BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019725.1_cdsid_YP_007112700.1 [gene=B508_00175] [protein=hypothetical protein] [protein_id=YP_007112700.1] [location=13927..15501] (524 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 1080 0.0 gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: Te... 737 0.0 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 589 e-170 gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: h... 217 2e-58 gi|7243|lcl|protein:vir:103223 Length: 168 # NCBI annotation: pu... 164 3e-42 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 155 8e-40 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 98 2e-22 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 77 7e-16 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 76 1e-15 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 73 1e-14 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 72 1e-14 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 58 3e-10 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 47 5e-07 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 39 1e-04 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 38 4e-04 gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp6... 33 0.008 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 27 0.64 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 27 0.72 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 27 0.72 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 26 1.3 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 26 1.4 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 26 1.4 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 26 1.5 gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: put... 26 1.5 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 25 1.6 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 25 2.1 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 24 3.8 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 24 4.2 gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hyp... 24 5.0 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 23 6.3 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 23 6.9 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/518 (99%), Positives = 517/518 (99%) Query: 1 MIQWEELDATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRR 60 MIQWE+L+ATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRR Sbjct: 6 MIQWEDLNATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRR 65 Query: 61 GNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSNEF 120 GNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSNEF Sbjct: 66 GNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSNEF 125 Query: 121 QELWPCKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLDDID 180 QELWPCKFGTSKDEEMQVLN DGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLDDID Sbjct: 126 QELWPCKFGTSKDEEMQVLNEDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLDDID 185 Query: 181 KPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGIEFDQ 240 KPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGIEFDQ Sbjct: 186 KPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGIEFDQ 245 Query: 241 ISIPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALREAD 300 ISIPALVTEEYGKTLPDWLQPYFERDVL+SEYVELDGVKHYSFWPSKESVHDLLALREAD Sbjct: 246 ISIPALVTEEYGKTLPDWLQPYFERDVLSSEYVELDGVKHYSFWPSKESVHDLLALREAD 305 Query: 301 QYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELND 360 QYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELND Sbjct: 306 QYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELND 365 Query: 361 YTVFCLWGKKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKAS 420 YTVFCLWGKKNDKVYFIDGIRGKWEAPDME+QFTAFVNQAWRHNKSMGVLRKIYVEDKAS Sbjct: 366 YTVFCLWGKKNDKVYFIDGIRGKWEAPDMERQFTAFVNQAWRHNKSMGVLRKIYVEDKAS 425 Query: 421 GTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAF 480 GTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAF Sbjct: 426 GTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAF 485 Query: 481 TYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAG 