR 295 Query: 350 MCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFV---RQGFLDDVKLE-PPIKEWEKMG 405 GLD + D ++ ++ + DD +W F ++ + K + P W + G Sbjct: 296 KWYAGLDLSARNDLTAL-VIAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVREG 354 Query: 406 LLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKA 465 LL ++ ++V + + L + D +R D R+ +A G+ L ++ + Sbjct: 355 LLRTTPGASVDYSFVVADIAEIIGDFDLTSIAFDRWRIDQFRKDADAIGLSLPLVEFGQG 414 Query: 466 IHGLLAPRIDT---IFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEVRRKTDG 522 + P +DT + V +G P++ N V GN++ + K + + DG Sbjct: 415 FKD-MGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGNRK-LDKSKATGRIDG 472 Query: 523 FMAFVHALYRAD 534 +A ++ A+ Sbjct: 473 MVAMTMSVGAAN 484 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 46.2 bits (108), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 115/515 (22%), Positives = 190/515 (36%), Gaps = 67/515 (13%) Query: 64 LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHIS 123 + +Q FI + IF + F+ I + R GK + +F Y I Sbjct: 101 MDWQLFIFSQIFAWFDLDNVPRFSNIIISIARSQGKTMIAGICLNF---------SYLIE 151 Query: 124 IVSNSEEQ---AKTSFDEIRNVLMENKRNKTGKTPKAPY----EVSQTKIINRATKSVIR 176 I+ S + + +FD+ + K P+ E +Q ++ +R KS++ Sbjct: 152 IIGQSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAEETQLQLYSREIKSLLD 211 Query: 177 YNTSNTKTKDGGREGC-----VIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFV 231 NT NT + + G+ + DE+ E ++ G + R IST Sbjct: 212 ANTINTISFESGKFDSKHFKLAVADEVGELRTDEGISKITSGQVNTEGSRFIEISTSYQT 271 Query: 232 RDGYIDSMKHKIASVLSGKVKNS---RLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSE 288 D + K+ ++ S +L + + D+ +EV W K+NP+L+ P E Sbjct: 272 PDVPFHQEQKKLIEIMERDFDRSGDDQLCLIWSQ-DNLEEVFKPETWAKSNPLLNHP--E 328 Query: 289 YARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLD- 347 L+ + E D +F K MN + +I N IP D Sbjct: 329 LKEGLMKGLLSE-RDKKLLMGKLADFQVKNMNCWLLADSNSFLDLTDI--ENAVIPEFDI 385 Query: 348 -NQMCIGGLDFANIRDFASVGLLFRKNDDYIWLG-----------HSFV--RQGFLDDVK 393 + GLD + D ++G + Y +LG HSF+ +Q + K Sbjct: 386 RGKRVYVGLDASMFSDNTAIGFV------YPYLGEDGSQKWHVEQHSFIPWQQAGSLEAK 439 Query: 394 LEPP---IKEWEKMGLLTIVD--DDVIEIEYIVDWFLKAKEKYGLEKVV--ADNYRTDIV 446 +E ++ E+ G TI +I E + WF E L+ V D + Sbjct: 440 MEQDGVNYRDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDNALDVVFFGYDAMGVSKI 499 Query: 447 RRAFEA-AGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVK---- 501 +A E+ L IR + + T+F + N+ DD +MR N +K Sbjct: 500 IKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNI 559 Query: 502 -IKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADD 535 I+ D K K D V D AF A+Y +D Sbjct: 560 GIQVDKMKSTYKIDVVDALID---AFYDAMYAFED 591 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 45.8 bits (107), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 155/385 (40%), Gaps = 34/385 (8%) Query: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTP--LHGVKEYH 121 P+Q+FII N+ K T F E IF+ R GK LI+A++ L+ G K Y Sbjct: 84 PWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAALAWALALLERQSGSKIY- 142 Query: 122 ISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSN 181 I S + +Q+ SF+ I L + + + E S + + + IR +N Sbjct: 143 --ITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQENSISGEFSDGS-IYIRALAAN 199 Query: 182 TKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKH 241 +D I DE+H + P+ N+ + + N+ I+T G + Sbjct: 200 PDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITTAGDDMTSFCYQRLQ 259 Query: 242 KIASVLSGKVKNSRLFPFYCKLDDPK--EVDDRN--MWEKANPMLHKPLSEYARTLLSTI 297 +L V + F F CK D+ + EVD N EKANP + ++ +++ Sbjct: 260 YCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANP--NYGVTIRPDDIMNDA 317 Query: 298 EEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMC------ 351 + ND P R +F+ K +N+ + K E ++R+ Q+ Sbjct: 318 LQAQND-PQQRK---DFLAKSLNIYTSPM-KAYFNIDEFKKSDRKYDWTIEQLAKLGIDW 372 Query: 352 IGGLDFANIRDFASVGLLFRKNDDYIWLGHSF------VRQGFLDDVKLEPPIKEWEKMG 405 GG D + + D + L N I + H++ R+ D++ P+ W G Sbjct: 373 FGGADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAEEDNI----PLFGWRDDG 428 Query: 406 LLTIVDDDVIEIEYIVDWFLKAKEK 430 LT+ + + +V WF + K Sbjct: 429 WLTMTNTPTVNFSDVVKWFETMRAK 453 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 45.8 bits (107), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 155/385 (40%), Gaps = 34/385 (8%) Query: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTP--LHGVKEYH 121 P+Q+FII N+ K T F E IF+ R GK LI+A++ L+ G K Y Sbjct: 84 PWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAALAWALALLERQSGSKIY- 142 Query: 122 ISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTSN 181 I S + +Q+ SF+ I L + + + E S + + + IR +N Sbjct: 143 --ITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQENSISGEFSDGS-IYIRALAAN 199 Query: 182 TKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMKH 241 +D I DE+H + P+ N+ + + N+ I+T G + Sbjct: 200 PDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITTAGDDMTSFCYQRLQ 259 Query: 242 KIASVLSGKVKNSRLFPFYCKLDDPK--EVDDRN--MWEKANPMLHKPLSEYARTLLSTI 297 +L V + F F CK D+ + EVD N EKANP + ++ +++ Sbjct: 260 YCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANP--NYGVTIRPDDIMNDA 317 Query: 298 EEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMC------ 351 + ND P R +F+ K +N+ + K E ++R+ Q+ Sbjct: 318 LQAQND-PQQRK---DFLAKSLNIYTSPM-KAYFNIDEFKKSDRKYDWTIEQLAKLGIDW 372 Query: 352 IGGLDFANIRDFASVGLLFRKNDDYIWLGHSF------VRQGFLDDVKLEPPIKEWEKMG 405 GG D + + D + L N I + H++ R+ D++ P+ W G Sbjct: 373 FGGADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAEEDNI----PLFGWRDDG 428 Query: 406 LLTIVDDDVIEIEYIVDWFLKAKEK 430 LT+ + + +V WF + K Sbjct: 429 WLTMTNTPTVNFSDVVKWFETMRAK 453 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 27/232 (11%) Query: 61 FPTLPFQRFIIANIFLIDKNTDEAF---FTEFAIFMGRGGGKNGLISAISDFLSTPLHGV 117 F LP+QR ++ + +++ ++T + + + R GK+ + +AI + G Sbjct: 47 FRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGD 106 Query: 118 KEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRY 177 + I +N QA+ FD + ++ +PK + + VIRY Sbjct: 107 AQRQIIAAANDRNQARMVFDSAKQMV--------NASPK-------LAAVCDVQRDVIRY 151 Query: 178 --NTSNTKTKDGGRE-----GCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGF 230 NT + D GR+ V DE + ++ + G + IST G Sbjct: 152 KDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAGP 211 Query: 231 VRDGYIDSMKHKIASVLSGKVKNSRLF--PFYCKLDDPKEVDDRNMWEKANP 280 DG ++ + V SG+ + LF + KL + + D ++W NP Sbjct: 212 DPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACNP 263 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 27/232 (11%) Query: 61 FPTLPFQRFIIANIFLIDKNTDEAF---FTEFAIFMGRGGGKNGLISAISDFLSTPLHGV 117 F LP+QR ++ + + + ++T + + + R GK+ + +AI + G Sbjct: 50 FRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGD 109 Query: 118 KEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRY 177 + + +N QA+ FD + ++ +PK + + VIRY Sbjct: 110 AQRQVIAAANDRNQARMVFDSAKQMV--------NASPK-------LAAVCNVQRDVIRY 154 Query: 178 --NTSNTKTKDGGRE-----GCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGF 230 NT + D GR+ V DE + ++ + G + IST G Sbjct: 155 KDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLIISTAGP 214 Query: 231 VRDGYIDSMKHKIASVLSGKVKNSRLF--PFYCKLDDPKEVDDRNMWEKANP 280 DG ++ + V SG+ + LF + KL + + D +W + NP Sbjct: 215 DPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNP 266 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 106/501 (21%), Positives = 191/501 (38%), Gaps = 46/501 (9%) Query: 64 LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKN---GLISAISDFLSTPLHGVKEY 120 +P+Q+FI+ +F F+ + +GRG GK +++A S F+ + G+ Sbjct: 99 MPWQKFILCMLFGWRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIES--FGLSNQ 156 Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVS--QTKIINRATKSVIRYN 178 + S +Q I++++ + + + K+ E+ ++I +A +++R Sbjct: 157 DYLVTSIKFKQTNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSDQVIMKANNNILRAI 216 Query: 179 TSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDS 238 ++ + D IFDE+ V+ G K NR+ IST + Sbjct: 217 SAESGQYDSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQIST-AYPNPSVPFR 275 Query: 239 MKHKIASVLSGKVKNSRLFPFYCKL---DDPKEVDDRNMWEKANPMLHKPLSEYARTLLS 295 I N + C + D+ +EV W K+NP+L L + L+ Sbjct: 276 EDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLD--LEQERDNLMK 333 Query: 296 TIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGL 355 + ++ D N +F K MN + K+I + ++ + GL Sbjct: 334 GLLDK-RDSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKDIENAVIDDFDIKGKRVYVGL 392 Query: 356 DFANIRDFASVGLLFRKNDDYIWLG-----------HSFV--RQGFLDDVKLEPP---IK 399 D + D ++G + Y +LG HSF+ +Q + K+E + Sbjct: 393 DASMFSDNTALGFV------YPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGINYR 446 Query: 400 EWEKMGLLTIVD--DDVIEIEYIVDWFLKAKEKYGLEKVV--ADNYRTDIVRRAFEA-AG 454 + E G TI +I E + WF+ E L+ V D + + +A E+ Sbjct: 447 DLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMVNKIIKALESNTS 506 Query: 455 IELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVK-----IKPDGNKE 509 L IR + + T+F + N+ DD +MR N +K I+ D K Sbjct: 507 FPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKALINAVIKEDNIGIQVDKMKS 566 Query: 510 YIKKDEVRRKTDGFMAFVHAL 530 K D V D F ++A Sbjct: 567 TYKIDVVDALIDAFYDGMYAF 587 