BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019725.1_cdsid_YP_007112712.1 [gene=B508_00235] [protein=hypothetical protein] [protein_id=YP_007112712.1] [location=23053..23634] (193 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|3775|lcl|protein:vir:107670 Length: 222 # NCBI annotation: pu... 372 e-105 gi|12390|lcl|protein:vir:79636 Length: 220 # NCBI annotation: Ts... 273 1e-75 gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hy... 223 1e-60 gi|6571|lcl|protein:vir:104349 Length: 218 # NCBI annotation: pu... 203 1e-54 gi|9240|lcl|protein:vir:97081 Length: 210 # NCBI annotation: hyp... 37 2e-04 gi|13090|lcl|protein:vir:81065 Length: 210 # NCBI annotation: p1... 36 4e-04 gi|19658|lcl|protein:vir:10369 Length: 210 # NCBI annotation: co... 35 4e-04 gi|6897|lcl|protein:vir:106581 Length: 159 # NCBI annotation: pu... 28 0.066 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 21 8.6 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 21 8.6 >gi|3775|lcl|protein:vir:107670 Length: 222 # NCBI annotation: putative major tail protein # Family: family:all:47 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003904;genbank:gi:45686320;genbank:GeneID :2773010 Length = 222 Score = 372 bits (955), Expect = e-105, Method: Compositional matrix adjust. Identities = 176/180 (97%), Positives = 179/180 (99%) Query: 1 MHLPNGAQIFVETSRGVEVEATAVTNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRV 60 MHLPNGAQIFVETSRGVEVEATA+TNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRV Sbjct: 1 MHLPNGAQIFVETSRGVEVEATAITNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRV 60 Query: 61 LIVTDAQETSITLAGIDTSDTLVFPTGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQ 120 LIVTDAQETSITLAGIDTSDTLVFP GGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQ Sbjct: 61 LIVTDAQETSITLAGIDTSDTLVFPAGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQ 120 Query: 121 CLSDDKEQQIPTFKSAISLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKANEMRMW 180 CLSDDKEQQIPTFKSA+SLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKA+EMRMW Sbjct: 121 CLSDDKEQQIPTFKSAVSLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKASEMRMW 180 >gi|12390|lcl|protein:vir:79636 Length: 220 # NCBI annotation: TsbA # Family: family:all:47 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285531;genbank:gi:148734514;genbank:Ge neID:5219994 Length = 220 Score = 273 bits (697), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 125/182 (68%), Positives = 148/182 (81%), Gaps = 2/182 (1%) Query: 1 MHLPNGAQIFVETSRGVEVEATAVTNAENPVATVASKGD-LAKGDYVIVTQSTWAKMVSR 59 MHLPNGAQIF+E +R V AT V+NA P T+ S GD KGDY+IVT S+W K++ R Sbjct: 1 MHLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDR 60 Query: 60 VLIVTDAQETSITLAGIDTSDTLVFPTGG-TMSFAKITGWTEIPCVQEIGQDGGEQQYYT 118 VL VT+A+ T +T+ GIDT+DT VFP G T SFAKI GWTEIPCVQ++GQDGGEQQYY Sbjct: 61 VLRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYN 120 Query: 119 YQCLSDDKEQQIPTFKSAISLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKANEMR 178 YQCLSDD+EQQ+PT+KSA+SLTYTFAHE+DNPIYP+LRK D SG V A+RMYVPKA EMR Sbjct: 121 YQCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMR 180 Query: 179 MW 180 +W Sbjct: 181 LW 182 >gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277457;genbank:gi:71834099;genbank:GeneID :3562388 Length = 216 Score = 223 bits (568), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 99/179 (55%), Positives = 129/179 (72%) Query: 2 HLPNGAQIFVETSRGVEVEATAVTNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRVL 61 HL NG QIF++ S+ V TA+TNA PV TV A GD+++V S+W+K+ + L Sbjct: 3 HLSNGTQIFLQGSKSESVAVTAITNAAQPVMTVDDASTFAAGDFIVVESSSWSKLSEKQL 62 Query: 62 IVTDAQETSITLAGIDTSDTLVFPTGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQC 121 V + T+IT+ GIDT+D L FP GGT S K+ W E+PCVQ++ DGGEQQ+ TYQC Sbjct: 63 RVVTSTATTITVEGIDTTDPLQFPAGGTASIYKVLTWYEMPCVQDVSTDGGEQQFVTYQC 122 Query: 122 LSDDKEQQIPTFKSAISLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKANEMRMW 180 L+DD+EQQIPT+KSA++ TYTFAHEF NPIYP+LR D SG + A+R YVPKA E+R+W Sbjct: 123 LADDREQQIPTYKSAVNTTYTFAHEFTNPIYPVLRNYDESGALIAIRAYVPKAGEVRLW 181 >gi|6571|lcl|protein:vir:104349 Length: 218 # NCBI annotation: putative major tail protein # Family: family:all:47 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398977;genbank:gi:81343961;genbank:GeneID :3778881 Length = 218 Score = 203 bits (517), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 91/178 (51%), Positives = 123/178 (69%) Query: 2 HLPNGAQIFVETSRGVEVEATAVTNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRVL 61 HL NG Q+ VE SRG + TA++NA +PV TV + GDY++ T S + + + Sbjct: 3 HLSNGTQVLVEGSRGDAIAVTAISNAASPVLTVDDASGIVVGDYLLFTASASTLLADKQV 62 Query: 62 IVTDAQETSITLAGIDTSDTLVFPTGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQC 121 VT TS+T+ GIDTS T FP G T KI W E+PCVQ++ DGGEQQ+ +QC Sbjct: 63 RVTAVSGTSVTVEGIDTSSTTKFPAGLTGEVVKILSWFEVPCVQDVSTDGGEQQFVNFQC 122 Query: 122 LSDDKEQQIPTFKSAISLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKANEMRM 179 LSDD+EQ+IPT+KSA++ T+TFAHE+ NP+YP+LR D SGQV A+R++VP+A EMR+ Sbjct: 123 LSDDREQKIPTYKSAVTNTFTFAHEYTNPVYPVLRDYDESGQVVAIRLFVPRAQEMRL 180 >gi|9240|lcl|protein:vir:97081 Length: 210 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453570;genbank:gi:84662605;genbank:GeneID :5142496 Length = 210 Score = 37.0 bits (84), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 9/157 (5%) Query: 23 AVTNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRVLIVTDAQETSITLAGIDTSDTL 82 A A NP + D+ GD V+V + A ++ V A T L G+D L Sbjct: 24 AAITAANPSVATGTTADV--GD-VVVLSAAGAPYLNNTATVVGAGST---LLGVD-GRRL 76 Query: 83 VFPTGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQCLSDDKEQQ--IPTFKSAISLT 140 + G + + +T + Q G EQ + L D +Q +PT S + +T Sbjct: 77 AGTSSGVVRLTDVGAFTNFSQTIGVSQSGNEQAFAQVNFLEDSSGRQLSVPTTISPLVIT 136 Query: 141 YTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKANEM 177 FA++ D + + + + +R +P + Sbjct: 137 LRFAYDPDASYFDAAKSVSDRNALVVLRRQLPNGDRF 173 >gi|13090|lcl|protein:vir:81065 Length: 210 # NCBI annotation: p14 # Family: family:all:47 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285684;genbank:gi:148727192;genbank:Ge neID:5247110 Length = 210 Score = 35.8 bits (81), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 9/153 (5%) Query: 23 AVTNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRVLIVTDAQETSITLAGIDTSDTL 82 A A NP + D+ GD V+V + A ++ V A T L G+D L Sbjct: 24 AAITAANPSVATGTTADV--GD-VVVLSAAGAPYLNNTATVVGAGST---LLGVD-GRRL 76 Query: 83 VFPTGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQCLSDDKEQQ--IPTFKSAISLT 140 + G + + +T + Q G EQ + L D +Q +PT S + +T Sbjct: 77 AGTSSGVVRLTDVGAFTNFAQTIGVSQSGNEQAFAQVNFLEDASGRQLSVPTTISPLVIT 136 Query: 141 YTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPK 173 FA++ D + + + + +R +P Sbjct: 137 LRFAYDPDASYFDAAKSVSDRNALVVLRRSLPN 169 >gi|19658|lcl|protein:vir:10369 Length: 210 # NCBI annotation: conserved phage protein # Family: family:all:47 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858961;genbank:gi:32128426;genbank:GeneID :2648380 Length = 210 Score = 35.4 bits (80), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 9/157 (5%) Query: 23 AVTNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRVLIVTDAQETSITLAGIDTSDTL 82 A A NP + D+ GD V+V + A ++ V A T L G+D L Sbjct: 24 AAITAANPSVATGTTADV--GD-VVVLSAAGAPFLNNTASVVGAGST---LLGVD-GRRL 76 Query: 83 VFPTGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQCLSDDKEQQ--IPTFKSAISLT 140 + G + + +T + Q G EQ + L D +Q +PT S + +T Sbjct: 77 AGTSSGVVRLTDVGAFTNFAQTIGVSQYGNEQAFAQVNFLEDSSGRQLSVPTTISPLVIT 136 Query: 141 YTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKANEM 177 FA++ D + + + + +R +P + Sbjct: 137 LRFAYDPDATYFDAAKSVSDRNALVVLRRQLPNGDRF 173 >gi|6897|lcl|protein:vir:106581 Length: 159 # NCBI annotation: putative major tail protein # Family: family:all:6477 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958590;genbank:gi:41179249;genbank:GeneID :2717117 Length = 159 Score = 28.5 bits (62), Expect = 0.066, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 25/44 (56%) Query: 98 WTEIPCVQEIGQDGGEQQYYTYQCLSDDKEQQIPTFKSAISLTY 141 W EI ++ I + GG+ + L+DD+ +QI ++A ++ + Sbjct: 42 WDEIADIKTIPELGGDTEKIDVTTLADDRRKQIEGIQNASNVQF 85 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 21.2 bits (43), Expect = 8.6, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 74 AGIDTSDTLVFPTGGTMSFA 93 AGI DT+ GGTMS A Sbjct: 547 AGIIVHDTIFDLMGGTMSIA 566 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 21.2 bits (43), Expect = 8.6, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 74 AGIDTSDTLVFPTGGTMSFA 93 AGI DT+ GGTMS A Sbjct: 547 AGIIVHDTIFDLMGGTMSIA 566 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.317 0.131 0.384 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,768 Number of Sequences: 514 Number of extensions: 3209 Number of successful extensions: 17 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 12 length of query: 193 length of database: 206,069 effective HSP length: 67 effective length of query: 126 effective length of database: 171,631 effective search space: 21625506 effective search space used: 21625506 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 35 (18.1 bits)