BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019544.1_cdsid_YP_007010923.1 [gene=F494_gp02] [protein=large subunit terminase] [protein_id=YP_007010923.1] [location=887..2170] (427 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 541 e-156 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 501 e-144 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 128 1e-31 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 119 6e-29 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 119 6e-29 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 118 1e-28 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 113 4e-27 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 113 5e-27 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 113 5e-27 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 112 8e-27 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 111 2e-26 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 96 7e-22 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 91 3e-20 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 86 8e-19 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 63 8e-12 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 57 4e-10 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 56 6e-10 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 48 2e-07 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 47 6e-07 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 42 2e-05 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 40 4e-05 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 39 1e-04 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 38 2e-04 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 37 3e-04 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 37 5e-04 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 36 7e-04 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 36 8e-04 gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hyp... 35 0.002 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 34 0.004 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 33 0.008 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 33 0.009 gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: Bc... 31 0.023 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 30 0.058 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 27 0.38 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 27 0.41 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 27 0.49 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 26 0.75 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 26 0.75 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 26 1.1 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 25 1.5 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 23 4.7 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 23 6.6 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 23 6.6 gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18... 23 7.9 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 541 bits (1395), Expect = e-156, Method: Compositional matrix adjust. Identities = 251/413 (60%), Positives = 318/413 (76%), Gaps = 5/413 (1%) Query: 4 LKPAPFYFQPFSKKQLKVLTWWRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTF 63 +K F F PFS+KQL+VL+WW + +++ IICDGS+RAGKT+VM+ SY++W+M F Sbjct: 1 MKITRFNFVPFSRKQLQVLSWWSNPQ-ILNQEAIICDGSVRAGKTVVMALSYILWSMTNF 59 Query: 64 NEQNFGMAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFKGKTNYFYLFGGK 123 + Q FGMAGKTIG+ RRNV+ PL+ ML+S GY V D R++N +TI+ G TN++++FGGK Sbjct: 60 SGQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYFIFGGK 119 Query: 124 DESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEY 183 DE+SQDL+QGITLAG FFDEVALMP+SFVNQATARCSV G+K+WFNCNP+GP+HWFK+ + Sbjct: 120 DEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNW 179 Query: 184 LDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQ 243 +D++ +K L +HFTM DN SL RY+RMY GVFYQRYI GLWV++EG+IYD FD+ Sbjct: 180 IDQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDK 239 Query: 244 DEHVVPTVPRPYEKYYVSCDYGTQNPTTFGLWGLYNGVWYKVKEYHYDGRKENKQKTDQE 303 D VV +P +EKYYVSCDYGT NPT F LWG +GVWY VKEY+Y GR ++QKTD+E Sbjct: 240 DTMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKTDEE 299 Query: 304 YYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVATALNK 363 Y DL +F+ DI +I+DPSAASF LRQ G KV KAKNDVLDGIR TA+N+ Sbjct: 300 YCHDLKEFLGDIRAE----MIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNE 355 Query: 364 KMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNTILF 416 I ++ C F+E +SYVWD+KAAE GEDKPVKQ+DH DA RYFV TI++ Sbjct: 356 GKIKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTIIY 408 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 501 bits (1290), Expect = e-144, Method: Compositional matrix adjust. Identities = 240/414 (57%), Positives = 308/414 (74%), Gaps = 5/414 (1%) Query: 3 KLKPAPFYFQPFSKKQLKVLTWWRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDT 62 +++ F FQPFSKKQ KVLTWW SPV + +GII DG+IR+GKT+ MS ++V+WAM + Sbjct: 5 RMQTNTFKFQPFSKKQKKVLTWWLWNSPVHESEGIIADGAIRSGKTVSMSLAFVIWAMTS 64 Query: 63 FNEQNFGMAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFKGKTNYFYLFGG 122 FN QNF M GKTIG+ RNV+ L M++SRG+ HR DN + IT +N FY+FGG Sbjct: 65 FNHQNFAMCGKTIGSFNRNVLKLLLVMIQSRGFSYVYHRTDNLIEITKGDVSNDFYIFGG 124 Query: 123 KDESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVE 182 KDESSQDLIQG+TLAG+FFDEVALMPESFVNQ T RCSV G+K WFNCNP GPYHWFKV Sbjct: 125 KDESSQDLIQGLTLAGIFFDEVALMPESFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVN 184 Query: 183 YLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFD 242 ++DK + KN+L+LHF MDDNLSLS+ +K+RY+ Y+GVFYQRYI GLW +AEGI+YDMF Sbjct: 185 WIDKAETKNMLYLHFDMDDNLSLSENIKKRYRSQYQGVFYQRYIQGLWTVAEGIVYDMFS 244 Query: 243 QDEHVVPTVPRPYE-KYYVSCDYGTQNPTTFGLWGL-YNGVWYKVKEYHYDGRKENKQKT 300 +D+HVV T+P + YVS DYGTQN T F LW G +Y +EY+Y GR EN QKT Sbjct: 245 KDKHVVSTLPEMSKLGKYVSVDYGTQNATVFLLWEKDIIGKYYLTREYYYSGRDENVQKT 304 Query: 301 DQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVATA 360 + EY +DL ++ D + +I+DPSAASFIA L+++G K+ KA+N+VL+GIR V + Sbjct: 305 NAEYADDLTAWLGDTNIDR---IIIDPSAASFIAELKKRGYKIKKARNNVLEGIRFVGSM 361 Query: 361 LNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNTI 414 L ++ I ++ C T +E+ +YVWDEKA+ GEDKP+KQ DH +DA RYF T+ Sbjct: 362 LGQEKIAVHESCVNTLKEFHAYVWDEKASANGEDKPIKQFDHAMDALRYFCYTV 415 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 128 bits (322), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/399 (27%), Positives = 187/399 (46%), Gaps = 52/399 (13%) Query: 37 IICDGSIRAGKTIVMSFSYVM----WAMDTFNEQN----FGMAGKTIGALRRNVITPLKR 88 +I G+ RAGKTI+ ++ ++M A + ++ + +AG + ++ NVI+ + Sbjct: 26 LILTGAFRAGKTIMNNYLFIMELKRIARLSIQRKDPHPQYILAGYSSNSIYTNVISAI-- 83 Query: 89 MLKSRGYRVKDHRADNYLTITFK-GKTNYFYLFGGKDESSQD-------LIQGITLAGMF 140 ++Y IT K + +++LFG S I+G+T G + Sbjct: 84 --------------ESYFGITMKTDRHGHYHLFGIDIVPSYTGSIRGVGFIRGMTSYGAY 129 Query: 141 FDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEYLDKLDEK-NLLHLHFTM 199 +E +L + RCS++GA++ + NP P HW K +Y+D D K + FT+ Sbjct: 130 VNEASLATHDVFQEILQRCSIEGARIICDTNPDIPTHWLKTDYIDNHDPKARIKSFTFTI 189 Query: 200 DDNLSLSKQVKERYQRMY-KGVFYQRYILGLWVLAEGIIYDMFDQDEHVVPT--VPRPYE 256 DDN LSK E + +G+FY R ILG WV +GI+Y F++D V+P VP + Sbjct: 190 DDNTFLSKDYVESIKAATPRGMFYDRGILGQWVTGDGIVYQDFNKDTMVIPKNRVPDGLD 249 Query: 257 KYYVSCDYGTQNPTTFGLWG-LYNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDI 315 YYV D+G ++P L G +G Y +++Y QK ++ +K +++ Sbjct: 250 -YYVGVDWGYEHPNPIILLGDDKDGNTYVLEDY--------TQK--HKFINYWVKVAQNL 298 Query: 316 EKHKFKGVI--VDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVATALNK-KMILYNDCC 372 + + +I D + + + G+ I A +VL GI VA + + K + + Sbjct: 299 QTRFGRNLIFYADSARPDNVNEFQSNGLNCINANKNVLPGIECVARKMREGKFYVVDTAS 358 Query: 373 KETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFV 411 E Y WDE ++ V+ ND +LDA RY + Sbjct: 359 SGLLDEIYQYAWDESTGLPLKENDVRHND-RLDAIRYAI 396 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 119 bits (298), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 117/446 (26%), Positives = 200/446 (44%), Gaps = 67/446 (15%) Query: 1 MKKLKPAPFYFQPFSKKQLKVLTWWRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAM 60 M KLK ++ KQ+++L K + D +I G+ R GKTI+ + ++ M Sbjct: 1 MNKLKSL------YTDKQIEIL----KQTQKQDWFMLINHGAKRTGKTILNNDLFLRELM 50 Query: 61 --------DTFNEQNFGMAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFK- 111 + + +AG T+G +++NV+ L N I F Sbjct: 51 RVRKIADEEGIETPQYILAGATLGTIQKNVLIELT----------------NKYGIEFNF 94 Query: 112 GKTNYFYLFG------GKDE-SSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGA 164 K N F LFG G + S I+G+T G + +E +L E ++ +RCS GA Sbjct: 95 DKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGA 154 Query: 165 KLWFNCNPAGPYHWFKVEYLDKLDEK-NLLHLHFTMDDNLSLSKQVKERYQRMY-KGVFY 222 ++ + NP P HW +Y++ D K +L F +DDN L+ + KE + G+FY Sbjct: 155 RILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFY 214 Query: 223 QRYILGLWVLAEGIIYDMFDQDEHVVPTVPR---PYEKYYVSCDYGTQNPTTFGLWGL-Y 278 +R I G+WV +G++Y FD +E+ + P ++Y+ D+G ++ + L G Sbjct: 215 ERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGI 274 Query: 279 NGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDI-EKHKFKGVIVDPSAASFIALLR 337 +G +Y ++E+ + + + +D + +DI ++ D + +I R Sbjct: 275 DGNFYFIEEHAHQFK----------FIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFR 324 Query: 338 QKGIKVIKAKNDVLDGIRNVATAL--NKKMILYNDCCKETFREYSSYVWDEKAAERGEDK 395 + ++ I A L G+ VA NK ++LY D +E YVW E Sbjct: 325 RHRLRAINADKSKLSGVEEVAKLFKQNKLLVLY-DNMDRFKQEVFKYVWHPTNGE----- 378 Query: 396 PVKQNDHQLDADRYFVNTILFGNKLR 421 P+K+ D LD+ RY + T +LR Sbjct: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 119 bits (298), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 117/446 (26%), Positives = 200/446 (44%), Gaps = 67/446 (15%) Query: 1 MKKLKPAPFYFQPFSKKQLKVLTWWRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAM 60 M KLK ++ KQ+++L K + D +I G+ R GKTI+ + ++ M Sbjct: 1 MNKLKSL------YTDKQIEIL----KQTQKQDWFMLINHGAKRTGKTILNNDLFLRELM 50 Query: 61 --------DTFNEQNFGMAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFK- 111 + + +AG T+G +++NV+ L N I F Sbjct: 51 RVRKIADEEGIETPQYILAGATLGTIQKNVLIELT----------------NKYGIEFNF 94 Query: 112 GKTNYFYLFG------GKDE-SSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGA 164 K N F LFG G + S I+G+T G + +E +L E ++ +RCS GA Sbjct: 95 DKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGA 154 Query: 165 KLWFNCNPAGPYHWFKVEYLDKLDEK-NLLHLHFTMDDNLSLSKQVKERYQRMY-KGVFY 222 ++ + NP P HW +Y++ D K +L F +DDN L+ + KE + G+FY Sbjct: 155 RILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFY 214 Query: 223 QRYILGLWVLAEGIIYDMFDQDEHVVPTVPR---PYEKYYVSCDYGTQNPTTFGLWGL-Y 278 +R I G+WV +G++Y FD +E+ + P ++Y+ D+G ++ + L G Sbjct: 215 ERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGI 274 Query: 279 NGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDI-EKHKFKGVIVDPSAASFIALLR 337 +G +Y ++E+ + + + +D + +DI ++ D + +I R Sbjct: 275 DGNFYFIEEHAHQFK----------FIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFR 324 Query: 338 QKGIKVIKAKNDVLDGIRNVATAL--NKKMILYNDCCKETFREYSSYVWDEKAAERGEDK 395 + ++ I A L G+ VA NK ++LY D +E YVW E Sbjct: 325 RHRLRAINADKSKLSGVEEVAKLFKQNKLLVLY-DNMDRFKQEVFKYVWHPTNGE----- 378 Query: 396 PVKQNDHQLDADRYFVNTILFGNKLR 421 P+K+ D LD+ RY + T +LR Sbjct: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 118 bits (296), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/433 (26%), Positives = 193/433 (44%), Gaps = 62/433 (14%) Query: 14 FSKKQLKVLTWWRKASPVSDKDGIICD--GSIRAGKTIVMSFSYV--------MWAMDTF 63 ++K+QL+VL + + + D IC G+ RAGKT+V + ++V + Sbjct: 7 YTKRQLEVLNY------IWNHDWFICGLHGAKRAGKTVVNNDTFVTELSRVRKIADRMAI 60 Query: 64 NEQNFGMAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFKGKTNYFYLFGGK 123 +E + +AG + A++ NV L+ + G+ K + +++ K Y G Sbjct: 61 DEPIYILAGTSSTAIQNNV---LQELYNKYGFEPKYDKHGSFVFCGVKVVQVYTGSISGL 117 Query: 124 DESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEY 183 + +G T G + +E +L E + +RCS DGA++ ++ NP P HW +Y Sbjct: 118 KRA-----RGFTAFGAYVNEASLANELVFKEIISRCSGDGARVVWDSNPDNPNHWLNRDY 172 Query: 184 LDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMY-KGVFYQRYILGLWVLAEGIIYDMFD 242 + K D K ++ F +DDN LSK+ + + KG FY R ILGLW +AEG IY +D Sbjct: 173 IGKNDGK-IIDFSFKLDDNTFLSKRYIDSIKAATPKGKFYDRDILGLWTVAEGAIYADYD 231 Query: 243 QDEHVVPTVPRPYEKYYVSCDYGTQNPTTFGLWG--------LYNGVWYKVKEYHY---D 291 HVV +P ++Y+ D+G + + + G L +GV + KE + Sbjct: 232 SKIHVVDELPE-MKRYFGGIDWGYTHYGSIVIVGEGVDNNFYLVDGVAAQFKEIDWWVEQ 290 Query: 292 GRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIKVIKAKNDVL 351 RK + +Y D + +A +G ++ A V+ Sbjct: 291 ARKLTGIYGNIPFY-------------------ADSARPEHVARFENEGFDIMNANKSVI 331 Query: 352 DGIRNVATAL-NKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYF 410 GI +A KK+ + F E Y W E + +D+P+K+ D LD+ RY Sbjct: 332 AGIELIAKLFKEKKLYVKRGFVPRFFDEIYQYRWKENST---KDEPLKEFDDVLDSVRYA 388 Query: 411 V-NTILFGNKLRA 422 + + + G+ RA Sbjct: 389 IYSDYVIGSTERA 401 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 113 bits (282), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 43/394 (10%) Query: 37 IICDGSIRAGKTIVMSFSYVMWAMDTFNEQ--NFGMAGKTIGALRRNVITPLKRMLKSRG 94 +I G+ RAGKT V ++M + T+ ++ NF + G T ++RRN++ ++ +L Sbjct: 26 LIASGAKRAGKTYVFILLFLM-HIATYKDKGLNFIIGGATQASIRRNILDDMELILG--- 81 Query: 95 YRVKDHRADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQ 154 ++ D + G N Y+F G++ + +G T AG F +E + F+ + Sbjct: 82 ---RELTLDKSNAVKIFG--NKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKE 136 Query: 155 ATARCSVDGAKLWFNCNPAGPYHWFKVEYLDKLDEK------NLLHLHFTMDDNLSLSKQ 208 +RCS GA++ + NP P H K +Y+DK ++ N+ FT+ DN L ++ Sbjct: 137 VFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEE 196 Query: 209 -VKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQDEHVVPTV---PRPYEKYYVSCDY 264 ++ G+F R I G WV AEG++Y F + H + + ++ Y D+ Sbjct: 197 YIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDW 256 Query: 265 GTQNPTTFGLWGL-YNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGV 323 G ++ + + ++G Y ++E+ + +K+ D + + K + I++H Sbjct: 257 GYEHYGSIMVVAEDFDGNKYVIEEHAH----RHKEIDD---WVAIAKGV--IKRHGDILF 307 Query: 324 IVDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVAT--ALNKKMILYNDCC--KETFREY 379 D + I R++ IK A V+ GI ++ LNK I+ KE E Sbjct: 308 YCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKE---EI 364 Query: 380 SSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNT 413 +YVW + A D+PVK ND LDA RY V T Sbjct: 365 YNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 393 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 113 bits (282), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 43/394 (10%) Query: 37 IICDGSIRAGKTIVMSFSYVMWAMDTFNEQ--NFGMAGKTIGALRRNVITPLKRMLKSRG 94 +I G+ RAGKT V ++M + T+ ++ NF + G T ++RRN++ ++ +L Sbjct: 28 LIASGAKRAGKTYVFILLFLM-HIATYKDKGLNFIIGGATQASIRRNILDDMELILG--- 83 Query: 95 YRVKDHRADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQ 154 ++ D + G N Y+F G++ + +G T AG F +E + F+ + Sbjct: 84 ---RELTLDKSNAVKIFG--NKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKE 138 Query: 155 ATARCSVDGAKLWFNCNPAGPYHWFKVEYLDKLDEK------NLLHLHFTMDDNLSLSKQ 208 +RCS GA++ + NP P H K +Y+DK ++ N+ FT+ DN L ++ Sbjct: 139 VFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEE 198 Query: 209 -VKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQDEHVVPTV---PRPYEKYYVSCDY 264 ++ G+F R I G WV AEG++Y F + H + + ++ Y D+ Sbjct: 199 YIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDW 258 Query: 265 GTQNPTTFGLWGL-YNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGV 323 G ++ + + ++G Y ++E+ + +K+ D + + K + I++H Sbjct: 259 GYEHYGSIMVVAEDFDGNKYVIEEHAH----RHKEIDD---WVAIAKGV--IKRHGDILF 309 Query: 324 IVDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVAT--ALNKKMILYNDCC--KETFREY 379 D + I R++ IK A V+ GI ++ LNK I+ KE E Sbjct: 310 YCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKE---EI 366 Query: 380 SSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNT 413 +YVW + A D+PVK ND LDA RY V T Sbjct: 367 YNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 395 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 113 bits (282), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 