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 109/502 (21%), Positives = 187/502 (37%), Gaps = 59/502 (11%) Query: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHIS 123 P+Q FI ++IF + K + F E I +GR GK+ + I ++ G + Sbjct: 83 PWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYMFCA-DGENAAEVY 141 Query: 124 IVSNSEEQAKTSFDEIRNV--LMENKRNKTGKTPKAPYEVS-QTKIINRATKSVIRYNTS 180 + QAK F + L+ + R++ + VS + + R SV Sbjct: 142 CGATKMAQAKKVFTPASQMAKLLPDLRSR--------FNVSVWAEKLTREDGSVFAPVVG 193 Query: 181 NTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSMK 240 N DG C I DE H + + G+G + T I+T G + Sbjct: 194 NPG--DGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCYDKD 251 Query: 241 HKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPML-----HKPLSEYARTLLS 295 +++ L + N RLF +LD D KANP L ++ L E L Sbjct: 252 NEVKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFYEDLVEKLH-LAK 310 Query: 296 TIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGL 355 T+ ND+ N +++ + +D W + N ++ N + GL Sbjct: 311 TVPRMTNDIKTKHLNM--WVSGKTAFFNMDH------WAKAEDKNLKLSNFKGEESHLGL 362 Query: 356 DFANIRDF-ASVGLLFRKNDD---YIWLGHSF-VRQGFLD--DVKLEPPIKEWEK----- 403 D A D A V + R+ + Y +G F V + + D K+ K ++K Sbjct: 363 DLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQKWVNMQ 422 Query: 404 -MGLLTIVDDDVIEIEY--IVDWFLKAKEKYG-------LEKVVADNYRTDIVRRAFEAA 453 G + D D E +Y I+ + E+ G ++ A ++ FE Sbjct: 423 WAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSHELADNGFEPI 482 Query: 454 GIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYIK- 512 I D + ++ A + +P++ W +NV P G+ + ++ Sbjct: 483 NIRQDFTNMSPPMK-----ELEAALAGGRFHHDGNPILAWCISNVLGTFVP-GSDDRVRP 536 Query: 513 -KDEVRRKTDGFMAFVHALYRA 533 K + + K DG A + A+ RA Sbjct: 537 TKGDKQSKIDGATALLMAIGRA 558 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 85/383 (22%), Positives = 149/383 (38%), Gaps = 40/383 (10%) Query: 91 IFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVL----MEN 146 I + R GK L++ I +L G + I V+ ++QA +FD ++ + + Sbjct: 84 IELARKNGKTELLAGIMLYLLVA-DGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILS 142 Query: 147 KRNKTGKTPKAPYEVSQTK---IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFG 203 KR K K Y+ +I KS + N S GC DEI + Sbjct: 143 KRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPS----------GCGA-DEILAWQD 191 Query: 204 PEMVNVKRGGLGKKKNRRTFYIS--TDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYC 261 M + R G+G + ++ T G +G+ ++ V+ F Sbjct: 192 GGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVY 251 Query: 262 KLDDPKEVDDRN--MWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRM 319 + P E D N W ANP L + LS A + E + P +F + Sbjct: 252 MRNTPMEEDPWNEECWPHANPALGRFLSWEA---MRKQAAEARNNPIAEMAFRQFKLNQW 308 Query: 320 NLPEVDLEKVIAPWKE----ILATNREIPN-LDNQMCIGGLDFANIRDFASVGLLFRKND 374 + ++ A W E + +N+++ + Q C GLD A RD S+ LF ++D Sbjct: 309 QNSTIRWMRMPA-WDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSD 367 Query: 375 DYI------WLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAK 428 + W+ S + + LD + KE+ G L + + DV++ + + D Sbjct: 368 GSVDLLWRHWIPESALAK--LDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADS 425 Query: 429 EKYGLEKVVADNYRTDIVRRAFE 451 +++ + AD + +D V + E Sbjct: 426 KRFTILGGDADQWSSDPVIQEIE 448 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 115/520 (22%), Positives = 199/520 (38%), Gaps = 68/520 (13%) Query: 62 PT--LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLIS--AISDFLSTPLHGV 117 PT +P+Q+FI+ + + FT I + RG GK +++ + FL L G+ Sbjct: 113 PTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESL-GL 171 Query: 118 KEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIIN-----RATK 172 + S + +Q F ++ +L + + KT A ++ I+N + Sbjct: 172 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMN 231 Query: 173 SVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTD---- 228 + IR + D IFDEI E ++ G KN + IST Sbjct: 232 NKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDP 291 Query: 229 --GFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPL 286 F +D +++ + + S + DD E + W K+NP+L L Sbjct: 292 SVPFRKDQ--KTLQEAMEKDWDREADTSLCLVW--AQDDLSETFEPETWVKSNPLLE--L 345 Query: 287 SEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMN----------LPEVDLEKVIAPWKEI 336 + LL + ++ N + +F TK +N L D+EK I P I Sbjct: 346 EDKKDILLKGLIDKRNS-DLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSI 404 Query: 337 LATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD-----YIWLGHSFV---RQGF 388 Q C G+D++ + D ++ +F DD + HSFV R G Sbjct: 405 ----------HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 454 Query: 389 