BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019911.1_cdsid_YP_007236353.1 [gene=g50] [protein=TerL large terminase subunit-like protein] [protein_id=YP_007236353.1] [location=37647..39551] (634 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 404 e-114 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 402 e-114 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 397 e-112 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 383 e-108 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 370 e-104 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 369 e-104 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 288 2e-79 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 276 7e-76 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 273 3e-75 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 273 6e-75 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 271 2e-74 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 271 2e-74 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 269 7e-74 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 267 2e-73 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 262 9e-72 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 235 2e-63 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 216 6e-58 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 75 2e-15 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 47 5e-07 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 33 0.008 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 33 0.009 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 33 0.015 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 26 1.1 gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: put... 26 1.7 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 25 1.9 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 25 2.0 gi|12972|lcl|protein:vir:80678 Length: 503 # NCBI annotation: gp... 24 4.3 gi|6106|lcl|protein:vir:95799 Length: 180 # NCBI annotation: maj... 24 6.2 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 24 6.5 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 23 7.4 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 23 7.5 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 404 bits (1038), Expect = e-114, Method: Compositional matrix adjust. Identities = 231/562 (41%), Positives = 327/562 (58%), Gaps = 22/562 (3%) Query: 77 VSKIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQAT 136 ++++QADI KF+ G K M++AQR QAKTTIAA++ V+++IH+P R++I+S +A Sbjct: 50 LNRVQADILKFLFGGNKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRAE 109 Query: 137 DISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG 196 +I+ VI+I +D LE + PD GD+ S++ F+IHY+LR DKS SV+C I A +QG Sbjct: 110 EIAGWVIKIFRGLDFLEFMLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAGMQG 169 Query: 197 RRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQSGRTIYLGTPQSSDSIYNSLPG 256 RAD +LADD+ES +NS TA R L TK+F SINQ G IYLGTPQS +SIYN+LP Sbjct: 170 ARADIILADDVESLQNSRTAAGRALLEDLTKEFESINQFGDIIYLGTPQSVNSIYNNLPA 229 Query: 257 RGYNVRIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEPSFIGE 316 RGY +RIWPGR+PT EQ YG++LAP++ + M P L SG G++ QG P P + Sbjct: 230 RGYQIRIWPGRYPTLEQEACYGDFLAPMIRQDMIDDPSLRSGYGIDGTQGAPTCPEMYDD 289 Query: 317 EILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIITMALRPGDDLPLEVKR-GYDF 375 E L +KE QG + FQLQ MLNTR+MDA+RYPL+ +I M+ G D+ E+ D Sbjct: 290 EKLIEKEISQGTAKFQLQFMLNTRLMDADRYPLRLNQLILMSF--GTDVVPEMPTWSNDS 347 Query: 376 QDYIVEGKSY------RFAKPHGISTELAPAHGICFYIDPAGGGKGKGTHGGDETGWACT 429 + I + + +P E P YIDPAGGGK GDETG A Sbjct: 348 VNLISDAPRFGNKPTDYLYRPVPRPYEWRPIQRRLMYIDPAGGGK-----NGDETGVAIV 402 Query: 430 AFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIEQNFGYGALRAVFLPIL-R 488 L IYV G+ GGY + ++ + + V IE+NFG+GA AV P R Sbjct: 403 FLLGTFIYVYKVFGVPGGYSESALSRIVREAKQAEVKEVFIEKNFGHGAFEAVIKPYFER 462 Query: 489 EYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNRITYC 548 E+ E +++D+ TGQKE RII+ LEP+++ +I + + + ++ +P R++Y Sbjct: 463 EWPAE--LKEDYATGQKEARIIETLEPLMSAHRIIFNAEMIKQDIDSVQHYPLEVRMSYS 520 Query: 549 FMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQ----KKVRVQAAEAALEAFWK 604 Q++ IT ++ L HDDRLDAL GA Q+ D+ ++R + LE Sbjct: 521 LFAQMSNITLEKGCLRHDDRLDALYGAIRQLTSQIDYDEANRINRLRAKEMREYLEMM-T 579 Query: 605 DPMNHNRIKTRQQMSFDHSRNM 626 DP+ T Q + S N+ Sbjct: 580 DPLRRREFFTGQDHGYRKSTNV 601 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 402 bits (1033), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/531 (41%), Positives = 316/531 (59%), Gaps = 19/531 (3%) Query: 77 VSKIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQAT 136 +++IQADI +FM G K M++AQR QAKTTIAA++ V+ +IH P R+LI S +A Sbjct: 50 LNRIQADILRFMFTGKKYRMVEAQRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSKRAE 109 Query: 137 DISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG 196 +I+ VI+I +D+LE + PD GD+ S+ F+IHY+LR S SV+C I ++QG Sbjct: 110 EIAGWVIKIFRGLDILEFMMPDIYSGDKASIRGFEIHYTLRGSGASPSVACYSIEGSMQG 169 Query: 197 RRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQSGRTIYLGTPQSSDSIYNSLPG 256 RAD ++ADD+ES +NS TA R +L TK+F SINQ+G +YLGTPQS +SIYN+LP Sbjct: 170 ARADLIIADDVESLQNSATAAGRVKLEEATKEFESINQTGDILYLGTPQSINSIYNNLPS 229 Query: 257 RGYNVRIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEPSFIGE 316 RGY +RIWPGR+PT EQ+ YG++LAPL+ E M+ P+L GGG+ QG P P + Sbjct: 230 RGYQLRIWPGRYPTVEQQVSYGDFLAPLIIEDMEANPELRRGGGITRLQGQPTCPEMYND 289 Query: 317 EILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENII--TMALRPGDDLPLEVKRGYD 374 E L +KE QG + FQLQ MLNTR+ D+ER+PLK +I+ + ++PL D Sbjct: 290 EALIEKEISQGTAKFQLQFMLNTRLSDSERFPLKLSSIMFGNFGVDKVPEMPLH---STD 346 Query: 375 FQDYIVEGK------SYRFAKPHGISTELAPAHGICFYIDPAGGGKGKGTHGGDETGWAC 428 + I E + + RF + E PA YIDPAGGG+ GDETG A Sbjct: 347 