518 TYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAG Sbjct: 486 TYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAG 523 >gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285519;genbank:gi:148734502;genbank:Ge neID:5220006 Length = 523 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/519 (68%), Positives = 423/519 (81%), Gaps = 1/519 (0%) Query: 1 MIQWEELDATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRR 60 M+ WE+L +KLAIK++S +F+ ++IWF + Q +++ PNWHHLY+ ++EII G R Sbjct: 1 MLIWEDLTKLEKLAIKELSTHDFDTFVKIWFPIQQGEKWIPNWHHLYIARAIDEIIEGVR 60 Query: 61 GNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSNEF 120 +TIFNVTPGSGKTE+ SIH P Y+ LK KVRNLN+SFAD+LVKRNSKRVR++++S E+ Sbjct: 61 KDTIFNVTPGSGKTELLSIHFPPYSYLKLNKVRNLNISFADTLVKRNSKRVRDLVNSREW 120 Query: 121 QELWPCKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPG-FSGMVMLDDI 179 QEL+P K GTSKD+E Q+LN GKV E+IS + GG+ITGSRGGY+TPG +SG V LDD Sbjct: 121 QELYPAKTGTSKDDEFQILNDAGKVRLEMISKSMGGQITGSRGGYITPGVYSGCVTLDDP 180 Query: 180 DKPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGIEFD 239 +KPDDMFSKVKRER M+ KNTIRSRR H+ETPII IQQRLHAQD TWF+MNGGMGIEFD Sbjct: 181 EKPDDMFSKVKRERGQMIAKNTIRSRRAHSETPIIVIQQRLHAQDMTWFLMNGGMGIEFD 240 Query: 240 QISIPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALREA 299 QISIPA+VTEEYGK+LPDWLQP+FE+DVL+SEY+ +DGVK+YSFWPSKES+HDL ALR+A Sbjct: 241 QISIPAMVTEEYGKSLPDWLQPHFEKDVLSSEYIVIDGVKYYSFWPSKESIHDLKALRDA 300 Query: 300 DQYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELN 359 D YTF SQYQQ+PIALGG+ N W+ YYG+ + P P ++DY FITADTAQK GELN Sbjct: 301 DLYTFLSQYQQEPIALGGNAINVGWFQYYGTGEKSTMPKPDRFDYTFITADTAQKEGELN 360 Query: 360 DYTVFCLWGKKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKA 419 DY+V C WG ++YFIDG+RGKWEAP +E QF AFV Q W NK G LRKIYVEDKA Sbjct: 361 DYSVLCYWGMFKGRIYFIDGVRGKWEAPMLETQFKAFVKQCWNRNKECGNLRKIYVEDKA 420 Query: 420 SGTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSA 479 SGTGLIQN RK PI ITP+QR+KDKVTR MDAQPVIK G VVLPE H MLAE +AE +A Sbjct: 421 SGTGLIQNCRKAFPIEITPVQRDKDKVTRCMDAQPVIKNGYVVLPESHHMLAEFLAEAAA 480 Query: 480 FTYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAG 518 FTYDD+HPHDDI+DN DA NIEL D+ ++RMKRLAG Sbjct: 481 FTYDDSHPHDDIMDNLFDAVNIELNLADNAVDRMKRLAG 519 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 589 bits (1519), Expect = e-170, Method: Compositional matrix adjust. Identities = 283/522 (54%), Positives = 375/522 (71%), Gaps = 8/522 (1%) Query: 1 MIQWEELDATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRR 60 +I W+EL +K+AIK +SE +FE +R +FQ+ Q ++F+ NWH YLC ++EI+ G+R Sbjct: 4 LIVWDELTHAEKMAIKAISEHSFEGFLRCFFQITQGERFKMNWHAKYLCRVIDEILEGKR 63 Query: 61 GNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSNEF 120 +TI NV PGS KTE+FSIH PVY+M+K KKVRNL++SF+DSLVKRNSKRVR++I S EF Sbjct: 64 KDTIINVAPGSAKTELFSIHFPVYSMIKIKKVRNLSLSFSDSLVKRNSKRVRDLIKSKEF 123 Query: 121 QELWPCKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLDDID 180 QELWPC FGT +D+E+QVL+ +GKV FE IS A G++TGSRGGYMT +SG +MLDD Sbjct: 124 QELWPCSFGTCRDDEIQVLDENGKVRFESISKAMAGQVTGSRGGYMTDDYSGCIMLDDPL 183 Query: 181 KPDDMFSKVKRERTHMLLKNTIRSRRMHN----ETPIIAIQQRLHAQDSTWFMMNGGMGI 236 KPDD S V+RE +MLLKNTIRSRR + ETPIIA+QQRLH D++ FM +G MGI Sbjct: 184 KPDDALSNVRREAVNMLLKNTIRSRRASSVKGKETPIIAVQQRLHVLDTSHFMESGQMGI 243 Query: 237 EFDQISIPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLAL 296 +FD + +PA+VTE+Y TLPDW++ F DVL+S +VE DGVK+YS++P+KES+ DL+A+ Sbjct: 244 KFDVVKVPAIVTEDYADTLPDWIKQQFIDDVLSSPFVERDGVKYYSYFPAKESIEDLMAM 303 Query: 297 READQYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTG 356 R+AD YTF SQY Q+P+ALGG++ N +W+ + P KYDYRFIT DTA T Sbjct: 304 RDADPYTFLSQYAQEPVALGGNLINVDWFQRLSDTFRP----PAKYDYRFITCDTAMTTK 359 Query: 357 ELNDYTVFCLWGKKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVE 416 +D++V LWG K+ K+Y ID RGKWEAP++E + F ++ ++S G+LRKI +E Sbjct: 360 SYSDFSVLQLWGYKDAKIYLIDQRRGKWEAPELEAELLDFEKKSRSTSQSDGILRKIIIE 419 Query: 417 DKASGTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAE 476 KASG GLIQ+ + I P + DK+TR M A P IKAG VVLPE P L+ ++ E Sbjct: 420 KKASGIGLIQSAGRVMRTPIEPYVPDNDKLTRVMSALPQIKAGNVVLPESAPWLSGLLTE 