43/394 (10%) Query: 37 IICDGSIRAGKTIVMSFSYVMWAMDTFNEQ--NFGMAGKTIGALRRNVITPLKRMLKSRG 94 +I G+ RAGKT V ++M + T+ ++ NF + G T ++RRN++ ++ +L Sbjct: 25 LIASGAKRAGKTYVFILLFLM-HIATYKDKGLNFIIGGATQASIRRNILDDMELILG--- 80 Query: 95 YRVKDHRADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQ 154 ++ D + G N Y+F G++ + +G T AG F +E + F+ + Sbjct: 81 ---RELTLDKSNAVKIFG--NKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKE 135 Query: 155 ATARCSVDGAKLWFNCNPAGPYHWFKVEYLDKLDEK------NLLHLHFTMDDNLSLSKQ 208 +RCS GA++ + NP P H K +Y+DK ++ N+ FT+ DN L ++ Sbjct: 136 VFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEE 195 Query: 209 -VKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQDEHVVPTV---PRPYEKYYVSCDY 264 ++ G+F R I G WV AEG++Y F + H + + ++ Y D+ Sbjct: 196 YIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVDW 255 Query: 265 GTQNPTTFGLWGL-YNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGV 323 G ++ + + ++G Y ++E+ + +K+ D + + K + I++H Sbjct: 256 GYEHYGSIMVVAEDFDGNKYVIEEHAH----RHKEIDD---WVAIAKGV--IKRHGDILF 306 Query: 324 IVDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVAT--ALNKKMILYNDCC--KETFREY 379 D + I R++ IK A V+ GI ++ LNK I+ KE E Sbjct: 307 YCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKE---EI 363 Query: 380 SSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNT 413 +YVW + A D+PVK ND LDA RY V T Sbjct: 364 YNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 392 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 112 bits (280), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 43/394 (10%) Query: 37 IICDGSIRAGKTIVMSFSYVMWAMDTFNEQ--NFGMAGKTIGALRRNVITPLKRMLKSRG 94 +I G+ RAGKT V ++M + T+ ++ NF + G T ++RRN++ ++ +L Sbjct: 25 LIASGAKRAGKTYVFILLFLM-HIATYKDKGLNFIIGGATQASIRRNILDDMELILG--- 80 Query: 95 YRVKDHRADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQ 154 ++ D + G N Y+F G++ + +G T AG F +E + F+ + Sbjct: 81 ---RELTLDKSNAVKIFG--NKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKE 135 Query: 155 ATARCSVDGAKLWFNCNPAGPYHWFKVEYLDKLDEK------NLLHLHFTMDDNLSLSKQ 208 +RCS GA++ + NP P H K +Y+DK ++ N+ FT+ DN L ++ Sbjct: 136 VFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEE 195 Query: 209 -VKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQDEHVVPTV---PRPYEKYYVSCDY 264 ++ G+F R I G WV AEG++Y F + H + + ++ Y D+ Sbjct: 196 YIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVDW 255 Query: 265 GTQNPTTFGLWGL-YNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGV 323 G ++ + + ++G Y ++E+ + +K+ D + + K + I++H Sbjct: 256 GYEHYGSIMVVAEDFDGNKYVIEEHAH----RHKEIDD---WVAIAKGV--IKRHGDILF 306 Query: 324 IVDPSAASFIALLRQKGIKVIKAKNDVLDGIRNVAT--ALNKKMILYNDCC--KETFREY 379 D + I R++ IK A V+ GI ++ LNK I+ KE E Sbjct: 307 YCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKISIIKEKVSLFKE---EI 363 Query: 380 SSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNT 413 +YVW + A D+PVK ND LDA RY V T Sbjct: 364 YNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 392 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 111 bits (277), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/428 (26%), Positives = 193/428 (45%), Gaps = 52/428 (12%) Query: 14 FSKKQLKVLTWWRKASPVSDKDGIICD--GSIRAGKTIVMSFSYVMWAMDT--------F 63 ++K+QL+VL + + + D IC G+ RA KT+V + ++V Sbjct: 7 YTKRQLEVLNY------IWNHDWFICGLHGAKRASKTVVNNDTFVTELSRVRKIADRLGV 60 Query: 64 NEQNFGMAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFKGKTNYFYLFGGK 123 +E + +AG + A++ NV L+ + G+ K + +++ K Y G Sbjct: 61 DEPIYILAGTSSTAIQNNV---LQELYNKYGFEPKYDKHGSFVFCGVKVVQVYTGSISGL 117 Query: 124 DESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEY 183 + +G T G + +E +L E + +RCS DGA++ ++ NP P HW +Y Sbjct: 118 KRA-----RGFTAFGAYVNEASLANEFVFKEIISRCSGDGARVVWDSNPDNPNHWLNRDY 172 Query: 184 LDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMY-KGVFYQRYILGLWVLAEGIIYDMFD 242 + K D K ++ F +DDN LSK+ + + + KG FY R ILG W +AEG IY +D Sbjct: 173 IGKNDGK-IIDFSFKLDDNTFLSKRYIDSIKAVTPKGKFYDRDILGHWTVAEGAIYADYD 231 Query: 243 QDEHVVPTVPRPYEKYYVSCDYGTQNPTTFGLWGLYNGVWYKVKEYHYDGRKENKQKTDQ 302 HVV +P ++Y+ D+G + + + G GV Y DG + ++ D Sbjct: 232 SKIHVVDELPE-MKRYFGGIDWGYTHYGSIVIVG--EGV--DNNFYLVDGVRAQFKEIDW 286 Query: 303 EYYEDLMKFIEDIEKHKFKGV------IVDPSAASFIALLRQKGIKVIKAKNDVLDGIRN 356 ++E + K G+ D + +A +G + A V+ GI Sbjct: 287 --------WVE--QARKLTGIYGNIPFYADSARPEHVARFENEGFDISNANKSVIAGIEL 336 Query: 357 VATAL-NKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFV-NTI 414 +A +K+ + F E Y W E + +D+P+K+ D LD+ RY + + Sbjct: 337 IAKLFKEQKLYVKRGFVPRFFDEIYQYRWKENST---KDEPLKEFDDVLDSVRYAIYSDY 393 Query: 415 LFGNKLRA 422 + G+ RA Sbjct: 394 VIGSTERA 401 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 96.3 bits (238), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 174/403 (43%), Gaps = 39/403 (9%) Query: 44 RAGKTIVMSFSYVMWAMDTFNEQNFGMAGKTIGALRRNVI---TPLKRMLKSRGYRVKDH 100 R+GKT F Y + +++ +E + A A R + T L + D Sbjct: 4 RSGKTTAGHFRYARYLIESEDENHLVTAYNQEQAYRLFIDGDGTGLMHIFDGNCEIKHDE 63 Query: 101 RADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQATARCS 160 R D+ L T KG +Y GGK +S I G++L + F E+ L+ F+ + R Sbjct: 64 RGDHLLITTPKGNKRVYYKGGGK-VNSVGAITGMSLGSVVFCEINLLHMDFIQECFRRTW 122 Query: 161 VDGAKLWF---NCNPAGPYHWFKVEYLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMY 217 AKL + + NP P H D D +N H+TMDDN L+ + K+ Sbjct: 123 --AAKLRYHLADLNPPAPQHPV---IKDVFDVQNTRWTHWTMDDNPILTAERKQNIINSL 177 Query: 