SINEIKEAQRPGNKSTDRFYRMAPRPYEWKPATRRIMYIDPAGGGQ-----NGDETGVAI 401 Query: 429 TAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIEQNFGYGALRAVFLPILR 488 L IYV G+KGGY+ + Q+ + V +E+NFG+GA +A+ P Sbjct: 402 VFLLGTYIYVYKCFGVKGGYEDADLEQIVMAAKEANCKEVFVEKNFGHGAFQAIIKPFF- 460 Query: 489 EYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNRITYC 548 E C +++D+ TGQKE RIID LEP+++ L+ + + + + + + +Y Sbjct: 461 ERLHPCELQEDYATGQKEERIIDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQASYS 520 Query: 549 FMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQ--KKVRVQAAEA 597 HQ+ ITRD+ +L HDDR+DAL GA + D+ K+ R Q +A Sbjct: 521 LFHQIANITRDKGSLRHDDRIDALYGAVRQLTTDIDYDEMAKQSREQMEQA 571 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 397 bits (1019), Expect = e-112, Method: Compositional matrix adjust. Identities = 226/562 (40%), Positives = 328/562 (58%), Gaps = 35/562 (6%) Query: 79 KIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDI 138 ++QADI KF+ G K +I+A R AKTT++A++ V+++IH+P R++++S +A +I Sbjct: 52 RMQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEI 111 Query: 139 STLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQGRR 198 + V++I +D LE + PD GDR SV+ F+IHY+LR DKS SVSC I A +QG R Sbjct: 112 AGWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGAR 171 Query: 199 ADTLLADDIESQKNSLTALMREQLLAKTKDFASINQSGRTIYLGTPQSSDSIYNSLPGRG 258 AD +LADD+ES +N+ TA R L TK+F SINQ G IYLGTPQ+ +SIYN+LP RG Sbjct: 172 ADIILADDVESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARG 231 Query: 259 YNVRIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEPSFIGEEI 318 Y+VRIW R+P+ EQ YG++LAP++ + M P L SG GL+ + G P P +E+ Sbjct: 232 YSVRIWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDEV 291 Query: 319 LRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIITMALRPGDDLPLEVKRGYDFQDY 378 L +KE QG + FQLQ MLNTRMMDA+RYPL+ N+I + +++P+ D + Sbjct: 292 LIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSF-GTEEVPVMPTWSNDSINI 350 Query: 379 IVEGKSY------RFAKPHGISTELAPAHGICFYIDPAGGGKGKGTHGGDETGWACTAFL 432 I + Y +P E YIDPAGGGK GDETG A FL Sbjct: 351 IGDAPKYGNKPTDFMYRPVARPYEWGAVSRKIMYIDPAGGGK-----NGDETGVAIV-FL 404 Query: 433 NGN-IYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIEQNFGYGALRAVFLPIL-REY 490 +G IYV G+ GGY + ++ + + V IE+NFG+GA AV P RE+ Sbjct: 405 HGTFIYVYQCFGVPGGYRESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYFEREW 464 Query: 491 YTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNRITYCFM 550 ++E+D+ TGQKELRII+ LEP++A LI + + + ++ +P R++Y Sbjct: 465 --PVTLEEDYATGQKELRIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSLF 522 Query: 551 HQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQKKVRVQAAEAALEAFWKDPMNHN 610 +Q++ IT ++++L HDDRLDAL GA Q+ D+ R+ N Sbjct: 523 NQMSNITIEKNSLRHDDRLDALYGAIRQLTSQIDYDE-VTRI-----------------N 564 Query: 611 RIKTRQQMSFDHSRNMLSYRRG 632 R++ ++ + H+ N RR Sbjct: 565 RLRAQEMRDYIHAMNTPHLRRA 586 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 383 bits (983), Expect = e-108, Method: Compositional matrix adjust. Identities = 221/579 (38%), Positives = 334/579 (57%), Gaps = 27/579 (4%) Query: 46 RIRKEELAAVQDHYRNFNTFLTDVMVELGFTVSKIQADIGKFMVNGGKRVMIQAQRSQAK 105 R R E V++ Y F F D M LG++++ +Q DI +FM G +R M+ AQR +AK Sbjct: 4 RERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRGEAK 63 Query: 106 TTIAAVFCVWQLIHDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRV 165 +TIA +F +W L+ DP HRV+++S +A + L+ +I N +L+ + PDK GDR Sbjct: 64 STIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRT 123 Query: 166 SVEKFDIHYSLRKLDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAK 225 SV +FD+H+SL+ +DKSASV+C GIT++LQG R D L+ DDIE+ KN LTA R +L+ Sbjct: 124 SVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITL 183 Query: 226 TKDFASI--NQSGRTIYLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQRPYYGEYLAP 283 +K+F SI +++GR +YLGTPQ+ +SIYN+LPGRG+ VR+WPGRFP A + P YG+ LAP Sbjct: 184 SKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDALAP 243 Query: 284 LLCELMDKY-PQLMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMM 342 + E M + +G GL+ +G +P EE L DKE DQGP F+LQ MLNT + Sbjct: 244 SILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNTSLS 303 Query: 343 DAERYPLKSENIITMALRPGDDLPLEVKRGYD-------FQDYIVEGKSYRFAKPHGIST 395 DA R LK ++I +A + +P V D Q++ V+ S +P + Sbjct: 304 DAARQQLKLRDLI-VADFSHEQVPESVFWAADPRFKIDLPQEFPVQ--SVEMFRPASVHE 360 Query: 396 ELAPAHGICFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQ 455 A + ++DPAG +GGDE +A + I+V+ +GG KGG + + Sbjct: 361 HFAQIKSMTLFLDPAG-------NGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDK 413 Query: 456 LAELVAKYKPNVVKIEQNFGYGA----LRAVFL---PILREYYTECSVEDDFVTGQKELR 508 L +L + VV +E+N G G +R FL P ++ V++ TGQKELR Sbjct: 414 LVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELR 473 Query: 509 IIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDR 568 II+ + P++ + L++ A+ + L +P +R ++Q++ IT DR +L DDR Sbjct: 474 IINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDR 533 Query: 569 LDALAGACNHWAEQLIVDQKKVRVQAAEAALEAFWKDPM 607 LDAL G L++D+ K + + A ++ F ++PM Sbjct: 534 LDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFLRNPM 572 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 370 bits (951), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/576 (36%), Positives = 323/576 (56%), Gaps = 28/576 (4%) Query: 55 VQDHYRNFNTFLTDVMVELGFTVSKIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCV 114 V+D Y F F D M+ LGF ++ +Q DI FM + + M+ AQR +AK+TIA ++ V Sbjct: 13 VRDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKSTIACIYVV 72 Query: 115 WQLIHDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHY 174 W + +P R +++S G +A + L+ ++IM+ D+L +RP+ GDR S FD+++ Sbjct: 73 WCITQNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNW 132 Query: 175 SLRKLDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ 234 +L+ ++KSAS++C GITA LQG