479 Query: 477 HSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAG 518 +AFT DD+H HDD +D A N+ L DDP R+ R+AG Sbjct: 480 IAAFTADDSHKHDDQIDCLTMAINLVLNIADDPKARLMRIAG 521 >gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:144 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552286;genbank:gi:160700611;genbank:Ge neID:5758815 Length = 556 Score = 217 bits (553), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 127/330 (38%), Positives = 173/330 (52%), Gaps = 25/330 (7%) Query: 1 MIQWEELDATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRR 60 M+QWE L +K+AIK E + E RI+FQL+Q Q+F NWHH + E + G+ Sbjct: 4 MLQWENLTDAEKIAIKVACEESLEMFTRIFFQLLQGQKFLANWHHRFCMKLAEAVYHGKV 63 Query: 61 GNTIFNVTPGSGKTEVFSIHLPVYAMLKC----------------KKVRNLNVSFADSLV 104 I NV PGS KTE++SIH + +LK R L +S++D LV Sbjct: 64 RRGIINVAPGSTKTEIWSIHWICWCILKSISKYKEDEQGNVIHPGVSTRWLPLSYSDDLV 123 Query: 105 KRNSKRVREIISSNEFQELWPCKFG-TSKDEEMQVLNSDGKVWFELISAAAGGRITGSRG 163 N+KRV+EI+ S EFQ LWP K T+K + L + G++TG RG Sbjct: 124 TENAKRVKEILDSEEFQTLWPVKIDPTTKSSANWCYRDNNGNRHRLYGTSINGQVTGRRG 183 Query: 164 GYMTPG-FSGMVMLDDIDKPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHA 222 GYM F+G V+LDD P DM S +K + + L +RSR H++ PII +QQR+ Sbjct: 184 GYMVDNEFTGAVILDDPMPPKDMDSGLKMDNANKKLNRVVRSRLAHDDVPIIMVQQRIAK 243 Query: 223 QDSTWFMMNGGMGIEFDQISIPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYS 282 DST F+ + ++Q IPAL+ +EY TLP ++ RD G K S Sbjct: 244 GDSTDFLQSDKSPDSYEQFKIPALIDQEYVDTLPADMKEACLRD------TNFKG-KRCS 296 Query: 283 FWPSKESVHDLLALREADQYTFDSQYQQKP 312 +WP KE LLA+ AD Y F +QYQQ P Sbjct: 297 YWPDKEPTETLLAMESADNYMFSAQYQQSP 326 >gi|7243|lcl|protein:vir:103223 Length: 168 # NCBI annotation: putative phage relative terminase # Family: family:all:144 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277476;genbank:gi:71834119;genbank:GeneID :3562334 Length = 168 Score = 164 bits (414), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 108/164 (65%) Query: 355 TGELNDYTVFCLWGKKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIY 414 T +DY+VF LWG+K++++Y +D +RGKWEAP++E+ F ++ +K+ G+LRK+ Sbjct: 3 TKSYSDYSVFQLWGRKDNRLYLLDMVRGKWEAPELEQTLLDFESKHRAASKTDGILRKVI 62 Query: 415 VEDKASGTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEII 474 +E KASG GLIQ+ + I P + DK+TR M A P IKAG VVLP+ P L ++ Sbjct: 63 IEKKASGIGLIQSAGRVMRTPIEPFVPDTDKLTRVMSALPQIKAGNVVLPDSAPWLTSLL 122 Query: 475 AEHSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAG 518 E SAFT DD+HPHDDIVD A N EL DDP R+ RLAG Sbjct: 123 TEFSAFTADDSHPHDDIVDTTTMAINCELNLSDDPRARLMRLAG 166 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 155 bits (393), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 134/483 (27%), Positives = 221/483 (45%), Gaps = 65/483 (13%) Query: 30 WFQLMQAQQFQPNWHHLYLCHEVEEIIAGRRGNTIFNVTPGSGKTEVFSIHLPVYAMLKC 89 +F ++ AQ+ Q + ++++ G++ + P SGK+E+FS P + + Sbjct: 42 FFNILIAQELQKFY---------QDVVDGKQPRLMIYAPPRSGKSELFSRRFPAWVFGQN 92 Query: 90 KKVRNLNVSFADSLVKRNSKRVREIISSNEFQELWPCKFGTSKDEEMQVLNSDGKVW--- 146 +++ + S++ L R + V+ II + ++P K+ + GK Sbjct: 93 PELQIIACSYSADLASRMNLDVQRIIDDPIYHSIFPNTALNIKN----IATISGKPLRNS 148 Query: 147 --FELISAAAGGRITGSRGGYMTPGFSGMVMLDDIDKPDDMFSKVKRERTHMLLKNTIRS 204 FE++ R G GG G ++ D + + S+ R+ T+ + Sbjct: 149 EIFEIVGHLGAYRSAGVGGGITGMGADIAIIDDPVKDAKEANSQTVRDSIWDWYTTTLYT 208 Query: 205 RRMHNETPIIAIQQRLHAQDSTWFMM----NGGMGIEFDQISIPALVTEEYGKTLPDWLQ 260 R + ++ ++ R H D ++ NGG ++ + PA+ E+ Sbjct: 209 R-LSPKSGVLLGMTRWHEDDLAGRLIKEAENGGD--QWRIVKFPAIAEED---------- 255 Query: 261 PYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALREA-DQYTFDSQYQQKPIALGGSV 319 E+ + H P + + L +R+A +++ YQQ+P GG + Sbjct: 256 ---------EEFRKEGEPLH----PERFDLERLNKIRQAVGSQAWNALYQQRPSNKGGGI 302 Query: 320 FNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDYTVFCLWGKKND-KVYFID 378 W+ Y P + I ADTAQKT + NDY+VF + GK D K Y +D Sbjct: 303 IKGSWFGRYKV--------PPIIKVKAIYADTAQKTKQHNDYSVFIVAGKGADGKAYILD 354 Query: 379 GIRGKWEAPDMEKQFTAFVNQAW---RHNKSMGVLRKIYVEDKASGTGLIQNLRKKTPIS 435 IRGKWEAP++E+ + W + K G+L + VEDKASGT LIQ +R+ I Sbjct: 355 LIRGKWEAPELEQT----LKDVWAKHKAKKETGILTRANVEDKASGTSLIQTIRRNNQIP 