LDDVKLEPPI--KEWEKMGLLTIVDDD--VIEIEYIVDWFLKAKEKYGLEKVVADNYR-- 442 +D + + I +E EK G T+ +I + + +W + E L+ V+ Y Sbjct: 455 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALD-VIFFGYDAM 513 Query: 443 --TDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLM-RWFTNNV- 498 T +++ G L IR + + +F + ++ DD +M + N V Sbjct: 514 GITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVL 573 Query: 499 ---AVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADD 535 ++ I+ D K +K D V D A +Y +D Sbjct: 574 REDSIGIQVDKRKATLKIDVVDAIID---ALFQGMYHFED 610 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 114/520 (21%), Positives = 199/520 (38%), Gaps = 68/520 (13%) Query: 62 PT--LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLIS--AISDFLSTPLHGV 117 PT +P+Q+FI+ + + FT I + RG GK +++ + FL L G+ Sbjct: 116 PTELMPWQKFIMCMLIGWRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESL-GL 174 Query: 118 KEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIIN-----RATK 172 + S + +Q F ++ +L + + KT A ++ I+N + Sbjct: 175 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMN 234 Query: 173 SVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTD---- 228 + IR + D IFDEI E ++ G +N + IST Sbjct: 235 NKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVMVENHQFVQISTSYPDP 294 Query: 229 --GFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPL 286 F +D +++ + + S + DD E + W K+NP+L L Sbjct: 295 SVPFRKDQ--KTLQEAMEKDWDREADTSLCLVW--AQDDLSETFEPETWVKSNPLLE--L 348 Query: 287 SEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMN----------LPEVDLEKVIAPWKEI 336 + LL + ++ N + +F TK +N L D+EK I P I Sbjct: 349 EDKKDILLKGLIDKRNS-DLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSI 407 Query: 337 LATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD-----YIWLGHSFV---RQGF 388 Q C G+D++ + D ++ +F DD + HSFV R G Sbjct: 408 ----------HGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGS 457 Query: 389 LDDVKLEPPI--KEWEKMGLLTIVDDD--VIEIEYIVDWFLKAKEKYGLEKVVADNYR-- 442 +D + + I +E EK G T+ +I + + +W + E L+ V+ Y Sbjct: 458 IDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALD-VIFFGYDAM 516 Query: 443 --TDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLM-RWFTNNV- 498 T +++ G L IR + + +F + ++ DD +M + N V Sbjct: 517 GITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVL 576 Query: 499 ---AVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRADD 535 ++ I+ D K +K D V D A +Y +D Sbjct: 577 REDSIGIQVDKRKATLKIDVVDAIID---ALFQGMYHFED 613 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 38.9 bits (89), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 17/271 (6%) Query: 275 WEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWK 334 W K+NP+L P + LL + ++ D N +F TK +NL K Sbjct: 315 WVKSNPLLDLP--DQRDNLLKGLTDK-RDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLK 371 Query: 335 EILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV---RQGFLD 390 ++ N+D G D++ D ++ ++ +D + HSF+ + G ++ Sbjct: 372 DVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIE 431 Query: 391 DVKLEPPI--KEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVV--ADNYRTDIV 446 + + I + + + +T +I E I W L E++ L+ D + + V Sbjct: 432 AKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQV 491 Query: 447 RRAFEAAGIELD--VIRNPKAIHGLLAPR--IDTIFAKHNVIYGDDPLMRWFTNNVAVKI 502 + E+ + D ++ + L P + +F H V +DP+M+ N I Sbjct: 492 KNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV--I 549 Query: 503 KPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 K D ++ KD+ + D A + ALY+A Sbjct: 550 KADKIGIHVDKDKATLQIDVVDAIIDALYQA 580 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/302 (21%), Positives = 116/302 (38%), Gaps = 21/302 (6%) Query: 165 KIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFY 224 +I + T S ++ K+ G DEI + M + R G+G + Sbjct: 484 RIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPLM 543 Query: 225 IS--TDGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRN--MWEKANP 280 ++ T G +G+ ++ V+ F + P E D N W ANP Sbjct: 544 VASTTAGNDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANP 603 Query: 281 MLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKE----I 336 L + LS A + E + P +F + + ++ A W E + Sbjct: 604 ALGRFLSWEA---MRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPA-WDECKGTV 659 Query: 337 LATNREI-PNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYI------WLGHSFVRQGFL 389 +N+++ Q C GLD A RD S+ LF ++D + W+ S + + L Sbjct: 660 FKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAK--L 717 Query: 390 DDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEKVVADNYRTDIVRRA 449 D + KE+ G L + + DV++ + + D +++ + AD + +D V + Sbjct: 718 DRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADAKRFTILGGDADQWSSDPVIQE 777 Query: 450 FE 451 E Sbjct: 778 IE 779 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 112/528 (21%), Positives = 198/528 (37%), Gaps = 90/528 (17%) Query: 64 LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHG-VKEYHI 122 L F R++ D +T E + + + K+ L S I L+ + G K Sbjct: 63 LDFVRYVFGAY---DADTGNNLLKELFLLVPKKSAKSSLASGI--MLTALIIGWRKSASY 117 Query: 123 SIVSNSEEQAKTSFD----------EIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATK 172 I+S + E A SF E+ +L + +T I NR T Sbjct: 118 IIISPTIEIAGNSFKPAADSVRADPELSKLLQVSAHTRT--------------ITNRVTG 163 Query: 173 SVIRYNTSNTKTKDGGREGCVIFDEIHYFF----GPEMVNVKRGGLGKKKNRRTFYISTD 228 +V++ + T G + ++ DE+H G M+ GGL + ++T Sbjct: 164 AVLKVLAAAEDTVTGSKASVLLIDELHLMGLKENGSSMLREAAGGLAARPEGFVLKLTTQ 223 Query: 229 GF-VRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKE-VDDRNMWEKANPMLHKPL 286 G S +V G V + R F + PK +DD L P Sbjct: 224 SSQAPAGVFKSDLDLFRNVRDGIVVDKRRFGLL--YEHPKSWIDDGRAQTLEGIELVNPS 281 Query: 287 SEYARTLLSTIEEEYNDLPFNRSNKP------EFITKRMNLPEVDL----EKVIAP--WK 334 Y +++ Y + +N++ +F+ K N+ E+ + ++ W+ Sbjct: 282 LGY------SVDRNYLEDSYNKAKAVGGGELLDFLAKHANI-EIGMNLRNDRFAGSDFWQ 334 Query: 335 EILATNREIPNLDN-----QMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFL 389 + + NLD+ ++ + G+D + D + ++ R WL S+ G+ Sbjct: 335 Q---NSDPTLNLDSLIERCEVAVVGIDGGGLDDLLGLSVVGRCKKTRKWLSWSY---GWC 388 Query: 390 DDVKLE------PPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGL----EKVVAD 439 + LE ++++EK G LTIVD +++ + D LK EK GL + D Sbjct: 389 HSIALERVKQNASRLRDFEKAGELTIVDLPGQDVQELCDIVLKL-EKSGLLPEKNAIGVD 447 Query: 440 NYRTDIVRRAFEAAGIELDVIRNPKAIHGL-LAPRIDTI---FAKHNVIYGDDPLMRWFT 495 + +D+ R G L+ I T A + +I+ D +M W Sbjct: 448 QAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTCERALAGNTLIHADQDIMTWNI 507 Query: 496 NNVAVKIKPDGNKEYIKKDEV-RRKTDGFMAFVHALYRADDIVDKDMS 542 N+ V++K G+ Y K + K D HAL+ A ++ + S Sbjct: 508 GNLKVELK--GSALYSTKAAAGKAKVD----LAHALFNAISLISLNPS 549 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 37.4 bits (85), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 6/153 (3%) Query: 169 RATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTD 228 R+ + R ++ +GGRE + DE F + ++ G +K I+++ Sbjct: 143 RSKGATFRIVSAADSALNGGREKLAVVDEFGTFPNNPLPTIREGL--EKNEGLLLTITSN 200 Query: 229 GFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSE 288 VR G D + ++ N + + +LDD +++D N W KANP L + Sbjct: 201 NKVRGGAYDEELDTFRGY-NDEMDNFKQWGLIFELDDYSQIEDPNEWYKANPALDEAKGT 259 Query: 289 YARTLLSTIEEEYNDLPFNRSNKPEFITKRMNL 321 + TI E N + +KR N Sbjct: 260 VST---ETITRELNAARHSTIKANNLFSKRFNF 289 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 37.0 bits (84), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 33/386 (8%) Query: 160 EVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKK-- 217 E T++I + TK+ IR TS D ++DEI +K+ G+ Sbjct: 203 EAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGI 262 Query: 218 KNRRTFYISTD-GFVRDGYIDSMKHKIASVLSGKVKNS-RLFPFYCKLDDPKEVDDRNMW 275 KNR IST ++ + + A++ V+++ +F D EV + W Sbjct: 263 KNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYAQDSEDEVFEPETW 322 Query: 276 EKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKE 335 K+NP L + L + ++ ND F+ K +NL + Sbjct: 323 AKSNPNLLELQKSKRDNLQKALNQDRNDNE-REGTLETFVNKSLNLWSRRFQNSYLSLDN 381 Query: 336 ILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----YIWLGHSFV------- 384 I + + +++ + G D + D S G ++ D + HSF+ Sbjct: 382 IQRSIIDHFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKT 441 Query: 385 -----RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEK--VV 437 +Q LD +KL+ E +T + VI E + W + ++ L+ ++ Sbjct: 442 IEAKSKQDGLDYLKLQD-----EGFVDITNLASGVINTEQVYQWLVDYVNQHRLKVKFII 496 Query: 438 ADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRID--TIFAKHNVIYGDDPLMRWFT 495 AD + + + E + P L P D +F N+ +DPL+ Sbjct: 497 ADPNHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNITMLNDPLLIDGL 556 Query: 496 NNVAVKIKPDGNKEYIKKDEVRRKTD 521 NN AV ++ G +K D R +D Sbjct: 557 NN-AVLVEDRGGS--VKIDRQNRTSD 579 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 115/518 (22%), Positives = 199/518 (38%), Gaps = 75/518 (14%) Query: 62 PT--LPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKN---GLISAISDFLSTPLHG 116 PT + +Q+F+++ + F+ I +GRG GK ++ A S F+ + Sbjct: 105 PTKLMEWQKFMLSLLIGWRNKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFFVESRGLS 164 Query: 117 VKEYHISIVSNSEEQAKTS--FDEIRNVL-----MENKRNKTGKTPKAPYEVSQTKIINR 169 +++ +S + N+++ K + NVL +N +KT + +A KII R Sbjct: 165 