RAD L+ DDIE+ KN LTA R +L ++++F SI Sbjct: 133 ALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192 Query: 235 SGRTIYLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQRPYYGEYLAP----LLCELMD 290 G+ +YLGTPQS +SIYN LP RG+ +RIWPGRFPT +++ YG++LAP + L + Sbjct: 193 HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQARYGDWLAPSILARIARLEE 252 Query: 291 KYPQLMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLK 350 K +G GL+ +G +P EE L DKE DQGP FQLQ+ML+T + D +R LK Sbjct: 253 KGHNPRTGKGLDGTRGWAADPQRYNEEDLLDKELDQGPEGFQLQYMLDTSLADEQRMQLK 312 Query: 351 SENIITMALRPGDDLPLEVKRGYDFQDYIVEGKSYRFAK-------PHGISTELAPAHGI 403 +++ + + +P +V D + + ++ ++RF P ++ AP + Sbjct: 313 LRDLLFIDA-THESVPEQVAWAAD-ERFKLKFDAHRFPVIKPELYLPALMAGGWAPLQQM 370 Query: 404 CFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKY 463 ++DPAG GGDE +A L I+V+ GG KGG+ + + + L A+Y Sbjct: 371 TMFVDPAG-------DGGDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARY 423 Query: 464 KPNVVKIEQNFGYGALRAVFLPILREY--------YTECSVEDDFVTGQKELRIIDVLEP 515 V+ +E+N G GA+ +F +R Y VED +GQKE RIID L P Sbjct: 424 GVKVIYVEKNLGAGAVGQLFRNHMRSIDPDTGKLRYEGIGVEDRQKSGQKERRIIDTLRP 483 Query: 516 IIARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGA 575 I+ R LI A+ + + +P R HQ++ IT DR +L DDR+DAL G Sbjct: 484 IMQRHRLIFHVSAMDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPKDDRIDALEGL 543 Query: 576 CNHWAEQLIVDQKKVRVQAAEAALEAFWKDPMNHNR 611 A L+ D + EAA + + +PM + + Sbjct: 544 VRELAPTLVKDDEAATRAREEAAKKEWLNNPMGYTK 579 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 369 bits (947), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/576 (36%), Positives = 321/576 (55%), Gaps = 28/576 (4%) Query: 55 VQDHYRNFNTFLTDVMVELGFTVSKIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCV 114 V D Y F F D M+ LGF ++ +Q DI FM + + M+ AQR +AK+TIA ++ V Sbjct: 13 VMDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKSTIACIYVV 72 Query: 115 WQLIHDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHY 174 W ++ DP R +++S G +A + L+ ++IM+ D+L +RP+ GDR S FD+++ Sbjct: 73 WCIVRDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNW 132 Query: 175 SLRKLDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ 234 +L+ ++KSAS++C GITA LQG RAD L+ DDIE+ KN LTA R +L ++++F SI Sbjct: 133 ALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192 Query: 235 SGRTIYLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQRPYYGEYLAPLLCE----LMD 290 G+ +YLGTPQS +SIYN LP RG+ +RIWPGRFPT +++ YG++LAP + E L + Sbjct: 193 HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQERYGDWLAPSILERIARLEE 252 Query: 291 KYPQLMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLK 350 + +G GL+ +G +P EE L DKE DQG FQLQ+ML+T + D +R LK Sbjct: 253 RGHNPRTGKGLDGTRGWAADPQRYNEEDLIDKELDQGAEGFQLQYMLDTSLADEQRMQLK 312 Query: 351 SENIITMALRPGDDLPLEVKRGYDFQDYIVEGKSYRFA-------KPHGISTELAPAHGI 403 +++ + + +P +V D + + ++ ++RF P ++ AP + Sbjct: 313 LRDLLFIDA-THESVPEQVAWAAD-ERFKLKFDAHRFPIIKPELYLPALMAGGWAPLQQM 370 Query: 404 CFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKY 463 ++DPAG GGDE +A L I+V+ GG KGG+ + + + L A+Y Sbjct: 371 TMFVDPAG-------DGGDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARY 423 Query: 464 KPNVVKIEQNFGYGALRAVFLPILREY--------YTECSVEDDFVTGQKELRIIDVLEP 515 V+ +E+N G GA+ +F +R Y +ED +GQKE RIID L P Sbjct: 424 GVKVIYVEKNLGAGAVGQLFRNYMRSINPDTGKPRYEGIGIEDRQKSGQKERRIIDTLRP 483 Query: 516 IIARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGA 575 I+ R LI A+ + +P R HQ++ IT DR +L DDR+DAL G Sbjct: 484 IMQRHRLIFHVSAMDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPKDDRIDALEGL 543 Query: 576 CNHWAEQLIVDQKKVRVQAAEAALEAFWKDPMNHNR 611 L+ D + EAA + + +PM + + Sbjct: 544 VRELTPSLVKDDEAATRAREEAAKKEWLNNPMGYTK 579 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 288 bits (736), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/339 (44%), Positives = 212/339 (62%), Gaps = 7/339 (2%) Query: 79 KIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDI 138 ++QADI KF+ G K +I+A R AKTT++A++ V+++IH+P R++++S +A +I Sbjct: 52 RMQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEI 111 Query: 139 STLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQGRR 198 + V++I +D LE + PD GDR SV+ F+IHY+LR DKS SVSC I A +QG R Sbjct: 112 AGWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGAR 171 Query: 199 ADTLLADDIESQKNSLTALMREQLLAKTKDFASINQSGRTIYLGTPQSSDSIYNSLPGRG 258 AD +LADD+ES +N+ TA R L TK+F SINQ G IYLGTPQ+ +SIYN+LP RG Sbjct: 172 ADIILADDVESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARG 231 Query: 259 YNVRIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEPSFIGEEI 318 Y+VRIW R+P+ EQ YG++LAP++ + M P L SG GL+ + G P P +++ Sbjct: 232 YSVRIWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDDV 291 Query: 319 LRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIITMALRPGDDLPLEVKRGYDFQDY 378 L +KE QG + FQLQ MLNTRMMDA+RYPL+ N+I + +++P+ D + Sbjct: 292 LIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFG-TEEVPVMPTWSNDSINI 350 Query: 379 IVEGKSY------RFAKPHGISTELAPAHGICFYIDPAG 411 I + Y +P E YIDPAG Sbjct: 351 IGDAPKYGNKPTDFMYRPVARPYEWGAVTRKIMYIDPAG 389 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 276 bits (705), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 192/571 (33%), Positives = 278/571 (48%), Gaps = 55/571 (9%) Query: 61 NFNTFLTDVMVELGFTV-SKIQADIGKFMVNG-GKRVMIQAQRSQAKTTIAAVFCVWQLI 118 +F FL + L V +K Q D+ K + NG K+ ++QA R K+ I F VW L Sbjct: 18 DFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWTLW 77 Query: 119 HDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRK 178 DP+ ++LI+SA +A S + II + L ++P G R SV FD+ + K Sbjct: 78 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPA--K 133 Query: 179 LDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ---S 235 D S SV GIT L G RAD ++ADD+E NS T RE+L ++FA++ + + Sbjct: 134 PDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPT 193 Query: 236 GRTIYLGTPQSSDSIYNSLP-GRGYNVRIWPGRFPTA-EQRPYYGEYLAPLLCELMDKYP 293 R IYLGTPQ+ ++Y L RGY IWP +P + E+ YYGE LAP+L E + Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGERLAPMLREEFND-- 251 Query: 294 QLMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSEN 353 G QG P +P E LR++E + G + F LQ MLN + DAE+YPL+ + Sbjct: 252 ------GFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRD 305 Query: 354 IITMAL----------------RPGDDLPLEVKRGYDFQDYIVEGKSYRFAKPHGISTEL 397 I L ++LP +G D Y H S Sbjct: 306 AIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSY------------HSCSQNT 353 Query: 398 APAHGICFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLA 457 IDP+G GK DETG+A LNG IY++ GG + GY K + LA Sbjct: 354 GQYQQRILVIDPSGRGK-------DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLA 406 Query: 458 ELVAKYKPNVVKIEQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPII 517 + ++K V E NFG G VF P+L +++ ++E+ G KELRI D LEP++ Sbjct: 407 KKAKQWKVQTVVFESNFGDGMFGKVFSPVLLKHHA-AALEEIRARGMKELRICDTLEPVL 465 Query: 518 ARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACN 577 + L+I + + + T + + Y +QL + R++ A+ HDDRLDALA Sbjct: 466 STHRLVIRDEVIREDYQTARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVE 525 Query: 578 HWAEQLIVDQKKVRVQAAEAALEAFWKDPMN 608 + +D KV + EA LE + P++ Sbjct: 526 FLRSTMELDAVKVEAEVLEAFLEEHMEHPIH 556 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 273 bits (699), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 193/569 (33%), Positives = 277/569 (48%), Gaps = 55/569 (9%) Query: 61 NFNTFLTDVMVELGFTV-SKIQADIGKFMVNG-GKRVMIQAQRSQAKTTIAAVFCVWQLI 118 +F FL + L V +K Q D+ K + NG K+ ++QA R K+ I F VW L Sbjct: 18 DFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLW 77 Query: 119 HDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRK 178 DP+ ++LI+SA +A S + II + L ++P G R SV FD+ + K Sbjct: 78 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPA--K 133 Query: 179 LDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ---S 235 D S SV GIT L G RAD ++ADD+E NS T RE+L ++FA++ + S Sbjct: 134 PDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLTS 193 Query: 236 GRTIYLGTPQSSDSIYNSLP-GRGYNVRIWPGRFP-TAEQRPYYGEYLAPLLCELMDKYP 293 R IYLGTPQ+ ++Y L RGY IWP +P T E+ YY + LAP+L D+ P Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEYDENP 253 Query: 294 QLMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSEN 353 + ++G P +P + LR++E + G + F LQ MLN + DAE+YPL+ + Sbjct: 254 EALAG--------TPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRD 305 Query: 354 IITMALR-----------PG-----DDLPLEVKRGYDFQDYIVEGKSYRFAKPHGISTEL 397 I AL P +DLP +G D Y H S Sbjct: 306 AIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTY------------HDCSNNS 353 Query: 398 APAHGICFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLA 457 IDP+G GK DETG+A LNG IY++ GG + GY K + LA Sbjct: 354 GQYQQKILVIDPSGRGK-------DETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLA 406 Query: 458 ELVAKYKPNVVKIEQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPII 517 + ++ V E NFG G VF PIL +++ C++E+ G KE+RI D LEP++ Sbjct: 407 KKAKQWGVQTVVYESNFGDGMFGKVFSPILLKHHN-CAMEEIRARGMKEMRICDTLEPVM 465 Query: 518 ARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACN 577 L+I + + + + + Y +Q+ ITR++ AL HDDRLDALA Sbjct: 466 QTHRLVIRDEVIRADYQSARDVDGKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIE 525 Query: 578 HWAEQLIVDQKKVRVQAAEAALEAFWKDP 606 + E + +D KV + LE P Sbjct: 526 YLRESMQLDSVKVEGEVLADFLEEHMMRP 554 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 273 bits (697), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 192/569 (33%), Positives = 277/569 (48%), Gaps = 55/569 (9%) Query: 61 NFNTFLTDVMVELGFTV-SKIQADIGKFMVNG-GKRVMIQAQRSQAKTTIAAVFCVWQLI 118 +F FL + L V +K Q D+ K + NG K+ ++QA R K+ I F VW L Sbjct: 18 DFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLW 77 Query: 119 HDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRK 178 DP+ ++LI+SA +A S + II + L ++P G R SV FD+ + Sbjct: 78 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKP--RPGQRDSVISFDVGPA--N 133 Query: 179 LDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ---S 235 D S SV GIT L G RAD ++ADD+E NS T RE+L ++FA++ + S Sbjct: 134 PDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLPS 193 Query: 236 GRTIYLGTPQSSDSIYNSLP-GRGYNVRIWPGRFP-TAEQRPYYGEYLAPLLCELMDKYP 293 R IYLGTPQ+ ++Y L RGY IWP +P T E+ YY + LAP+L D+ P Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEYDENP 253 Query: 294 QLMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSEN 353 + ++G P +P + LR++E + G + F LQ MLN + DAE+YPL+ + Sbjct: 254 EALAG--------TPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRD 305 Query: 354 IITMALR-----------PG-----DDLPLEVKRGYDFQDYIVEGKSYRFAKPHGISTEL 397 I AL P +DLP +G D Y H S Sbjct: 306 AIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTY------------HDCSNNS 353 Query: 398 APAHGICFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLA 457 IDP+G GK DETG+A LNG IY++ GG + GY K + LA Sbjct: 354 GQYQQKILVIDPSGRGK-------DETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLA 406 Query: 458 ELVAKYKPNVVKIEQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPII 517 + ++ V E NFG G VF PIL +++ C++E+ G KE+RI D LEP++ Sbjct: 407 KKAKQWGVQTVVYESNFGDGMFGKVFSPILLKHHN-CAMEEIRARGMKEMRICDTLEPVM 465 Query: 518 ARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACN 577 L+I + + + + + + Y +Q+ ITR++ AL HDDRLDALA Sbjct: 466 QTHRLVIRDEVIRADYQSARDVDGKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIE 525 Query: 578 HWAEQLIVDQKKVRVQAAEAALEAFWKDP 606 + E + +D KV + LE P Sbjct: 526 YLRESMQLDSVKVEGEVLADFLEEHMMRP 554 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 271 bits (693), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 191/556 (34%), Positives = 281/556 (50%), Gaps = 32/556 (5%) Query: 61 