410 Query: 436 ITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAFTYDDTHPHDDIVDNF 495 ITP+Q + DK TR + Q I++G V+LPE P +A+ I E AFT D+H HDD VD Sbjct: 411 ITPIQVDADKYTRVLGVQGYIESGYVMLPESAPWIADFINECEAFTATDSHAHDDQVDAL 470 Query: 496 MDA 498 + A Sbjct: 471 VMA 473 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 127/535 (23%), Positives = 223/535 (41%), Gaps = 69/535 (12%) Query: 1 MIQWEELDATQKLAIKKMSEANFEKMIRIWFQLMQAQQF---QPNWHHLYLCHEVEEIIA 57 M Q E D T++ A+ + E + E R + + F Q H +C +++ II Sbjct: 1 MQQALENDVTEQEAL--LEELDIELAKRSYRDYVTYSHFGDYQLFEHTELICEKLQHIID 58 Query: 58 GRRGNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISS 117 G + IF + P K+ + P Y ++K K R + S++D+L K+ ++ R+ I Sbjct: 59 GEQKYYIFEMPPRHSKSMTITETFPSYFLMKNPKKRVITTSYSDALAKQFGRKNRDKIKM 118 Query: 118 NEFQELWPCKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLD 177 Q D + NS W I GG + S G T + ++++D Sbjct: 119 AGDQLF---------DIHINPANSGVTDWS--IDQYGGGMYSTSMLGGATGRGADLLIID 167 Query: 178 D-IDKPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGI 236 D I ++ SK R++ + ++T +R +H +I I R H D ++ + Sbjct: 168 DPIKNREEAESKTIRDKIYQEWESTFFTR-LHKGHSVIVIMTRWHEDDLIGRLLKANT-L 225 Query: 237 EFDQISIPALVTEE--YGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLL 294 +++I +PA+ E G+ + L P + E+ E+ +K++V Sbjct: 226 PWERIRLPAIAEENDLLGREIGQALCPELGYN---EEWAEI----------TKKTV---- 268 Query: 295 ALREADQYTFDSQYQQKPIALGGSVFNSEWWTYYGSS--------LDADEPD-PGKYDYR 345 T+ S YQQ+P G++F +W YY S L D P +D Sbjct: 269 -----GSRTWASLYQQRPRPAEGAIFKEKWLRYYVPSEEFRKKYNLGEDVAILPRLFDKS 323 Query: 346 FITADTAQKTGELNDYTVFCLWGKKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNK 405 + D A K + +D+ +W +K +FID I + P+ +N R Sbjct: 324 AQSWDMAFKDTKKSDFVAGHVWNRKKADFFFIDRIHDRMGLPET-------LNAVRRLTI 376 Query: 406 SMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPE 465 + Y+E+KA+G ++Q L+ + + ++ K TRA P+ ++G V P Sbjct: 377 KHPLAIAKYIEEKANGPAVMQTLKGEI-TGMIGVEPEGGKETRAYAVTPLFESGNVYFP- 434 Query: 466 EHPMLA----EIIAEHSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRL 516 HP+ A ++I E AF + HDD VD A ++ ++R K L Sbjct: 435 -HPLYAPWISDVIEEMLAFPNGE---HDDDVDAMTQALVKLMIGQQSLLDRYKNL 485 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 76.6 bits (187), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 116/517 (22%), Positives = 202/517 (39%), Gaps = 76/517 (14%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVE----EIIAGRRGNTIFNVTPGSGK 73 ++ NF + L+ +++ + +C E++ +++ G+R + P GK Sbjct: 37 LARTNFAAFV----SLVHRPRYRHSAFSARVCAEIDKFIDDLLEGKRPVLMLTAPPQHGK 92 Query: 74 TEVFSIHLPVYAMLKC----KKVRNLNVSFADSLVKRNSKRVREIISSNEFQELWP---- 125 + + S L Y + VR N ++A L +RN+ + I+ ++ ++P Sbjct: 93 SSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNATDAKSIMKEPVYRAVFPHVSL 152 Query: 126 CKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMV-MLDDIDK-PD 183 F KD + AGG G G GFS V ++DD K + Sbjct: 153 IGFKGGKDTSNE------------FDVPAGGEFRGVGVGGPLTGFSIDVGIIDDATKNAE 200 Query: 184 DMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMG-IEFDQIS 242 + S V ++ + + +R + + +I I A D + G F +S Sbjct: 201 EALSAVVQDGLENWYDSVLLTR-LQQLSGVILIGTPWSANDLLARVRRKMEGQPNFTLLS 259 Query: 243 IPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALRE-ADQ 301 PAL + PD + + P S L +R + Sbjct: 260 FPALNDPDQIGYNPD--------------------LPLGALVPHLHSADKLREMRRNISE 299 Query: 302 YTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDY 361 + + + YQQ P++ G++F E YY + AD P ++ ++ D K G+ +D+ Sbjct: 300 FWWSAMYQQVPLSEFGAIFPREHLQYYHA---ADLPK--QFVRVIMSCDATFKDGQASDF 354 Query: 362 TVFCLWGKKND-KVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKAS 420 +WGK D +V+ ID R K F A + + ++Y+E+ A+ Sbjct: 355 VFVGVWGKTADERVWLIDWRREKL-------AFMATAQAIADLKRKHAAVSRVYIEEAAN 407 Query: 421 GTGLIQNLRKKTPI--SITPLQRNKDKVTRAMDAQPVIKAGRVVL--PEEHPMLAEIIAE 476 G LI L+K P+ + PL K RA V V+L P+E P + ++ E Sbjct: 408 GAALIDMLKKHFPMLEGVPPL---GSKEARAHAVAWVWSNNCVMLPHPDERPGIGPVVNE 464 Query: 477 HSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERM 513 ++F D HDD VD A + L + PI M Sbjct: 465 ITSFP-DTVTGHDDSVDGMTIA--LHQLCLRTPIAAM 498 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 75.9 