NQDFLVSSI-NAKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQAD------KIIMR 217 Query: 170 ATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDG 229 +VIR + D IFDEI E ++ G K NR+ IST Sbjct: 218 NHNNVIRPISHEAGQYDSYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQIST-- 275 Query: 230 FVRDGYIDSMK--HKIASVLSGKVKNSRLF---PFYCKL---DDPKEVDDRNMWEKANPM 281 Y D H+ +L ++ L + C + D E W K+NP+ Sbjct: 276 ----AYPDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPL 331 Query: 282 LHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMN----------LPEVDLEKVIA 331 L SE+ + +++ ND+ + +F K +N L D+EK I Sbjct: 332 LDLA-SEHDNLMQGLLDKRDNDVLTGAVH--DFQCKNLNMWLSSDIDSYLNLADVEKAIV 388 Query: 332 PWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLF---RKNDDYIWL--GHSFV-- 384 P E N+ Q C G+D++ D +V ++ + W HSF+ Sbjct: 389 P--EF--------NIYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPF 438 Query: 385 -RQGFLDDVKLEPPI--KEWEKMGLLTIVDDD--VIEIEYIVDWFLKAKEKYGLEKVVAD 439 G ++ + + I +E E G TI +I + +W + E+ L+ V+ Sbjct: 439 QAAGSIEAKEKQDGINYRELETKGFCTITSHQQGLINDDEFYEWIVNYIEENSLD-VLFF 497 Query: 440 NYR----TDIVRRAFEAAGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYGDDPLMRWFT 495 Y T +++ G L IR + IF + + DD +M Sbjct: 498 GYDAMGVTKVIQMLLNNTGFNLQPIRQRTGELAKPTKFLQKIFVEGTISRLDDKIMEKAL 557 Query: 496 NNVAVKIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 N ++ G + + K + K D A + ALY+ Sbjct: 558 LNAVLREDSVGIQ--VDKRKATLKIDVVDAIIDALYQG 593 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 81/386 (20%), Positives = 146/386 (37%), Gaps = 33/386 (8%) Query: 160 EVSQTKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKK-- 217 E T++I + TK+ IR TS D ++DEI +K+ G+ Sbjct: 204 EAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGI 263 Query: 218 KNRRTFYISTD-GFVRDGYIDSMKHKIASVLSGKVKNS-RLFPFYCKLDDPKEVDDRNMW 275 KNR IST ++ + + A++ V+++ +F D EV + W Sbjct: 264 KNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETW 323 Query: 276 EKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPEVDLEKVIAPWKE 335 K+NP L + L + + ++ ND F+ K +NL + Sbjct: 324 AKSNPNLLELPKSKRDNLQNALNQDRNDNE-REGTLETFVNKSLNLWSRRFQNSYLSLDN 382 Query: 336 ILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----YIWLGHSFV------- 384 I + + +++ + G D + D S G ++ D + HSF+ Sbjct: 383 IQRSIIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKT 442 Query: 385 -----RQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKYGLEK--VV 437 +Q LD +KL+ E +T + VI + + W + ++ L+ ++ Sbjct: 443 IEAKSKQDGLDYLKLQD-----EGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFII 497 Query: 438 ADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPRID--TIFAKHNVIYGDDPLMRWFT 495 AD + + + E + P L P D +F N+ +DPL+ Sbjct: 498 ADPNHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNISMLNDPLLIDGL 557 Query: 496 NNVAVKIKPDGNKEYIKKDEVRRKTD 521 NN AV ++ G +K D R +D Sbjct: 558 NN-AVLVEDRGGS--VKIDRQNRTSD 580 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 33.9 bits (76), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 478 FAKHNVIYGDDPLMRWFTNNVAVKIKPDGNKEYI-KKDEVRRKTDGFMAFVHAL 530 A+ +++G PLM W N +++P GN I K+ R K D MA +A+ Sbjct: 483 LAEGVLVHGGQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 32.3 bits (72), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 25/176 (14%) Query: 378 WLGHSFVRQGFLDDVKLE------PPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKY 431 WL S+ G+ + LE ++++EK G LTIVD +++ + D LK EK Sbjct: 388 WLSWSY---GWCHSIALERVKQNASRLRDFEKAGELTIVDLPGQDVQELCDIVLKL-EKS 443 Query: 432 GL----EKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGL-LAPRIDTI---FAKHNV 483 GL + D + +D+ R G L+ I T A + + Sbjct: 444 GLLPEKNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTCERALAGNTL 503 Query: 484 IYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEV-RRKTDGFMAFVHALYRADDIVD 538 + D +M W +N+ V++K G+ Y K + K D HAL+ A ++ Sbjct: 504 THADQDIMDWNISNLKVELK--GSALYSTKAAAGKAKVD----LAHALFNAISLIS 553 Score = 27.3 bits (59), Expect = 0.54, Method: Compositional matrix adjust. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFF----GPEMVNVKRGGLGKKKNRR 221 + NR + +V++ ++ T G + ++ DE H G M+ GGL + Sbjct: 165 LTNRVSGAVLKIVAADENTVTGSKASVLLVDECHRLGTKENGGSMLREAAGGLAARPEGF 224 Query: 222 TFYIST 227 +ST Sbjct: 225 IIKLST 230 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 32.0 bits (71), Expect = 0.018, Method: Compositional matrix adjust. Identities = 110/532 (20%), Positives = 198/532 (37%), Gaps = 98/532 (18%) Query: 57 EKWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHG 116 E+W F F+ A D T + EF + + + K+ + + I Sbjct: 56 EQWVF------DFVAAIFGAYDAETGKQLIREFFLLISKKNTKSTIAAGIMLTAVILCWR 109 Query: 117 VKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQT--------KIIN 168 +E H+ I++ ++E A SF ++ +A E+S+ I + Sbjct: 110 EEEEHL-ILAPTKEVADNSFKPAAGMI------------RADAELSELFHVQDHIRTITH 156 Query: 169 RATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTD 228 R +++ ++ ++T T G + G ++ DE H+ FG K+ N ++ Sbjct: 157 RVSRASLKVVAADTDTVSGKKSGKILIDE-HWVFG------------KRANAEAMFMEAT 203 Query: 229 G--FVRD-GYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDRNM---WEKANPML 282 G RD G++ + + +G K +Y + D K VD +++ +E M+ Sbjct: 204 GGQVSRDEGWVIILTTQSDEPPAGVFKEK--LQYYRDVRDGKIVDRKSLGVLYEFPEEMV 261 Query: 283 HK-----PLSEYART--LLSTIEEEYNDLPFNR------SNKPEFITKRMNLPEVDLEKV 329 P + Y L ++ E+ + N+ + +FI K +N+ E+ + Sbjct: 262 KSKAYLDPANYYITNPNLGRSVSAEWLEDQLNKIRTKTDGSFQQFIAKHLNV-EIGMNLR 320 Query: 330 IAPWKEI-LATNREIPN----LD----NQMCIGGLDFANIRDFASVGLLFRKNDDYIWLG 380 W N +P LD ++ G+D + D + + R WL Sbjct: 321 SDRWAGADFWINAGLPERVTLLDLIEQCEVIAAGIDGGGLDDLLGLSAVGRVRGGRNWLA 380 Query: 381 --HSFVRQGFLDDVK-LEPPIKEWEKMGLLTIVD---DDVIEIEYIVDWFLKAKEKYGLE 434 H++ L+ K + P + ++EK G LTIV +DV++ V +A Y Sbjct: 381 WAHAWAHPSVLERRKEIAPALHDFEKAGDLTIVSRIGEDVVQAAEYVARIERAGLLY--- 437 Query: 435 KVVADNYRTDIVRRAFEAAGIELDVI--------------RNPKAIHGLLAPRIDTIFAK 480 K D + A AA + D + + I RI+ A Sbjct: 438 KAGVDPAGIGAILDALAAARVPEDKVIGISQGWKLSGAIKTTERRIAAASGQRIEGDEAP 497 Query: 481 HNVIY-GDDPLMRWFTNNVAVKIKPDGNKEYIKKD-EVRRKTDGFMAFVHAL 530 +Y G PL+ W N ++ P GN I K K D MA +A+ Sbjct: 498 DGALYHGGQPLLTWAVGN--ARVVPVGNAVNITKQVSGTAKIDPLMALFNAV 547 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 31.6 bits (70), Expect = 0.026, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 115/289 (39%), Gaps = 27/289 (9%) Query: 264 DDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNRSNKPEFITKRMNLPE 323 D+ EV W K+NP+L SE + +++ +DL N +F K MN Sbjct: 50 DNLDEVFQPETWAKSNPLLDLE-SERENLMKGLMDKRDSDLL--SGNLADFQVKNMNCWL 106 Query: 324 VDLEKVIAPWKEILATNREIPNLD--NQMCIGGLDFANIRDFASVGLLFR---KNDDYIW 378 + K+I N IP D + GLD + D ++G ++ ++ W Sbjct: 107 LADSNSFLDLKDI--ENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKW 164 Query: 379 L--GHSFV--RQGFLDDVKLEPP---IKEWEKMGLLTIVD--DDVIEIEYIVDWFLKAKE 429 HSF+ +Q + K+E ++ E+ G TI +I E + WF+ E Sbjct: 165 HIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVE 224 Query: 430 KYGLEKVV--ADNYRTDIVRRAFEA-AGIELDVIRNPKAIHGLLAPRIDTIFAKHNVIYG 486 L+ V D TD + ++ E+ L IR + + T+F + N+ Sbjct: 225 DNQLDVVFFGYDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRL 284 Query: 487 DDPLMRWFTNNVAVK-----IKPDGNKEYIKKDEVRRKTDGFMAFVHAL 530 DD +MR N +K I+ D K K D V D F ++A Sbjct: 285 DDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAF 333 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 30.0 bits (66), Expect = 0.066, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 25/176 (14%) Query: 378 WLGHSFVRQGFLDDVKLE------PPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAKEKY 431 WL S+ G+ + LE ++++EK G LTIVD +++ + + LK EK Sbjct: 380 WLSWSY---GWCHTIALERVKQNASRLRDFEKAGELTIVDLPGQDVQELCEIVLKL-EKS 435 Query: 432 GL----EKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGL-LAPRIDTI---FAKHNV 483 GL + D + +D+ R G L+ I T A + + Sbjct: 436 GLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTCERALAGNTL 495 Query: 484 IYGDDPLMRWFTNNVAVKIKPDGNKEYIKKDEV-RRKTDGFMAFVHALYRADDIVD 538 + D +M W +N+ V++K G+ Y K + K D HAL+ A ++ Sbjct: 496 THADQDIMDWNISNLKVELK--GSALYSTKAAAGKAKVD----LAHALFNAISLIS 545 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 27.7 bits (60), Expect = 0.33, Method: Compositional matrix adjust. Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 33/256 (12%) Query: 44 FDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKNTDEAFFT--EFAIFMGRGGGKNG 101 F E K ++ I+ EK P+Q+ ++ + ID ++ +T +F + R GK Sbjct: 20 FTETKYQEAIEIYEKSKHECYPWQKNLLKEVMAID---EDGLWTHQKFGYSIPRRNGKTE 76 Query: 102 LISAISDFLSTPLHGVKEYHISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEV 161 ++ + L + + G+ H ++ + +S+++++ L E+ G+ K+ Sbjct: 77 IVYILE--LWSLVQGLSILH---TAHRISTSHSSYEKLKKYL-EDSGYVEGEDFKSIKAK 130 Query: 162 SQTKIINRATKSVIRYNTSNTKTKDGG-REG--CVIFDEIHYFFGPEMVNVKRGGLGKKK 218 Q ++ + VI++ T+T GG EG ++ DE + E + + + Sbjct: 131 GQERLELIESGGVIQF---RTRTSSGGLGEGFDILVIDEAQEYT-TEQESALKYTVTDSD 186 Query: 219 NRRTFYIST------DGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDDR 272 N T T G V Y D + ++GK K S + ++D K++ D Sbjct: 187 NPMTIMCGTPPTPVSSGTVFTNYRD-------NTIAGKAKYSGWAEW--SVEDVKDIHDV 237 Query: 273 NMWEKANPMLHKPLSE 288 W +NP + L+E Sbjct: 238 EAWYNSNPSMGYHLNE 253 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 