NFNTFLTDVMVELGFTV-SKIQADIGKFMVNG-GKRVMIQAQRSQAKTTIAAVFCVWQLI 118 +F FL + L V ++ Q D+ K + G +R ++QA R K+ I F VW+L Sbjct: 8 DFVFFLFVLWKALSLPVPTRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVWKLW 67 Query: 119 HDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRK 178 ++P+ + +I+SA +A S + RII M L+ ++P +G R +V FD+ + K Sbjct: 68 NNPDLKFMIVSASKERADANSIFIKRIIDLMPQLKELKP--KQGQRDAVISFDVGPA--K 123 Query: 179 LDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQSGRT 238 D S SV GIT L G RAD L+ADD+E NS T R++L K+F +I + G T Sbjct: 124 PDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLSELVKEFDAILKPGGT 183 Query: 239 I-YLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQR-PYYGEYLAPLLCELMDKYPQLM 296 I YLGTPQ+ ++Y L GRGY IWP R+P + YG+ LAP+L +++ P+ Sbjct: 184 IIYLGTPQNEMTLYRELEGRGYTTTIWPARYPRDRKDWQSYGDRLAPMLQAELEEDPESF 243 Query: 297 SGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIIT 356 P + + L+++E G + F LQ MLN + DAE+YPLK ++I Sbjct: 244 YWR--------PTDEVRFDDTDLKERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDLIV 295 Query: 357 MALRPGDD------LPLEVKRGYDFQDYIVEGKSYRFAKPHGISTELAPAHGICFYIDPA 410 L P LP + D + + G SY + G + + IDP+ Sbjct: 296 ADLDPASSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVG--SAFSSYTQKILVIDPS 353 Query: 411 GGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKI 470 G GK DETG+A LNG I+ + GG++GGY+ + LA++ K+K N I Sbjct: 354 GRGK-------DETGYAVLYQLNGYIFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEYVI 406 Query: 471 EQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALS 530 E NFG G +F P+ + +V + GQKELRI DVLEPI+ LI+ A+ Sbjct: 407 EGNFGDGMYLELFKPVAARIHP-AAVTEVKSKGQKELRICDVLEPIMGSHRLIVNAAAIV 465 Query: 531 GEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQKKV 590 + + S V Y +Q+ I+R+R AL HDDRLDALA + E + D K Sbjct: 466 QDYQSASDKDGVRNPIYSLFYQMTRISRERGALAHDDRLDALAIGVQFFVESMAKDANKG 525 Query: 591 RVQAAEAALEAFWKDP 606 + E LE ++P Sbjct: 526 EREVTEEWLEEQMENP 541 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 271 bits (693), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 185/553 (33%), Positives = 271/553 (49%), Gaps = 54/553 (9%) Query: 78 SKIQADIGKFMVNG-GKRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQAT 136 +K Q D+ + + NG K+ ++QA R K+ I F VW L DP+ ++LI+SA +A Sbjct: 37 TKCQIDMARCLANGDNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERAD 96 Query: 137 DISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG 196 S + II + L ++P G R SV FD+ + K D S SV GIT L G Sbjct: 97 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPA--KPDHSPSVKSVGITGQLTG 152 Query: 197 RRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ---SGRTIYLGTPQSSDSIYNS 253 RAD ++ADD+E NS T RE+L ++FA++ + + R IYLGTPQ+ ++Y Sbjct: 153 SRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKE 212 Query: 254 LP-GRGYNVRIWPGRFPTA-EQRPYYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEP 311 L RGY IWP +P + E+ YYG+ LAP+L E + G QG P +P Sbjct: 213 LEDNRGYTTIIWPALYPRSREEDLYYGDRLAPMLREEFND--------GFEMLQGQPTDP 264 Query: 312 SFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIITMAL------------ 359 E LR++E + G + F LQ MLN + DAE+YPL+ + I L Sbjct: 265 VRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWL 324 Query: 360 ----RPGDDLPLEVKRGYDFQDYIVEGKSYRFAKPHGISTELAPAHGICFYIDPAGGGKG 415 ++LP +G D Y H S IDP+G GK Sbjct: 325 PNRQNRNEELPNVGLKGDDIHSY------------HSCSQNTGQYQQRILVIDPSGRGK- 371 Query: 416 KGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIEQNFG 475 DETG+A LNG IY++ GG + GY K + LA+ ++K V E NFG Sbjct: 372 ------DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFG 425 Query: 476 YGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSGEAST 535 G VF P+L +++ ++E+ G KELRI D LEP+++ L+I + + + T Sbjct: 426 DGMFGKVFSPVLLKHHA-AAMEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQT 484 Query: 536 LSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQKKVRVQAA 595 + + Y +QL + R++ A+ HDDRLDALA + +D KV + Sbjct: 485 ARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVEAEVL 544 Query: 596 EAALEAFWKDPMN 608 EA LE + P++ Sbjct: 545 EAFLEEHMEHPIH 557 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 269 bits (688), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 179/521 (34%), Positives = 264/521 (50%), Gaps = 33/521 (6%) Query: 78 SKIQADIGKFMVNGG-KRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQAT 136 ++ Q D+ + + G +R ++QA R K+ I F VW+L ++P+ + +I+SA +A Sbjct: 36 TRCQKDMARKLAAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERAD 95 Query: 137 DISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG 196 S + RII + L ++P + D SV FD+ L K D S SV GIT L G Sbjct: 96 ANSIFIKRIIDLLPFLHELKPRPEQRD--SVISFDV--GLAKPDHSPSVKSVGITGQLTG 151 Query: 197 RRADTLLADDIESQKNSLTALMREQLLAKTKDF-ASINQSGRTIYLGTPQSSDSIYNSLP 255 RAD L+ADD+E NS T R++L K+F A + +G IYLGTPQ ++Y L Sbjct: 152 SRADILIADDVEVPNNSATQAARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELE 211 Query: 256 GRGYNVRIWPGRFPT-AEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEPSFI 314 RGY IWP R+P YG LAP+L + + + P+ A P +P Sbjct: 212 NRGYKTTIWPARYPKDMNDLETYGNRLAPMLKDELMENPE--------AYWWQPTDPVRF 263 Query: 315 GEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIITMALRPGDDLPLEVKRGYD 374 +E LR++E G + F LQ MLN + DAE+YPLK + I AL D PL + Sbjct: 264 DDEDLRERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDFIVAALEV-DKAPLTYGWLPN 322 Query: 375 FQDYI-------VEGKSYRFAKPHGISTELAPAHGICFYIDPAGGGKGKGTHGGDETGWA 427 Q+ + ++G +Y + A IDP+G GK DETG+ Sbjct: 323 PQNLLQNVPQVGLKGDTYH--RYDVADKRQASYTSKIMAIDPSGRGK-------DETGYC 373 Query: 428 CTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIEQNFGYGALRAVFLPIL 487 FLNG IY++ GG +GGY+ + LA++ ++ N V E NFG G +F P+L Sbjct: 374 VLYFLNGYIYLMETGGFRGGYEDSTLEALAKVAKRWNVNEVLCEGNFGDGMFLKIFSPVL 433 Query: 488 REYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNRITY 547 + C++ + TGQKE+RI D LEP++ +++ A+ + T + I Y Sbjct: 434 NRVH-RCALTETKSTGQKEMRIADTLEPVMGAHRIVVMESAIQKDYQTARNVDGTHDIKY 492 Query: 548 CFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQK 588 +QL +TR+R AL HDDRLDA A ++ E L D + Sbjct: 493 SMFYQLTRLTRERGALAHDDRLDAFAIGVAYFVEMLEKDSQ 533 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 267 bits (683), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 187/557 (33%), Positives = 285/557 (51%), Gaps = 40/557 (7%) Query: 78 SKIQADIGKFMVNGG-KRVMIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQAT 136 +K Q D+ + + +G K+ ++QA R K+ I F VW L DP+ +VLI+SA +A Sbjct: 36 TKCQIDMARTLADGDHKKFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERAD 95 Query: 137 DISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG 196 S + II + L ++P G R SV FD+ L K D S SV GIT L G Sbjct: 96 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDV--GLAKPDHSPSVKSVGITGQLTG 151 Query: 197 RRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQ---SGRTIYLGTPQSSDSIYNS 253 RAD ++ADD+E NS T+ RE+L +FA++ + + R IYLGTPQ+ ++Y Sbjct: 152 SRADIIIADDVEVPGNSSTSSAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKE 211 Query: 254 LP-GRGYNVRIWPGRFPTAEQRP-YYGEYLAPLLCELMDKYPQLMSGGGLNADQGIPIEP 311 L +GY+ IWP ++P + YYG+ LAP+L D+ +L+ +G P +P Sbjct: 212 LEDNKGYSTVIWPAQYPRNDAEALYYGDRLAPMLKAEYDEGFELL--------RGQPTDP 263 Query: 312 SFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIITMALRPGDD------L 365 + LR++E + G + + LQ MLN + DAE+YPL+ + I A+ P L Sbjct: 264 VRFDTDDLRERELEYGKAGYTLQFMLNPNLSDAEKYPLRLRDAIVCAVDPERAPLSYQWL 323 Query: 366 PLEVKRGYDFQDYIVEGKS-YRFAKPHGISTELAPAHGICFYIDPAGGGKGKGTHGGDET 424 P R + + ++G + F H S+ A IDP+G GK DET Sbjct: 324 PNRQNRNEELPNVGLKGDDIHSF---HTCSSRTAEYQSKILVIDPSGRGK-------DET 373 Query: 425 GWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIEQNFGYGALRAVFL 484 G+A LNG IY++ GG +GGYD + +LA+ ++K V E NFG G +F Sbjct: 374 GYAVLYSLNGYIYLMEVGGFRGGYDDATLEKLAKKAKQWKVQTVVHESNFGDGMFGKIFS 433 Query: 485 PILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNR 544 P+L +++ + ++E+ G KE+RI D +EP++ LII + + + T + Sbjct: 434 PVLLKHH-KAALEEIRAKGMKEMRICDTIEPLMGSHKLIIRDEVIREDYQTSRDLDGKHD 492 Query: 545 ITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQKKVRVQAAEAALEAFWK 604 + Y +Q+ +TR+R A+ HDDRLDA+A E ++VD K + E LE F + Sbjct: 493 VRYSAFYQMTRMTRERGAVAHDDRLDAIALGIEWLREGMLVDSK---IGEEEMTLE-FLE 548 Query: 605 DPMNHNRIKTRQQMSFD 621 M I Q S D Sbjct: 549 AHMEKQTIGGDQIHSLD 565 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 262 bits (670), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 191/563 (33%), Positives = 279/563 (49%), Gaps = 32/563 (5%) Query: 60 RNFNTFLTDVMVELGF-TVSKIQADIGKFMVNGG-KRVMIQAQRSQAKTTIAAVFCVWQL 117 R+F FL + L +K Q D+ K + G +R ++QA R K+ I F VW+L Sbjct: 16 RSFVAFLFVLWRALNLPKPTKCQIDMAKKLSAGDERRFILQAFRGIGKSFITCAFVVWKL 75 Query: 118 IHDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLR 177 ++P+ + +I+SA +A S + RII + L ++P G R S FD+ + Sbjct: 76 WNNPDLKFMIVSASKERADANSVFIKRIIDLLPFLHELKP--GPGQRDSSLAFDVGPA-- 131 Query: 178 KLDKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASINQSGR 237 K D S SV GIT L G RAD L+ADD+E NS T R+ L K+F +I + G Sbjct: 132 KPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDHLGELVKEFDAILKPGG 191 Query: 238 TI-YLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQRPY--YGEYLAPLLCELMDKYPQ 294 TI YLGTPQ+ ++Y L GRGY IWP R+P +Q + YG LAP+L + Sbjct: 192 TIIYLGTPQTEMTLYRELEGRGYVTTIWPARYPK-DQADWDSYGPRLAPMLAA------E 244 Query: 295 LMSGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENI 354 L + G L P + ++ LR++E G F LQ MLN + D E+YPLK + Sbjct: 245 LQADGSLFW---APTDEVRFDDKDLRERELSYGKGGFALQFMLNPNLSDMEKYPLKLRDF 301 Query: 355 I--TMALRPGDDLPLEVKRGYDFQD--YIVEGKSYRFAKPHGISTELAPAHGICFYIDPA 410 I T A G + + + +V K RF + + A IDP+ Sbjct: 302 IVGTFAQDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRYESVGQATASYAQKILVIDPS 361 Query: 411 GGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKI 470 G GK DETG+A LNG I+++ GG +GGY+ + LA + +K N + + Sbjct: 362 GRGK-------DETGYAVLYQLNGYIFLMDAGGFRGGYEDTVLQALANIAKIHKVNEIVV 414 Query: 471 EQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALS 530 E NFG G + P++ + C++ + GQKELRI DVLEP++ L+I + Sbjct: 415 EGNFGDGMYIKLLAPVVTATFP-CAITEVKSKGQKELRICDVLEPVLGSHKLVIQESLIE 473 Query: 531 GEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLIVDQKKV 590 + T +Y ++QL ITR+R +L HDDRLDALA + E L D K Sbjct: 474 KDYRTALNADGTTDTSYSLLYQLTRITRERGSLAHDDRLDALAIGVQFFTEALERDSKVG 533 Query: 591 RVQAAEAALEAFWKDP-MNHNRI 612 + + LE+ +D M H+R+ Sbjct: 534 ESEMLQEFLESHMEDALMGHDRL 556 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 235 bits (599), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 171/561 (30%), Positives = 277/561 (49%), Gaps = 37/561 (6%) Query: 61 NFNTFLTDVMVELGF-TVSKIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCVWQLIH 119 +F FL + +L + ++ Q I ++ +G KR+ IQA R K+ I F +W L + Sbjct: 11 DFKLFLQALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFN 70 Query: 120 DPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKL 179 D E +++IISA +A ++S + ++I+ L+ +RP KS R S FD+ S + Sbjct: 71 DAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRP-KSDDARWSRISFDVLCSPHQ- 128 Query: 180 DKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASI---NQSG 236 + SV GIT L G RAD ++ DDIE NS+T LMRE+LL + SI Sbjct: 129 --APSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDS 186 Query: 237 RTIYLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLM 296 R +YLGTPQ++ ++Y L R Y +WP R+P + PY G +AP L E +D Sbjct: 187 RIMYLGTPQTTFTVYRKLAERAYRPFVWPARYP-KDITPYEG-LIAPQLQEDIDN----- 239 Query: 297 SGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIIT 356 A+ G +P ++ L+ +E G S F LQ ML+T + DAE++PLK +++ Sbjct: 240 -----GAESGTVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPLKMADLVI 294 Query: 357 MALRPGDDLPLEVKRGYDFQDYIVEGKSY-----RFAKPHGISTELAPAHGICFYIDPAG 