bits (185), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 116/517 (22%), Positives = 201/517 (38%), Gaps = 76/517 (14%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVE----EIIAGRRGNTIFNVTPGSGK 73 ++ NF + L+ +++ + +C E++ +++ G+R + P GK Sbjct: 37 LARTNFAAFV----SLVHRPRYRHSAFSARVCAEIDKFIDDLLEGKRPVLMLTAPPQHGK 92 Query: 74 TEVFSIHLPVYAMLKC----KKVRNLNVSFADSLVKRNSKRVREIISSNEFQELWP---- 125 + + S L Y + VR N ++A L +RN+ + I+ ++ ++P Sbjct: 93 SSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNATDAKSIMKEPVYRAVFPHVSL 152 Query: 126 CKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMV-MLDDIDK-PD 183 F KD + AGG G G GFS V ++DD K + Sbjct: 153 IGFKGGKDTSNE------------FDVPAGGEFRGVGVGGPLTGFSIDVGIIDDATKNAE 200 Query: 184 DMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMG-IEFDQIS 242 + S V ++ + + +R + + +I I A D + G F +S Sbjct: 201 EALSAVVQDGLENWYDSVLLTR-LQQLSGVILIGTPWSANDLLARVRRKMEGQPNFTLLS 259 Query: 243 IPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALRE-ADQ 301 PAL + PD + + P S L +R + Sbjct: 260 FPALNDPDQIGYNPD--------------------LPLGALVPHLHSADKLREMRRNISE 299 Query: 302 YTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDY 361 + + + YQQ P++ G++F E YY + AD P ++ ++ D K G+ +D+ Sbjct: 300 FWWSAMYQQVPLSEFGAIFPREHLQYYHA---ADLPK--QFVRVIMSCDATFKDGQASDF 354 Query: 362 TVFCLWGKKND-KVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKAS 420 +WGK D +V+ ID R K F A + + ++Y+E A+ Sbjct: 355 VFVGVWGKTADERVWLIDWRREKL-------AFMATAQAIADLKRKHAAVSRVYIEKAAN 407 Query: 421 GTGLIQNLRKKTPI--SITPLQRNKDKVTRAMDAQPVIKAGRVVL--PEEHPMLAEIIAE 476 G LI L+K P+ + PL K RA V V+L P+E P + ++ E Sbjct: 408 GAALIDMLKKHFPMLEGVPPL---GSKEARAHAVAWVWSNNCVMLPHPDERPGIGPVVNE 464 Query: 477 HSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERM 513 ++F D HDD VD A + L + PI M Sbjct: 465 ITSFP-DTVTGHDDSVDGMTIA--LHQLCLRTPIAAM 498 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 114/517 (22%), Positives = 204/517 (39%), Gaps = 76/517 (14%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVE----EIIAGRRGNTIFNVTPGSGK 73 ++ NF + L+ +++ + +C E++ +++ G+R + P GK Sbjct: 37 LARTNFAAFV----SLVHRPRYKHSAFSARVCAEIDKFIDDLLDGKRPVLMLTAPPQHGK 92 Query: 74 TEVFSIHLPVYAMLKC----KKVRNLNVSFADSLVKRNSKRVREIISSNEFQELWP---- 125 + + S L Y + VR N ++A L +RNS + I+ ++ ++P Sbjct: 93 SSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNSTDAKSIMKEPVYRAVFPHVSL 152 Query: 126 CKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMV-MLDDIDK-PD 183 F +KD + +G E GG +TG FS V ++DD K + Sbjct: 153 IGFKGNKDTSNEFDVPEGG---EFRGVGVGGPLTG---------FSIDVGIIDDATKNAE 200 Query: 184 DMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMG-IEFDQIS 242 + S V ++ + + +R + + +I I A D + G F +S Sbjct: 201 EALSAVVQDGLENWYDSVLLTR-LQQLSGVILIGTPWSANDLLARVRRKMEGQPNFTLLS 259 Query: 243 IPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALRE-ADQ 301 PAL + PD + + P S L +R + Sbjct: 260 FPALNDPDQIGYNPD--------------------LPLGALVPHLHSADKLREMRRNISE 299 Query: 302 YTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDY 361 + + + YQQ P++ G++F+ + YY + P ++ ++ D K G+ +D+ Sbjct: 300 FWWSAMYQQVPLSEFGAIFSRDHLQYYRVA-----ELPKQFVRVIMSCDATFKDGQASDF 354 Query: 362 TVFCLWGKKND-KVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKAS 420 +WGK D +V+ ID R K F A + + ++Y+E+ A+ Sbjct: 355 VFVGVWGKTADERVWLIDWRREKL-------AFMATAQAIADLKRKHAAVSRVYIEEAAN 407 Query: 421 GTGLIQNLRKKTPI--SITPLQRNKDKVTRAMDAQPVIKAGRVVL--PEEHPMLAEIIAE 476 G LI L+K P+ + PL K RA V V+L P+E P + ++ E Sbjct: 408 GAALIDMLKKHFPMLEGVPPL---GSKEARAHAVAWVWSNNCVMLPHPDERPGIGPVVNE 464 Query: 477 HSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERM 513 ++F D HDD VD A + L + PI M Sbjct: 465 ITSFP-DTITGHDDSVDGMTIA--LHQLCLRTPIAAM 498 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 114/517 (22%), Positives = 203/517 (39%), Gaps = 76/517 (14%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVE----EIIAGRRGNTIFNVTPGSGK 73 ++ NF + L+ +++ + +C E++ +++ G+R + P GK Sbjct: 37 LARTNFAAFV----SLVHRPRYKHSAFSARVCAEIDKFIDDLLDGKRPVLMLTAPPQHGK 92 Query: 74 TEVFSIHLPVYAMLKC----KKVRNLNVSFADSLVKRNSKRVREIISSNEFQELWP---- 125 + + S L Y + VR N ++A L +RNS + I+ ++ ++P