218 KG--VFYQRYILGLWVLAEGIIYDMFDQDEHVVPT-VPRPYEKYYVSCDYGTQNPTTFGL 274 K Y+R +LG V+ +G+IY +FD +++V+ + P E Y+ C G Q+ T Sbjct: 178 KKNPYLYKRDVLGQRVMPQGVIYGLFDTEKNVLDALIGEPVEMYF--CADGGQSDATSMS 235 Query: 275 WGLYNGV---------WYKVKEYHYDGRKENKQKTDQEYYEDLMKFIE-DIEKH--KFKG 322 + V +V Y++ G + K Y +L FI+ ++K+ ++ Sbjct: 236 CNIVTRVRDNGRISFRLNRVAHYYHSGADTGQVKAMSTYALELKVFIDWCVKKYQMRYTE 295 Query: 323 VIVDPSAASFIALLRQKGIKVIKAKN---DVLDGIRNVATALNKKMILYND----CCKET 375 V VDP+ S L + G+ + A N DV + + + + + +D + Sbjct: 296 VFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHS 355 Query: 376 FREYSSYVWDEKAAERGED---KPVKQNDHQLDADRYFVNTIL 415 EY Y + ++ D KP+ +++H +D RY VN + Sbjct: 356 EEEYDHYHFLKEIGLYSRDDNGKPIDKDNHAMDEFRYSVNVFV 398 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 90.9 bits (224), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 36/345 (10%) Query: 99 DHRADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQATAR 158 D R D+ L T KG +Y GGK +S I G++L + F E+ L+ F+ + R Sbjct: 34 DERGDHLLITTPKGNKRVYYKGGGK-VNSVGAITGMSLGSVVFCEINLLHMDFIQECFRR 92 Query: 159 CSVDGAKLWF---NCNPAGPYHWFKVEYLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQR 215 AKL + + NP P H D D +N H+TMDDN L+ + K+ Sbjct: 93 TW--AAKLRYHLADLNPPAPQHPV---IKDVFDVQNTRWTHWTMDDNPILTAERKQNIIN 147 Query: 216 MYKG--VFYQRYILGLWVLAEGIIYDMFDQDEHVVPT-VPRPYEKYYVSCDYGTQNPTTF 272 K Y+R +LG V+ +G+IY +FD +++V+ + P E Y+ C G Q+ T Sbjct: 148 SLKKNPYLYKRDVLGQRVMPQGVIYGLFDTEKNVLDALIGEPVEMYF--CADGGQSDATS 205 Query: 273 GLWGLYNGV---------WYKVKEYHYDGRKENKQKTDQEYYEDLMKFIE-DIEKH--KF 320 + V +V Y++ G + K Y +L FI+ ++K+ ++ Sbjct: 206 MSCNIVTRVRDNGRISFRLNRVAHYYHSGADTGQVKAMSTYALELKVFIDWCVKKYQMRY 265 Query: 321 KGVIVDPSAASFIALLRQKGIKVIKAKN---DVLDGIRNVATALNKKMILYND----CCK 373 V VDP+ S L + G+ + A N DV + + + + + +D Sbjct: 266 TEVFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVN 325 Query: 374 ETFREYSSYVWDEKAAERGED---KPVKQNDHQLDADRYFVNTIL 415 + EY Y + ++ D KP+ +++H +D RY VN + Sbjct: 326 HSEEEYDHYHFLKEIGLYSRDDNGKPIDKDNHAMDEFRYSVNVFV 370 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 85.9 bits (211), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 110/446 (24%), Positives = 185/446 (41%), Gaps = 71/446 (15%) Query: 14 FSKKQLKVLTWWRKASPVSDKDGIICDGSIRAGKTIV----MSFSYVMWA-----MDTFN 64 F+ KQ + +T+ + + + +G+ R+GKT M++ Y + + FN Sbjct: 9 FTPKQQETITFPFRGVTLE-----VNEGTPRSGKTTADIFKMAYIYSISEDQNHLVAAFN 63 Query: 65 -EQNFG--MAGKTIGALRRNVITPLKRMLKSRGYRVKDHRADNYLTITFKGKTNYFYLFG 121 EQ F M G G + ++ L M D D+ L + G +Y G Sbjct: 64 QEQAFRLFMDGDGFGLM--HIFGNLAEM-------KHDEHGDHLLIHSPNGPKKIYYKGG 114 Query: 122 GKDESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWF-NCNPAGPYHWFK 180 GK +S I G++L + F E+ L+ + F+ + R + NP P H Sbjct: 115 GK-VNSVGAITGMSLGTVTFLEINLLHKDFIEECFRRTFAAKNRFHLAELNPPAPNHPVL 173 Query: 181 VEYLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYKGVFYQRYIL-----GLWVLAEG 235 + + H+T DN +LS+ ER Q +Y V + Y+L G VL +G Sbjct: 174 EIFSNYEKSGRYKWRHWTAKDNPALSE---ERKQEIYNEVKHSSYLLQRDWYGKRVLQKG 230 Query: 236 IIYDMFDQDEHVVPTVP-RPYEKYYVSCDYGTQNPTTFGLW--------GLYNGVWYKVK 286 IIY+ FD ++ +P + RP E + D G Q+ T + G Y + +V Sbjct: 231 IIYETFDMQKNQIPKLEGRPIEMVFFG-DGGQQDATVCECYVITEHAADGHYKYKFNQVA 289 Query: 287 EYHYDGRKENKQKTDQEYYEDLMKFIE----DIEKHKFKGVIVDPSAASFIALLRQKGIK 342 Y++ GR + K Y ++ +FI+ + E + V +DP+ L + G+ Sbjct: 290 SYYHSGRDTGEVKAGSTYAVEIKQFIQWCMKEYEVPVNEPVFIDPACRWLREELEKVGVD 349 Query: 343 VIKAKNDVLD----------GIRNVATALNKKMILYNDCCKETFREYS------SYVWDE 386 A N+ D GI + + L+++ L + + + YS YV DE Sbjct: 350 TAGADNNAHDVIGKAQGIEVGIERMQSLLSERRYLLVEQPNDQYDHYSWLQEIGMYVRDE 409 Query: 387 KAAERGEDKPVKQNDHQLDADRYFVN 412 + KPV +N+H +D RY N Sbjct: 410 NSG-----KPVDKNNHAMDTSRYATN 430 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 62.8 bits (151), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 33/270 (12%) Query: 156 TARCSVDGA----KLWFNCNPAGPYHWFKVEYLDK-LDEKNLLHLHFTMDDNLSLSKQVK 210 + R S+D ++ NP HW K + D+ +K++ T N L +Q Sbjct: 153 SIRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDEDTRKKDVFADTTTYRVNEWLDQQDI 212 Query: 211 ERYQRMYKGVFYQRYIL--GLWVLAEGIIYDMFD-QDEHVVPTVPRPYEKYYVSCDYG-T 266 +RY+ +++ + ++ G W +AEG++++ ++ +D +V T+ R E D+G T Sbjct: 213 DRYEDLWRTNPRRAAVVANGDWGVAEGLVFENYEVKDFDIVSTIKRIGETT-AGLDFGFT 271 Query: 267 QNPTTFGLWGL---YNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGV 323 +PTTF + +W + Y E+ TD D+ K I D + + Sbjct: 272 HDPTTFPRLAVDLEKKELWIYAEHY------EHAMTTD-----DIFKMIVDADMQN-AVI 319 Query: 324 IVDPSAASFIALLRQKGIK----VIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREY 379 D + IA L+ KGI+ IK K + GI + + I + C +T E+ Sbjct: 320 TADSAEQRLIAELQAKGIRRLVPSIKGKGSINAGI----DFMKQFKIYIHPSCIKTIEEF 375 Query: 380 SSYVWDEKAAERGEDKPVKQNDHQLDADRY 409 +Y++ + + ++P+ N+H +DA RY Sbjct: 376 DTYIYKQDKDGKWLNEPIDSNNHIIDAIRY 405 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 57.0 bits (136), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/320 (24%), Positives = 124/320 (38%), Gaps = 34/320 (10%) Query: 119 LFGGKDESSQDLIQGITLAGMFFDEVALMP---ESFVNQATARCSVDGAKLWFNCNPAGP 175 LF + D G + + FDE A+ ++F Q +K F P G Sbjct: 131 LFKLASAAQADSAVGRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGG 190 Query: 176 YHWFKVEYLDKLDEK--NLLHLHFTMDDNLSLS-KQVKERYQRMYKGVFYQRYILGLWVL 232 +WFK Y D+ N + +H T DN ++E + + K F Q Y V Sbjct: 191 -NWFKEFYAYGFDDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVF 249 Query: 233 