411 ++ P + P V D Q+ I + + F P + E P +DP+G Sbjct: 295 TSVNPTE-APDNVIWCSDPQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSG 353 Query: 412 GGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNVVKIE 471 G DET + NG +Y+ + GY +L + + KY + +E Sbjct: 354 -------RGTDETAACYLSQKNGFLYLHEMRAYRDGYSDATLLDILKGCKKYNATTLVVE 406 Query: 472 QNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHDALSG 531 NFG G + +F L++ V++ +KE RIID LEP++ + LI+ + Sbjct: 407 TNFGDGIVSELFKKHLQQTKQAIFVDEVRANVRKEDRIIDSLEPVLNQHRLIVDRGVIDW 466 Query: 532 EASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQL-IVDQKKV 590 + S+ P +R+ Y +Q++ + R + A+ HDDRLD LA ++ + L I Q+++ Sbjct: 467 DYSSNKDCPPESRLLYMLFYQMSRMCRMKFAVKHDDRLDCLAQGVKYFTDSLSISAQEQI 526 Query: 591 RVQAAEA---ALEAFWKDPMN 608 ++ E L+ F DP + Sbjct: 527 NLRKREEWEDILQGFLDDPQS 547 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 216 bits (550), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 167/564 (29%), Positives = 267/564 (47%), Gaps = 51/564 (9%) Query: 61 NFNTFLTDVMVELGF-TVSKIQADIGKFMVNGGKRVMIQAQRSQAKTTIAAVFCVWQLIH 119 +F FL+ V EL ++ Q I ++ +G KR+ I A R K+ I A F +W L Sbjct: 13 DFKFFLSLVWRELDLPKPTRAQLAIADYLQHGPKRLQISAFRGVGKSWITAAFVLWVLFV 72 Query: 120 DPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPDKSKGDRVSVEKFDIHYSLRKL 179 DP+ ++++ISA +A + S ++I++++ L +RP + R S FD+ + K Sbjct: 73 DPDRKIMVISASKERADNFSIFCQKLILDIEWLSHLRP-RDSDQRWSRISFDVGPA--KP 129 Query: 180 DKSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFASI---NQSG 236 ++ SV GIT + G RA ++ DD+E NS T + RE+LL + SI + Sbjct: 130 HQAPSVKSVGITGQMTGSRAHLMVFDDVEVPANSATDMQREKLLQLVSESESILVPDDDA 189 Query: 237 RTIYLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLM 296 R ++LGTPQS+ +IY L R Y +WP R+P + Y LAP L ++K P+L Sbjct: 190 RIMFLGTPQSTFTIYRKLAERSYRPFVWPARYPRDLSK--YEGLLAPQLVADLEKDPELT 247 Query: 297 SGGGLNADQGIPIEPSFIGEEILRDKEQDQGPSWFQLQHMLNTRMMDAERYPLKSENIIT 356 P + F E L ++E G S F LQ ML+T + DAE++PLK +++I Sbjct: 248 WK---------PTDTRF-NELNLMERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQDLIV 297 Query: 357 MALRPGDDLPLEVKRGYDFQD---YI------VEGKSYRFAKPHGISTELAPAHGICFYI 407 L E Y + Y+ V RF P I + P + Sbjct: 298 TPLGA------ECAEAYAWSADPRYMRKELNPVGLPGDRFYGPMYIDEGIVPYSETIVSV 351 Query: 408 DPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKGGYDGKQMLQLAELVAKYKPNV 467 DP+G G DET + NG I+V + GY + + + L +YK + Sbjct: 352 DPSG-------RGTDETVAVVLSQANGYIFVRDMKAFRDGYSDETLSDIVRLGKRYKASK 404 Query: 468 VKIEQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAHD 527 + +E NFG G + +F + + E+ + +KE RII+ LEP++ + LII Sbjct: 405 LLVESNFGDGMITELFKRHISQMGGGMDTEEVRASARKEERIIETLEPVMNQHKLIIDPK 464 Query: 528 ALSGEASTLSIHPDV---NRITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQLI 584 + S+ +PD R+ Y +Q++ + R++ A+ HDDR+DAL+ ++ + Sbjct: 465 VWEYDYSS---NPDAAPEKRLEYMLGYQMSRMCREKGAVKHDDRVDALSQGVQYYVDA-- 519 Query: 585 VDQKKVRVQAAEAALEAFWKDPMN 608 V Q + QA E WK M Sbjct: 520 VAQSAFKQQALRKHEE--WKAMMT 541 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 75.1 bits (183), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%) Query: 96 MIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGS----QATDISTLVIRIIMNMDV 151 +I R+ K+ + A +C W + PE +L ISA + Q + ++ + N Sbjct: 73 LIMLPRAHLKSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRYF 132 Query: 152 LECIRPDKSKGDRVSVEKFDIHYSLRKLD--KSASVSCCGITANLQGRRADTLLADDIES 209 E I P + K ++ S I + RK + + A+++ G+T N G AD ++ADD+ Sbjct: 133 PEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDLVV 192 Query: 210 QKNSLTALMREQLLAKTKDFASI-NQSGRTIYLGTPQSSDSIYNSLPGRGYNV 261 +N+ T RE + K+ F SI N G T+ GT IY + + Y++ Sbjct: 193 PENAYTEDGRESVQKKSSQFTSIRNAGGFTMACGTRYHPSDIYATWRSQKYDI 245 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 47.4 bits (111), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 12/203 (5%) Query: 101 RSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDISTLVIRIIMNMDVLECIRPD-- 158 R K+ AV+ WQ+ +P + + A S A + I+ I+ D + PD Sbjct: 71 RDHQKSHCIAVWVCWQIFKNPAVTIAYVCATESLAI-LQLYDIKQILTSDEFTRLSPDMI 129 Query: 159 ---KSKGDRVSVEKFDIHYSLRKLDK--SASVSCCGITANLQGRRADTLLADDIESQKNS 213 + K + + + + +RK ++ +V G+ +N G + ++ DD+ KNS Sbjct: 130 EPMEKKRQKWAETAIIVDHPIRKKERPRDPTVLATGLDSNNIGAHCNIMVKDDVVIDKNS 189 Query: 214 LTALMREQLLAKTKDFASI-NQSGRTIYLGTPQSSDSIYNSLPGRGYNVRIWPGRFPTAE 272 LT R+++ AK +SI G +GT Y +L V W G E Sbjct: 190 LTETARQKVEAKAGHLSSILTTDGMEFCVGTRYHPKDHYQTLIDMTEEV--WEGDQLVGE 247 Query: 273 QRPYYGEYLAPLLCELMDKYPQL 295 RP Y + + E + +P++ Sbjct: 248 -RPVYAVHTRVVEVEGVFLWPRM 269 Score = 24.3 bits (51), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Query: 478 ALRAVFLPILREY--YTECSV-----EDDFVTGQKELRIIDVLEPIIARGSL 522 A + V + LREY +C + + + +G KE RI LEP+ G + Sbjct: 412 AAQEVIIEALREYAEKEQCPIRIKAYKPNSQSGDKETRISQTLEPLYENGDI 463 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 33.5 bits (75), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 31/223 (13%) Query: 92 GKRVMIQAQRSQAKTT-IAAVFCVWQLIHDPEHRVLIISAGGSQATDISTLVIRIIMNMD 150 G+ I A R AK+T ++ +F +W ++ +H LII QA + + + Sbjct: 84 GQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNP 143 Query: 151 VLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG-----RRADTLLAD 205 L P + RV + + + D A V G ++G R D ++ D Sbjct: 144 RLAMDFPQGAGKGRV----WQVGTIVTAND--AKVQVFGSGKRMRGLRHGPHRPDLVVGD 197 Query: 206 DIESQKNSLTALMREQL---LAKTK-DFASINQSGRTIYLGTPQSSDSIYNSLPGRGYNV 261 D+E+ +N + R++L L KT S + + I +GT DS+ + L Sbjct: 198 DLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLL------ 251 Query: 262 RIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNAD 304 + P ++R + P +L +K+ +L+ LN+D Sbjct: 252 -----KNPLWKRRKFKAIIEWPHRMDLWEKWEELL----LNSD 285 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 33.5 bits (75), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 31/223 (13%) Query: 92 GKRVMIQAQRSQAKTT-IAAVFCVWQLIHDPEHRVLIISAGGSQATDISTLVIRIIMNMD 