Sbjct: 93 SSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNSTDAKSIMKEPVYRAVFPHVSL 152 Query: 126 CKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMV-MLDDIDK-PD 183 F +KD + +G E GG +TG FS V ++DD K + Sbjct: 153 IGFKGNKDTSNEFDVPEGG---EFRGVGVGGPLTG---------FSIDVGIIDDATKNAE 200 Query: 184 DMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMG-IEFDQIS 242 + S V ++ + + +R + + +I I A D + G F +S Sbjct: 201 EALSAVVQDGLENWYDSVLLTR-LQQLSGVILIGTPWSANDLLARVRRKMEGQPNFTLLS 259 Query: 243 IPALVTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSFWPSKESVHDLLALRE-ADQ 301 PAL + PD + + P S L +R + Sbjct: 260 FPALNDPDQIGYNPD--------------------LPLGALVPHLHSADKLREMRRNISE 299 Query: 302 YTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDY 361 + + + YQQ P++ G++F + YY + P ++ ++ D K G+ +D+ Sbjct: 300 FWWSAMYQQVPLSEFGAIFPRDHLQYYRVA-----ELPKQFVRVIMSCDATFKDGQASDF 354 Query: 362 TVFCLWGKKND-KVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKAS 420 +WGK D +V+ ID R K F A + + ++Y+E+ A+ Sbjct: 355 VFVGVWGKTADERVWLIDWRREKL-------AFMATAQAIADLKRKHAAVSRVYIEEAAN 407 Query: 421 GTGLIQNLRKKTPI--SITPLQRNKDKVTRAMDAQPVIKAGRVVL--PEEHPMLAEIIAE 476 G LI L+K P+ + PL K RA V V+L P+E P + ++ E Sbjct: 408 GAALIDMLKKHFPMLEGVPPL---GSKEARAHAVAWVWSNNCVMLPHPDERPGIGPVVNE 464 Query: 477 HSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERM 513 ++F D HDD VD A + L + PI M Sbjct: 465 ITSFP-DTVTGHDDSVDGMTIA--LHQLCLRTPIAAM 498 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 111/476 (23%), Positives = 183/476 (38%), Gaps = 65/476 (13%) Query: 52 VEEIIAGRRGNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKV----RNLNVSFADSLVKRN 107 VE++IAGRR P GK+ + S LP Y + + V R S+A K N Sbjct: 46 VEDLIAGRRPILDLTAPPQFGKSSLISRCLPGYVIGRLGPVLGHCRVALSSYALPRAKAN 105 Query: 108 SKRVREIISSNEFQELWPCKFGTSKDEEMQVLNSDGKVWFELISAAAGGRITGSRGGYMT 167 + R I+ ++E++P + G+ ++ G GG +T Sbjct: 106 LRDARSIMCEPIYREIFP--------HASMLTFKGGRNTYDYFDHPYGFIKAQGVGGSLT 157 Query: 168 PGFSGMVMLDDIDKPD--DMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDS 225 GFS V L+D D D S+ ++ H T+ + R+ + I + A D Sbjct: 158 -GFSIDVGLNDDLTADAQDALSQTVQD-GHQDWYATVFTTRLQQRSGQINMGTPWSANDI 215 Query: 226 TWFMMNGGMG-IEFDQISIPAL-VTEEYGKTLPDWLQPYFERDVLASEYVELDGVKHYSF 283 + G + ++S PAL E G P L E H Sbjct: 216 MARIKKVHEGKPNYRRLSYPALNYPGEIG------YDPDLREGALVPEL-------H--- 259 Query: 284 WPSKESVHDLLALREADQYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYD 343 S+E + ++ A + + + YQQ P++ G++F YY P + Sbjct: 260 --SEEKLREIKA--SMSEAWWAAMYQQAPMSEMGAIFGKGGVRYYRQG-----ELPTAFA 310 Query: 344 YRFITADTAQKTGELNDYTVFCLWGKKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRH 403 +T D + K E +D+ +W K +D ++ +R + A FTA Sbjct: 311 QVIMTVDASFKGKETSDFCAIGVWAKTSDNRVWLLAMRREKLA------FTATAQAIVDL 364 Query: 404 NKSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVL 463 + +IY+ED A+G LI+ L + I + K +R V ++G+V+L Sbjct: 365 KAAYPQCTRIYIEDAANGPALIEMLSRHVQ-GIVGVPALGSKESRWHAVAGVWQSGQVML 423 Query: 464 PEEH------PMLAEIIAEHSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERM 513 P P++AEI+A +DD VD A + L + +PI M Sbjct: 424 PHPDDVPSIVPVVAEIVAAPDVR-------NDDAVDCM--AMALYQLCMRNPISSM 470 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 47.0 bits (110), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/316 (21%), Positives = 132/316 (41%), Gaps = 35/316 (11%) Query: 59 RRGNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSN 118 R+ N ++ P GK+ + S+ P+ A+ R + ++A L +S+ RE+IS++ Sbjct: 103 RKINLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTH 162 Query: 119 EFQELWPCKFGTSKDE-EMQVLNSDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLD 177 P +D+ +++ K+ F + AGG + G +T + ++++D Sbjct: 163 GAGITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIID 222 Query: 178 DIDKPDDMFSKVKRERTHM-LLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGI 236 D K + M + R ++ L +++ R+ + II IQ R H +D ++ G + Sbjct: 223 DPFK-NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLL 281 Query: 237 EFDQ-----ISIPALVTEEYGKTLPDWLQ-PYFERDVLASEYVELDGVKHYSFWPSKESV 290 E D+ ++IPA+ E +PD L+ PY G S + E+ Sbjct: 282 EPDERTWRHLNIPAIAEE----GIPDALKRPY--------------GTPMVSARDTDEAK 