AEGIIYDMFDQDEHV-----VPTVPRPYEKY--YVSCDYGTQNPTTFGLWGLYNGVWYKV 285 EG I+D F+ +HV + + E + + D G ++PT Sbjct: 250 -EGQIFDTFNAIDHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAV-----------LT 297 Query: 286 KEYHYDGRK----ENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIA-LLRQKG 340 +YHYD E Q+ ++ + I+++K + VD +AA F L + Sbjct: 298 IKYHYDTDTYYVLEEYQQAEKTTAQHAAYIQHCIDRYKVDRIFVDSAAAQFRQDLAYEHE 357 Query: 341 IKVIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAER--GEDKPVK 398 I AK VLDG+ + + I+ + C +Y WD + E +KP Sbjct: 358 IASAPAKKSVLDGLACLQALFQQGKIIVDASCSSLIHALQNYKWDFQEGEEKLSREKPRH 417 Query: 399 Q-NDHQLDADRYFVNTILFG 417 N H DA RY + +I G Sbjct: 418 DANSHLCDALRYGIYSISRG 437 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 140/321 (43%), Gaps = 53/321 (16%) Query: 119 LFGGKDE----SSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGA--------KL 166 LF G D+ +S + GI L +F+E A E+F +T S+ G+ ++ Sbjct: 106 LFRGLDDPLKITSITVDTGI-LCWAWFEE-AYQIETFAKFSTVVESIRGSYDSPEFFKQI 163 Query: 167 WFNCNPAGPYHWFKVEYLDKLDE-KNLLHLHFTMDDNLSLSKQVKERYQRMY-KGVFYQR 224 NP HW K + D+ + N T N L K ERY+ +Y K R Sbjct: 164 TVTFNPWSERHWLKPTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRAR 223 Query: 225 YIL-GLWVLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYG-TQNPTTF--GLWGLYNG 280 + G W +AEG+++D F ++ + ++ D+G +Q+PTT + L N Sbjct: 224 IVCDGDWGVAEGLVFDNFKVEDFDWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNK 283 Query: 281 VWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAAS--------F 332 K + YD E+Y+ M +DI++ K + D A+ Sbjct: 284 -----KLFIYD-----------EHYKKAM-LTDDIKQMLIKKGLGDVDIAADYGAGGDRV 326 Query: 333 IALLRQKGIK----VIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKA 388 I+ L+ KGIK +K N +L GI+ + ++ + C+ E+++Y +D+ Sbjct: 327 ISELKSKGIKGIRKALKGANTILPGIQFIQGF----EVIIHPSCEHAIEEFNTYTFDQDN 382 Query: 389 AERGEDKPVKQNDHQLDADRY 409 + +KP+ N+H +DA RY Sbjct: 383 DGKWLNKPIDANNHIIDALRY 403 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 48.1 bits (113), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 37/276 (13%) Query: 166 LWFNCNPAGPYHWFKVEYLDKL--DEKNLLHLHFTMDDNLS-LSKQVKERYQRMYKGVF- 221 W P PYHW E+ DK+ +E L+H +DD L ++ Q+ + +R+ Sbjct: 172 FWSYNPPRNPYHWIN-EWADKMVGEEDYLVHESSYLDDQLGFVTGQMLKDIERIKNNDHD 230 Query: 222 YQRYI-LGLWVLAEGIIYDM-----FDQDEHVVPTVPRPYEKYYVSCDYG-TQNPTTFGL 274 Y RYI LG V +Y+M DQ +P+ R +Y S D G + T G Sbjct: 231 YYRYIYLGEPVGLGTNVYNMNLFKPLDQ----LPSDDRVIALFY-SVDGGHAHSATACGF 285 Query: 275 WGLY-NGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKF-------KGVIVD 326 +GL G ++ Y+Y ++K E +DL F+ K ++ K I D Sbjct: 286 YGLTARGKVIRLNTYYYSPAGRVRKKAPSELSKDLHDFVTATAKQEYWKGARIQKRTIDD 345 Query: 327 PSAAS-----------FIALLRQKGIKVIKAKNDVL-DGIRNVATALNKKMILYNDCCKE 374 AA ++ + ++K I +I +D+L G T + + D Sbjct: 346 AEAAIRNQYYADYGQYWLPVGKKKKIDMIDYVHDLLAQGRFYYLTNPYPTGLEHCDSNDI 405 Query: 375 TFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYF 410 E+ Y +DEK + K +K++DH +D +YF Sbjct: 406 FIEEHKKYQFDEKTLNSDDPKVIKEDDHTVDEFQYF 441 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 46.6 bits (109), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 112/260 (43%), Gaps = 33/260 (12%) Query: 171 NPAGPYHWFKVEYLDKLDEKNLLH-LHFTMDDNLSLSKQVKERYQRMY-KGVFYQRY-IL 227 NP HW K E+ D ++N + T DN L+ + + M + R +L Sbjct: 179 NPWSDRHWLKHEFFDDKTKRNHSRAITTTYKDNDHLNADYVDSLKEMLVRNPNRARVAVL 238 Query: 228 GLWVLAEGIIYD-MFDQDEHV---VPTVPRPYEKYYVSCDYGTQNPTTFGLWGLYNGVWY 283 G W +AEG+++D +F+Q + + +P+ V D+G ++ T G + + Sbjct: 239 GEWGIAEGLVFDGLFEQRDFSYDEIANLPKS-----VGLDFGFKHDPTAGEFIAVDQDNR 293 Query: 284 KVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAAS---FIALLRQKG 340 V Y YD + T+Q +++ KHK G+ + +A + L +Q Sbjct: 294 IV--YIYDEFYKQHLLTNQ--------IAQELAKHKAFGLPITADSAEQRMIVELSQQHR 343 Query: 341 IKVIK----AKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKP 396 + IK K+ V+ GI+ + + + K E+++YV+D +KP Sbjct: 344 VPNIKPSGKGKDSVIQGIQ----YMQSYRFVVHPRVKGLMEEFNTYVYDMDKEGNWLNKP 399 Query: 397 VKQNDHQLDADRYFVNTILF 416 N+H +DA RY + +F Sbjct: 400 KDANNHAIDALRYALEKYMF 419 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 41.6 bits (96), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/301 (20%), Positives = 114/301 (37%), Gaps = 28/301 (9%) Query: 125 ESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEYL 184 E SQD G + ++ DE P+ Q R + G ++ P ++L Sbjct: 158 EMSQDKFMGTAIDVIWLDEEC--PKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL 215 Query: 185 DKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQD 244 L L +H + +D LS +VKE+ +Y + G+ +L G+++ + ++ Sbjct: 216 QDLKPGQFL-IHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGIPMLGSGVVFPILEEK 274 Query: 245 EHVVP-TVPRPYEKYYVSCDYGTQNPTTFGLWGLYNGVW--YKVKEYHYDGRKENKQK-- 299 P +P + + + D G +P W K K Y YD R E+ + Sbjct: 275 FVCEPFDIPDHFHR-IIGIDLGFDHPNAIACV-----AWDAEKDKYYLYDERSESGETLG 328 Query: 300 --TDQEYYEDLMKFIEDIEKHKFK--GVIVDPSAASFIALLR-QKGIKVI------KAKN 348 D Y + + + FK G S F+ LL+ + V+ Sbjct: 329 MHADAIYLKGGHQIPVVVPHDAFKHDGAT---SGRRFVDLLKDDHNLNVVYEPFSNPPGP 385 Query: 349 DVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADR 408 D G +V +N + + + F ++++ + K R + K V +ND + A R Sbjct: 386 DGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMYHRKDGKIVDRNDDMISATR 445 Query: 409 Y 409 Y Sbjct: 446 Y 446 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 40.4 bits (93), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 44/334 (13%) Query: 118 