150 G+ I A R AK+T ++ +F +W ++ +H LII QA + + + Sbjct: 84 GQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNP 143 Query: 151 VLECIRPDKSKGDRVSVEKFDIHYSLRKLDKSASVSCCGITANLQG-----RRADTLLAD 205 L P + RV + + + D A V G ++G R D ++ D Sbjct: 144 RLAMDFPQGAGKGRV----WQVGTIVTAND--AKVQVFGSGKRMRGLRHGPHRPDLVIGD 197 Query: 206 DIESQKNSLTALMREQL---LAKTK-DFASINQSGRTIYLGTPQSSDSIYNSLPGRGYNV 261 D+E+ +N + R++L L KT S + + I +GT DS+ + L Sbjct: 198 DLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLL------ 251 Query: 262 RIWPGRFPTAEQRPYYGEYLAPLLCELMDKYPQLMSGGGLNAD 304 + P ++R + P +L +K+ +L+ LN+D Sbjct: 252 -----KNPLWKRRKFKAIIEWPHRMDLWEKWEELL----LNSD 285 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 32.7 bits (73), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 44/181 (24%) Query: 92 GKRVMIQAQRSQAKTTIAAV-FCVWQLIHDPEHRVLIISAGGSQATDISTLVIRII---- 146 +R ++ A R K+T+ +V + +W++ +P+ RVL+ G+ +S IR + Sbjct: 56 NRRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLV----GTNLKRLSRAFIRELRQYF 111 Query: 147 ----MNMDVLE-------CIRPDKSKGDR-----------------VSVEKFDIHYSLRK 178 + +V + P S DR + + +S+ Sbjct: 112 EDTWLQQNVWNVRPHIEGALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKLIWSMEA 171 Query: 179 LD-------KSASVSCCGITANLQGRRADTLLADDIESQKNSLTALMREQLLAKTKDFAS 231 L K +V I + G D L+ DDI +NS T E +L T+D S Sbjct: 172 LQVIRPTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEWTRDLES 231 Query: 232 I 232 + Sbjct: 232 V 232 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 96 MIQAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDISTLVIRIIMN 148 ++Q R K+T+ + +W++ +P R+L S ++S IR + N Sbjct: 90 LLQMPRGHLKSTLTVGYIMWRIYRNPNIRML----HASNIRELSEAFIRELRN 138 Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 26/192 (13%) Query: 387 FAKPHGISTELAPAHGICFYIDPAGGGKGKGTHGGDETGWACTAFLNGNIYVLGYGGIKG 446 F P G L P G+ F I + G +T L+ + +G+ ++ Sbjct: 384 FRHPDGSLDSLEPVMGVDFAISLSSRADYTAIAVGGKTFQRKLCALD---FSVGHYSVEH 440 Query: 447 GYDGKQMLQLAELVAKYKPNVVKIEQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKE 506 D ++A LV + + +E R + L E +C+V D G K Sbjct: 441 TLD-----EIARLVVLWNVKRMYVETIAFQSLYRDRIIKHLAEKKIQCAVLDYKPVGNKH 495 Query: 507 LRIIDVLEPIIARGSLIIAHDALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHD 566 RI L +G+++ + L +A M+ N R A D Sbjct: 496 KRIESHLSSYFNQGNVVF-NSRLKNQA--------------IVMNTFNFFGR---ASAKD 537 Query: 567 DRLDALAGACNH 578 D DALA H Sbjct: 538 DPPDALAVVAEH 549 >gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: putative large terminase subunit # Family: family:all:144 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071818;genbank:gi:11863101;genbank:GeneID :1257603 Length = 467 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 23/117 (19%) Query: 467 VVKIEQNFGYGALRAVFLPILREYYTECSVEDDFVTGQKELRIIDVLEPIIARGSLIIAH 526 + K E+ G + +L L + YT + D VTG K R + V Sbjct: 356 IAKEEEPGSSGKIVTDYLRSLLQGYT---LRADRVTGDKTTRALPV-------------- 398 Query: 527 DALSGEASTLSIHPDVNRITYCFMHQLNLITRDRDALVHDDRLDALAGACNHWAEQL 583 S A + I T F+ +L + VHDD++DA +GA N A ++ Sbjct: 399 ---SSYAESFRIKVLRASWTQAFLDELEAFPSEG---VHDDQVDAFSGAFNTLAMEM 449 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 190 ITANLQGRRADTLLADDIESQK-NSLTALMREQLLAKTKDFASINQSGRTIYLGTPQSSD 248 + ++G RA L+ DDI +K + T + + + A + GRT+ +GT + D Sbjct: 173 LGGGIEGDRAHLLILDDIIKEKGDGDTEDVLDWIEAVC--VPMVKDHGRTVVIGTRKRPD 230 Query: 249 SIYNSL 254 IY Sbjct: 231 DIYTHF 236 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 564 VHDDRLDALAGACN 577 VHDD++DA +GA N Sbjct: 430 VHDDQVDAFSGAFN 443 >gi|12972|lcl|protein:vir:80678 Length: 503 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285578;genbank:gi:148727084;genbank:Ge neID:5247049 Length = 503 Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 583 LIVDQKKVRVQAAEAALEAFWKDPMNHNRIKTRQQMSFDHSRNMLSYRRG 632 ++V V V+A +A LE ++H R +R+ M R+ + R+G Sbjct: 408 VVVADTGVYVEACQAFLEGVRSGVISHPRADSRRDMLDIAVRSAVQKRKG 457 >gi|6106|lcl|protein:vir:95799 Length: 180 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950595;genbank:gi:119953790;genbank:GeneI D:5076869 Length = 180 Score = 23.9 bits (50), Expect = 6.2, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 15/22 (68%) Query: 318 ILRDKEQDQGPSWFQLQHMLNT 339 ++ K+QD G FQ++H +N+ Sbjct: 16 VIDQKKQDAGKVRFQVEHTINS 37 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 23.9 bits (50), Expect = 6.5, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 81 QADIGKFMVNGGKRVMI-QAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDI 138 Q D+ K M KR+ + R KTT+ A+F + + + V I++ GS + ++ Sbjct: 143 QRDMLKIM--SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV 199 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 81 QADIGKFMVNGGKRVMI-QAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDI 138 Q D+ K M KR+ + R KTT+ A+F + + + V I++ GS + ++ Sbjct: 143 QRDMLKIM--SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV 199 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 23.5 bits (49), Expect = 7.5, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 81 QADIGKFMVNGGKRVMI-QAQRSQAKTTIAAVFCVWQLIHDPEHRVLIISAGGSQATDI 138 Q D+ K M KR+ + R KTT+ A+F + + + V I++ GS + ++ Sbjct: 143 QRDMLKIM--SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV 199 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.137 0.406 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276,643 Number of Sequences: 514 Number of extensions: 12757 Number of successful extensions: 156 Number of sequences better than 100.0: 34 Number of HSP's better than 100.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 42 length of query: 634 length of database: 206,069 effective HSP length: 77 effective length of query: 557 effective length of database: 166,491 effective search space: 92735487 effective search space used: 92735487 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)