323 Query: 291 HDLLALR-EADQYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITA 349 + R + + T+ + YQ P G +F W+ D P P Y + Sbjct: 324 RNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWF-------DPRLPQPPTYPAASVVG 376 Query: 350 DTAQKTGELNDYTVFC 365 +GE ++ + C Sbjct: 377 IDPADSGEGDETGIVC 392 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 85/214 (39%), Gaps = 24/214 (11%) Query: 313 IALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDYTVFCLWGKKND 372 + L G VF EW+ S + +D+ D A DYTV L G + Sbjct: 266 VTLQGGVFKREWFEVIDSPPNGLVMSVRYWDFAATKPDGANDP----DYTVGLLLGVDKE 321 Query: 373 KVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKT 432 Y++ +R E+P K ++ R + G I E++ +G I ++ Sbjct: 322 DYYYVLDVRRFRESPGKVK------SKVLRTAEEDGREVIIAKEEEPGSSGKIVTDYLRS 375 Query: 433 PISITPLQRNK---DKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAFTYDDTHPHD 489 + + ++ DKVTRA+ ++GR+ + A + E AF + HD Sbjct: 376 LLQGYTFRADRVTGDKVTRALPVSSYAESGRIKVLRASWTRA-FLDELEAFPMEGV--HD 432 Query: 490 DIVDNFMDAANI--------ELLTIDDPIERMKR 515 D VD F A NI + + I P+ R +R Sbjct: 433 DQVDAFSGAFNILSMEMRRKKKIYISGPLRRRRR 466 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 27/180 (15%) Query: 52 VEEIIAGRRGNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRV 111 +E+++ R N + + P GK+ + ++ P+ A+ R + ++ DSL ++S Sbjct: 69 IEDVLRYPRCNLLVTMPPQEGKSTMCAVWTPIRALQLNPNRRIILATYGDSLADQHSTTA 128 Query: 112 REIISSNEFQELWPCKFGTSKDEEMQVLNSDGKVWFEL-----------ISAAAGGRITG 160 R++I ++GT + + L + K+ ++ I A GG + Sbjct: 129 RDLI----------MRYGTGVTDALTGLAVEDKLGLKINPKQAKVSSWRIDGAIGGMVAA 178 Query: 161 SRGGYMTPGFSGMVMLDDIDKPDDMF---SKVKRERTHMLLKNTIRSRRMHNETPIIAIQ 217 G +T + + ++DD K +M S RE+ + ++ S R+ E +I IQ Sbjct: 179 GLGSAITGKSADLFIIDDPFK--NMIEADSTRHREKVNEWFA-SVASTRLSPEASMILIQ 235 Score = 23.5 bits (49), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Query: 189 VKRERTHMLLKNTIRSR--RMHNE---TPIIAIQQRLHAQDSTWFMMN 231 ++ ERT + N + S R H E IIA ++ L A+D TW +N Sbjct: 472 IQVERTENFIANGLVSHNTRWHPEDLSGTIIAGEKLLDAEDRTWRHIN 519 >gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp68 # Family: family:all:543 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950546;genbank:gi:119952237;genbank:GeneI D:5075700 Length = 530 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 36/170 (21%) Query: 346 FITADTAQKTGELNDYTVFCLWG-KKNDKVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHN 404 +IT D A +++DY+V +W N +++DGI + M+K F + Sbjct: 330 YITTDFATSEKQVSDYSVISVWAYGSNGDWFWVDGIACR---QTMDKNFDDLFRLVQEYQ 386 Query: 405 KSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQRN------------------KDKV 446 +++ VE G I L+K+ L RN K+ Sbjct: 387 P-----QQVGVETTGQQGGFISLLQKEM------LNRNVFFNFASSRGGQPGIHPVTSKL 435 Query: 447 TRAMDAQPVIKAGRVVLPEE---HPMLAEIIAEHSAFTYDDTHPHDDIVD 493 +R P KAG++ P E P++ + + T + DD +D Sbjct: 436 SRFNLVVPWFKAGKMYFPAEMKDSPIMTLFMGQIRLATINGLKGKDDCID 485 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 26.9 bits (58), Expect = 0.64, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%) Query: 151 SAAAGGRITGSRGGYMTPGFSGMVMLDDIDKPDDMFSKVKRERTHML 197 S G++TGSR M +LDDI+ P + +++ RE+ L Sbjct: 134 SVGITGQLTGSRADLM--------ILDDIEVPGNSMTELMREKLLQL 172 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 26.6 bits (57), Expect = 0.72, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRRGNTIF 65 S+ EK+ +I+F+ Q+ ++Q +W+ L H + +I+ R+ F Sbjct: 129 FSDEAIEKLEQIFFE--QSFEYQLHWYRAGLEHRIRDILKSRQIGATF 174 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 26.6 bits (57), Expect = 0.72, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRRGNTIF 65 S+ EK+ +I+F+ Q+ ++Q +W+ L H + +I+ R+ F Sbjct: 129 FSDEAIEKLEQIFFE--QSFEYQLHWYRAGLEHRIRDILKSRQIGATF 174 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRRGNTIF 65 S+ EK+ +I+F+ Q+ +Q +W+ L H + +I+ R+ F Sbjct: 129 FSDEAIEKLEQIFFE--QSFDYQLHWYRAGLEHRIRDILKSRQIGATF 174 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 381 RGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQ 440 R ++ D E+Q A R+N I ++ G G+ Q +RK P ++ Sbjct: 444 RHQFRGNDFEEQAAAIEAITQRYNVGY-----IAIDTTGMGQGVYQLVRKFFPAAVALNY 498 Query: 441 RNKDKVTRAMDAQPVIKAGRV 