YLFGGKDESSQ-DLIQGITLAGMFFDEVALMPESFVNQATARCSVD---GAKLWFNCNPA 173 +LF G D + I+GI + + +E + + Q T R +++ NP Sbjct: 133 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPV 190 Query: 174 GPYHWFKVEYLDKLDE-KNLLHLHFTMDDNLSLSKQVKERYQRMYK--GVFYQRYILGLW 230 +W + + + +N++ + DN L + ++ + + +Y+ Y LG + Sbjct: 191 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 250 Query: 231 VLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGTQN-PTTFGLWGLYNG--VWYKVKE 287 + +++ +++ ++ + Y D+G N P+ F + N Y + E Sbjct: 251 ATLDKLVFPKYEK--RIISDKEVGHLPSYFGLDFGYVNDPSAFIHVKIDNDNKKLYVISE 308 Query: 288 YHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIKVI--- 344 Y G N ++ + I D+ K K + D + I ++ GI I Sbjct: 309 YVKKGMLNN----------EIAQVINDLGYSKEK-ITADSAEQKSIMEIKTNGIDRIVPA 357 Query: 345 -KAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGE--DKPVKQND 401 K K+ V+ GI+ V+ I+ ++ C +T E+ +Y W +K GE ++PV + Sbjct: 358 MKGKDSVMAGIQFVSQF----DIVIDERCYKTIEEFDNYTW-KKDKNTGEYYNEPVDTYN 412 Query: 402 HQLDADRYFVNTILF--------GNKLRAVPSLY 427 H +DA RY V + N LR + SL+ Sbjct: 413 HCIDALRYAVEVLTIQKKHQKKDKNALRKIKSLF 446 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 38.9 bits (89), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 94/410 (22%), Positives = 160/410 (39%), Gaps = 36/410 (8%) Query: 31 VSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTFNEQNFGMAGKTIGALRRNVITPLKRML 90 +S + II G + K+ V+S V M N K L ++V +K L Sbjct: 30 LSKHNHIIAKGGRSSMKSSVISLKLVEKKMAN-PMSNMVCLRKVANTLYKSVYQQIKWAL 88 Query: 91 KSRGYRVKDHRADNYLTITFKGKTNYFYLFGGKDES---SQDLIQGITLAGMFFDEVA-- 145 G + + + I K FY G D + S + G ++G++F+E+A Sbjct: 89 YEMGVADQFKFGKSPMEIVHKTWGTGFYFSGCDDPAKLKSMKIPVGY-VSGLWFEELAEF 147 Query: 146 -------LMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEYLD--KLDEKNLLHLH 196 ++ ++F+ + + + FN P PY W EY+D + D+ L+H Sbjct: 148 SGVTDIDVVEDTFIREDLPQGQEVTIYMSFNP-PRNPYEWVN-EYVDSKRSDDDYLIHHT 205 Query: 197 FTMDDN---LSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDM-FDQDEHVVPTVP 252 +DD LS K + +Y+ LG + +Y+M Q +P Sbjct: 206 TYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADD 265 Query: 253 RPYEKYYVSCDYGTQNPTT----FGLWGLYNGVWYKVKEYHYDGRKENKQKTDQEYYEDL 308 R + + D G Q T FGL N + + Y+Y + +K EY ++L Sbjct: 266 RLILIDF-AIDTGHQVSATTYLSFGLTAKRNVIL--LNTYYYSPANQVVKKAPSEYSKEL 322 Query: 309 MKFIEDIEKHKFKGVIVDPSAASFIALLRQK----GIKVIK-AKNDVLDGIRNVATALNK 363 F+ + + V + ++ L Q G+ + AK +D I V L + Sbjct: 323 RDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKVDMIDFVCDLLAQ 382 Query: 364 KMILYNDCCKETF--REYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFV 411 Y D + E+ Y WD K + + VK++DH DA +Y+V Sbjct: 383 GRFYYLDIPENQIFIEEHRKYQWDVKTINTDKPEVVKEDDHTCDAFQYYV 432 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 27/264 (10%) Query: 165 KLWFNCNPAGPYHWFKVEYLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQ--RMYKGVFY 222 ++ F NP HW K +Y D ++ H H T N + + R Q + Y Sbjct: 169 QMTFTFNPVSATHWIKRKYFDYKNDDIFTH-HSTYLQNRFIDEAYYRRMQMRKEQDPEGY 227 Query: 223 QRYILGLWVLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGTQNPTTFGLWGLYNGVW 282 + Y LG W G I + H PT ++ +S D+G + G +G Sbjct: 228 KVYGLGEWGETGGAILKNYVI--HEFPTESEYFDNMRLSQDFGFNHANVVLRIGFKDGEL 285 Query: 283 YKVKE---YHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQK 339 Y E + D + K + L + + E + K +A + A +K Sbjct: 286 YICNEIYAHEMDTSEIIKIANSIGLEKTLFMYCDSAEPDRIKMW----KSAGYKAKGVKK 341 Query: 340 GIKVIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGE---DKP 396 G +KA+ D L +R I + C T +E + W K ER D+P Sbjct: 342 GPGSVKAQIDYLKQLR----------IHVHPSCTNTIKEIQQWKW--KQDERTGLYLDEP 389 Query: 397 VKQNDHQLDADRYFVNTILFGNKL 420 V+ D + A RY ++ L N + Sbjct: 390 VEFMDDAMAALRYSIDNKLKNNGI 413 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 37.4 bits (85), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 13/183 (7%) Query: 230 WVLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGTQNPTTFGLWGLYNGVWYKVKEYH 289 W +AEG IY +D HVV +P ++ + D+G + + + G GV Y Sbjct: 3 WTVAEGAIYADYDSKIHVVDELPE-MKRCFGGIDWGYTHYGSIVVVG--EGV--DGNFYL 57 Query: 290 YDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIKVIKAKND 349 DG ++ D + E K F D + +A +G + A Sbjct: 58 LDGVAAQFKEIDW-WVEQARKLTGIYRNIPF---YADSARPEHVARFESEGFDISNANKS 113 Query: 350 VLDGIRNVATAL-NKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADR 408 V+ GI +A +K+ + F E Y W E + +D+P+K+ D LD+ R Sbjct: 114 VIAGIELIAKLFKEEKLYVKRGFVPRFFDEIYQYRWKENST---KDEPLKEFDDVLDSVR 170 Query: 409 YFV 411 Y + Sbjct: 171 YAI 173 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 37.0 bits (84), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 83/351 (23%), Positives = 142/351 (40%), Gaps = 47/351 (13%) Query: 106 LTITFKGKTNYFYLFGGKDESSQDLIQGIT--LAGMFFDEVALMPESFV-NQATARCS-- 160 LTI K + FY +G ++ L I + ++++E A M S V +QA Sbjct: 108 LTIQHKRTGSSFYFYGA--DNPYKLKSNIVGDVVAVWYEEAANMKSSDVFDQANPTFIRQ 165 Query: 161 ----VDGAKLWFNCNPA-GPYHWFKVEYLDKL--DEKNLLHLH--------FTMDDNLSL 205 +D K++++ NP PY W E++DK+ D+ L+ FT L L Sbjct: 166 KPEWLDQVKVFYSYNPPKNPYDWIN-EWIDKVSKDDNYLIDTSDYRCDVRGFTSKQTLDL 224 Query: 206 SKQVKERYQRMYKGVFYQRYI-LGLWVLAEGII--YDMFDQDEHVVPTVPRPYEKYYVSC 262 +Q K+ Y+ ++ I LG + ++ ++F D+++ + Y S Sbjct: 225 IEQYKKNDYEYYRWLYLGEVIGLGTSIYNPSLLKPLEVFPDDDYI--------KSLYFSQ 276 Query: 263 DYGTQNPTTFGLWGLYNGVWYKV--KEYHYDGRKENKQKTDQEYYEDLMKFIEDIEK--H 318 D G Q T L + Y+Y ++ +K E ++L F + EK H Sbjct: 277 DSGQQVSATTELCIALTAKKRVILLDTYYYSPAHQSVKKPPSELADELYAFEDSREKQWH 336 Query: 