27.3 bits (59), Expect = 0.47, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 20/133 (15%) Query: 245 SVLSGKVKNSRLFPFYCKLDDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDL 304 + L GK K S + + D KE+DD W +NP + L+E R + + + E+ D Sbjct: 213 TCLFGKGKYSGWAEW--SVSDEKEIDDVEAWYNSNPSMGYHLNE--RKIEAELGEDKLDH 268 Query: 305 PFNRSNKPEFITKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIG---GLDFANIR 361 R ++ + E + W E+ +IP L ++ +G G D N+ Sbjct: 269 NIQRLGFWPTYNQKSAISETE-------WNELKMD--DIPELSGKLSVGIKYGQDGTNV- 318 Query: 362 DFASVGLLFRKND 374 ++ + R ND Sbjct: 319 ---AMSIAARTND 328 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 26.9 bits (58), Expect = 0.64, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 35/257 (13%) Query: 44 FDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKNTDEAFFT--EFAIFMGRGGGKNG 101 F E K ++ I+ EK P+Q+ ++ I ID ++ +T +F + R GK Sbjct: 20 FTETKYQEAIEIYEKSKHECYPWQKNLLKEIMAID---EDGLWTHQKFGYSIPRRNGKTE 76 Query: 102 LISAISDFLSTPLHGVKEYHISIVSNSE--EQAKTSFDEIRNVLMENKRNKTGKTPKAPY 159 ++ + + E +SI+ + + +S+++++ L E+ G+ K+ Sbjct: 77 IVYILELW-------ALEQGLSILHTAHRISTSHSSYEKLKKYL-EDSGYVEGEDFKSIK 128 Query: 160 EVSQTKIINRATKSVIRYNTSNTKTKDGG-REGC-VIFDEIHYFFGPEMVNVKRGGLGKK 217 Q ++ + VI++ T+T GG EG ++F + + E + + + Sbjct: 129 AKGQERLELIESGGVIQF---RTRTSSGGLGEGFDILFIDEAQEYTTEQESALKYTVTDS 185 Query: 218 KNRRTFYIST------DGFVRDGYIDSMKHKIASVLSGKVKNSRLFPFYCKLDDPKEVDD 271 N T T G V Y D + L+GK K S + ++D K++ D Sbjct: 186 DNPMTIMCGTPPTPVSSGTVFTNYRD-------NTLAGKAKYSGWAEW--SVEDVKDIHD 236 Query: 272 RNMWEKANPMLHKPLSE 288 W +NP + L+E Sbjct: 237 VEAWYNSNPSMGYHLNE 253 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Query: 423 WFLKAKEKYGLEKVVADNYRTDIVRRAFEAAGIELDVIRNPKAIHGLLAPR 473 W + EK G++ ADN D++ + A GIE+ + R + LL+ R Sbjct: 338 WLREELEKVGVDTAGADNNAHDVIGK---AQGIEVGIER----MQSLLSER 381 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%) Query: 180 SNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDGYIDSM 239 +N+KT G + FDEI + E + G+ +K R Y ST S+ Sbjct: 251 TNSKTAQS-YHGNLYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFSTP--------SSI 301 Query: 240 KHKIASVLSGKVKNSR 255 H + SGK+ N + Sbjct: 302 THSAYLLWSGKLFNRK 317 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 9/76 (11%) Query: 175 IRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVRDG 234 + + +N +T G G FDE + F + +N G+ +K R Y ST Sbjct: 238 LHFLGTNARTAQG-YHGNFYFDEFFWTFKFKELNKVASGMAMQKRYRRTYFSTP------ 290 Query: 235 YIDSMKHKIASVLSGK 250 SM H+ + +G+ Sbjct: 291 --SSMAHEAYTFWTGE 304 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 23.9 bits (50), Expect = 4.6, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 82 DEAFFTEFAIFMGRGGGKNGLISAISDFLST 112 +EA+F E F G G K+ + A SD ++ Sbjct: 474 NEAYFQELEGFCGDGKTKDDQVDATSDAFNS 504 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 264 DDPKEVDDRNMWEKANPMLHKPLSEYARTLLSTIEEEYNDLPFNR 308 D+ + DDR+ W K NP P AR +L + + D F R Sbjct: 231 DEDADPDDRSQWRKMNP--SYPHRTSARAILR-MRKALGDESFKR 272 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 23.5 bits (49), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 HI+I + +EE K + D M + R +T K +E ++ K+ +R ++ + + + Sbjct: 277 HINIPAIAEEGIKDALDRAPGEAMVSARGRT----KEQFEATKRKVGDRVWYAMYQGSPT 332 Query: 181 N 181 N Sbjct: 333 N 333 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 121 HISIVSNSEEQAKTSFDEIRNVLMENKRNKTGKTPKAPYEVSQTKIINRATKSVIRYNTS 180 HI+I + +EE K + D M + R +T K +E ++ K+ +R ++ + + + Sbjct: 275 HINIPAIAEEGIKDALDRAPGEAMVSARGRT----KEQFEATKRKVGDRVWYAMYQGSPT 330 Query: 181 N 181 N Sbjct: 331 N 331 >gi|14207|lcl|protein:vir:8315 Length: 503 # NCBI annotation: gp32 # Family: family:all:523 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817883;genbank:gi:29566316;genbank:GeneID :1259511 Length = 503 Score = 23.1 bits (48), Expect = 8.9, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 11/20 (55%) Query: 261 CKLDDPKEVDDRNMWEKANP 280 C +D ++DD W ANP Sbjct: 263 CGAEDTGDLDDIEQWMNANP 282 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.140 0.417 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,704 Number of Sequences: 514 Number of extensions: 14495 Number of successful extensions: 216 Number of sequences better than 100.0: 85 Number of HSP's better than 100.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 89 length of query: 553 length of database: 206,069 effective HSP length: 76 effective length of query: 477 effective length of database: 167,005 effective search space: 79661385 effective search space used: 79661385 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)