461 + K + Q V++ GR+ Sbjct: 499 SPEVKTRLVLKGQSVVRNGRL 519 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 381 RGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQ 440 R ++ D E+Q A R+N I ++ G G+ Q +RK P ++ Sbjct: 456 RHQFRGNDFEEQAAAIEAITQRYNVGY-----IAIDTTGMGQGVYQLVRKFFPAAVALNY 510 Query: 441 RNKDKVTRAMDAQPVIKAGRV 461 + K + Q V++ GR+ Sbjct: 511 SPEVKTRLVLKGQSVVRNGRL 531 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 381 RGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQ 440 R ++ D E+Q A R+N I ++ G G+ Q +RK P ++ Sbjct: 456 RHQFRGNDFEEQAAAIEAITQRYNVGY-----IAIDTTGMGQGVYQLVRKFFPAAVALNY 510 Query: 441 RNKDKVTRAMDAQPVIKAGRV 461 + K + Q V++ GR+ Sbjct: 511 SPEVKTRLVLKGQSVVRNGRL 531 >gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: putative large terminase subunit # Family: family:all:144 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071818;genbank:gi:11863101;genbank:GeneID :1257603 Length = 467 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 24/212 (11%) Query: 313 IALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDYTVFCLWGKKND 372 +++ G VF EW+ +D D + A T DYTV L G D Sbjct: 266 VSIQGGVFRREWFEI----IDTPPHDLVMKLRYWDLAATPHDGSNDPDYTVGLLMGVDQD 321 Query: 373 KVYFIDGIRGKWEAPDMEKQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKT 432 Y++ I+ +P K + R + G I E++ +G I ++ Sbjct: 322 DYYYVLDIQRFRGSPGEVKA------RVLRTAEEDGREVIIAKEEEPGSSGKIVTDYLRS 375 Query: 433 PISITPLQRNK---DKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAFTYDDTHPHD 489 + L+ ++ DK TRA+ ++ R+ + A + E AF + HD Sbjct: 376 LLQGYTLRADRVTGDKTTRALPVSSYAESFRIKVLRASWTQA-FLDELEAFPSEGV--HD 432 Query: 490 DIVDNFMDAAN---IEL-----LTIDDPIERM 513 D VD F A N +E+ + I P+ RM Sbjct: 433 DQVDAFSGAFNTLAMEMRKKRKIYISGPLRRM 464 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 8/49 (16%) Query: 151 SAAAGGRITGSRGGYMTPGFSGMVMLDDIDKPDDMFSKVKRERTHMLLK 199 S G++TGSR + +++ DD++ P++ ++ R+R L+K Sbjct: 132 SVGITGQLTGSR--------ADILIADDVEVPNNSATQAARDRLSELVK 172 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 8/49 (16%) Query: 151 SAAAGGRITGSRGGYMTPGFSGMVMLDDIDKPDDMFSKVKRERTHMLLK 199 S G++TGSR + +++ DD++ P++ ++ R+R L+K Sbjct: 142 SVGITGQLTGSR--------ADILIADDVEVPNNSATQAARDRLGELVK 182 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 376 FIDGIRGKWEAPDMEKQFTAFVN 398 ++ IRG +APD KQ T N Sbjct: 150 LVESIRGSIDAPDFFKQITVTFN 172 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 18 MSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRRGNTIF 65 S+ K+ I+F Q+ ++Q W+ L H + +I+ R+ F Sbjct: 129 FSDEAVAKLEEIFFD--QSFEYQLQWYRAGLAHRIRDILKSRQIGATF 174 >gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690680;genbank:geneid:6329148;genbank:gi: 22855074;interpro:IPR009341;interpro:IPR011855;uniprot:O 48449;genbank:GeneID:955320 Length = 177 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 17/33 (51%) Query: 304 FDSQYQQKPIALGGSVFNSEWWTYYGSSLDADE 336 FD Q + I GSV +S TYYG DA + Sbjct: 44 FDEQTKNGRILGPGSVADSGEVTYYGKRGDAGQ 76 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 12/88 (13%) Query: 272 YVELDGVKHYSFWPSKESVHDLLALREADQYTFDSQYQQKPIALG--GSVFNSEWWTYYG 329 Y+ + + + ++E++ +AL A +Y Y +K + G G +F + Sbjct: 395 YIHVVSIGGWKGGFAEENLEKCIAL--AARYGVKVIYVEKNLGAGAVGQLFRNH------ 446 Query: 330 SSLDADEPDPGKYDYRFITADTAQKTGE 357 + + +PD GK Y I + QK+G+ Sbjct: 447 --MRSIDPDTGKLRYEGIGVEDRQKSGQ 472 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 8/15 (53%), Positives = 12/15 (80%) Query: 319 VFNSEWWTYYGSSLD 333 +FNS+W YY +S+D Sbjct: 5 LFNSDWDKYYSASVD 19 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.135 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,689 Number of Sequences: 514 Number of extensions: 12426 Number of successful extensions: 97 Number of sequences better than 100.0: 36 Number of HSP's better than 100.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 41 length of query: 524 length of database: 206,069 effective HSP length: 76 effective length of query: 448 effective length of database: 167,005 effective search space: 74818240 effective search space used: 74818240 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)