319 KFKGVIVDPSAASFIALLRQKGIKVIK--------AKNDVLDGIRNVATALNKKMILYND 370 K A S A+ + K + K ++D ++++ A + L N Sbjct: 337 KKAWKRSADEATSDYAIDHEYFKKYGRHWHHVNKIEKTAMIDHVQDL-LATGRFYYLDNK 395 Query: 371 CCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNTILFGNKLR 421 + E+ Y WD E + K +K +DH DA +YFV L +LR Sbjct: 396 ANQIFIDEHRKYQWDGDTLESDKPKVIKVDDHTCDAFQYFVLDNLRDLELR 446 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 36.2 bits (82), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 39/195 (20%) Query: 231 VLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYG-TQNPTTFGLWGLYNGVWYKVKEYH 289 + E I +DM D RPYE + D G T +P+ VW +V Sbjct: 268 AVQEHITFDMIDG--------LRPYEGF----DEGYTADPS----------VWLRV---F 302 Query: 290 YDGRKENKQKTDQEYYE-----DLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIK-- 342 YD +++ TD+ + L K I ++++ + V D + + +R G+ Sbjct: 303 YDEQRDTVYITDELVMKRYKTKALAKDILNVQEGSYNIVRGDSANPRVLDEMRDLGVNAL 362 Query: 343 -VIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSY-VWDEKAAERGEDKPVKQN 400 V K+ N V G +A N+ I+ + C T+RE+SSY + + R P K N Sbjct: 363 AVSKSPNSVPHGTNWLA---NRIKIVIDFKCPNTWREFSSYALLPDGVGNRKHGFPDKDN 419 Query: 401 DHQLDADRYFVNTIL 415 H +D RY + ++ Sbjct: 420 -HTIDTTRYALEEVI 433 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 36.2 bits (82), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 67/314 (21%), Positives = 128/314 (40%), Gaps = 38/314 (12%) Query: 117 FYLFGGKDESSQDLIQGIT-LAGMFFDEVALMPESFVNQATARCSVDGAK---LWFNCNP 172 +LF G D+ + I+ I L+ + +E + + Q T R K ++ NP Sbjct: 110 IFLFQGMDDPEK--IKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMFNP 167 Query: 173 AGPYHWFKVEYLDKLDE--KNLLHLH--------FTMDDNLSLSKQVKERYQRMYKGVFY 222 +W + D + ++ + +H F +DN+ +++K +Y Sbjct: 168 VSKLNWTYQTWFDPSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELKNT-----NPAYY 222 Query: 223 QRYILGLWVLAEGIIYDMFDQDEHVVPTVPRPYE-KYYVSCDYGTQN-PTTFGLWGL--Y 278 + Y LG + + +++ F+ + + P P+ Y DYG N P+ F L Sbjct: 223 KIYTLGEFATLDKLVFPYFET-KRLNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMR 281 Query: 279 NGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQ 338 N Y + E+ G N+ L + I+D+ K + + D + IA +++ Sbjct: 282 NKTLYVMDEFVKKGLLNNQ----------LAQVIKDMGYSK-EVITADSAEKKSIAEMKR 330 Query: 339 KGIKVIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVW-DEKAAERGEDKPV 397 GI I+ D I L + + +D C +T E +Y + +K + ++P+ Sbjct: 331 DGIYRIRPALKGPDSIIQGIQFLQQFKWVVDDRCVKTIEELQNYTYVKDKKTDEYTNRPI 390 Query: 398 KQNDHQLDADRYFV 411 +H +DA RY V Sbjct: 391 DAYNHCIDAIRYAV 404 >gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hypothetical protein ORF012 # Family: family:all:144 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294520;genbank:gi:149408241;genbank:Ge neID:5237115 Length = 515 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 14/90 (15%) Query: 225 YILGLW-VLAEGIIYDMFDQDEHVVPTVPRPY--EKYYV--SCDYGTQNPTTFGLWGLYN 279 ++ G W ++A G+ D++ D HVVP+VP +++ + S D+G+ P W N Sbjct: 276 WLHGSWDIIAGGMFDDIYRGDVHVVPSVPLSVIPKRWKIDRSFDWGSSKPFAVLWWAESN 335 Query: 280 GVWYKVKEYHYDGRKENKQKTD----QEYY 305 G + + ++GR K + D QE+Y Sbjct: 336 G-----EPFEWNGRVYGKVRGDLYLIQEWY 360 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 33.9 bits (76), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 41/237 (17%) Query: 198 TMDDNLSLSKQVKERYQRMYKGVFYQRYIL-GLWVLAEGIIYDMFDQDEHVVPTVPRPYE 256 + + N L ++ +R +KG + L G + AEG++YD F + HV Sbjct: 214 STEHNTLLPPDGLDKIRRQFKGTAREEQGLHGGFAAAEGLVYDAFTRQTHVRD------- 266 Query: 257 KYYVSCDYGTQNPTTFGLWGLYNGVWYKVKEYHYDGRKENKQK--TDQEYYEDLMKFIED 314 + D + + ++G Y+ W + D RK + + ++Y+ E Sbjct: 267 ----ADDVRDRLADDWAMYG-YDAGWNDPRVL-LDIRKTHAGQFVVWDQFYKSESHLAEL 320 Query: 315 IEKHKFKGVIVDPSAA-------------SFIALLRQKGIKVIKAKNDVLDGIRNVATAL 361 ++ VDP A + I R+ +KA+ + GI +V + L Sbjct: 321 VDPDDALPADVDPWLAGRPRGRVYAEHEPAHIEQFRKANWPAVKAEKSLDGGIDHVRSRL 380 Query: 362 -----NKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNT 413 + +L D C E +E+ SY D K DH LDA RY + T Sbjct: 381 AMDDEGRPGVLVTDRCGELIQEFLSYKEDHVGTS-------KAQDHALDALRYALFT 430 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 32.7 bits (73), Expect = 0.008, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 377 REYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFV--NTILFGNKLRAV 423 E+ Y WDEK + +K++DH D +YFV N L G ++ V Sbjct: 388 EEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFVLDNAKLLGLRVGNV 436 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 32.7 bits (73), Expect = 0.009, Method: Compositional matrix adjust. Identities = 89/411 (21%), Positives = 160/411 (38%), Gaps = 38/411 (9%) Query: 31 VSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTFNEQNFGMAGKTIGALRRNVITPLKRML 90 +S + II G + K+ V+S V M N K L ++V +K L Sbjct: 30 LSKHNHIIAKGGRSSMKSSVISLKLVEKKMAN-PMSNMVCLRKVANTLYKSVYQQIKWAL 88 Query: 91 KSRGYRVKDHRADNYLTITFKGKTNYFYLFGGKDES---SQDLIQGITLAGMFFDEVA-- 145 G + + + + I K FY G D + S + G ++ ++F+E+A Sbjct: 89 YEMGVADQFNFGKSPMEIIHKEWGTGFYFSGCDDPAKLKSMKIPVGY-VSDLWFEELAEF 147 Query: 146 -------LMPESFVNQATARCSVDGAKLWFNCNPAGPYHWFKVEYLD--KLDEKNLLHLH 196 ++ ++F+ + + + FN P PY W EY+D + D+ L+H Sbjct: 148 SGVTDIDVVEDTFIREDLPQGQEVTIYMSFNP-PRNPYEWVN-EYVDSKRSDDDYLIHHT 205 Query: 197 FTMDDN---LSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDM-FDQDEHVVPTVP 252 +DD LS K + +Y+ LG + +Y+M Q +P Sbjct: 206 TYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADD 265 Query: 253 RPYEKYYVSCDYGTQNPTT----FGLWGLYNGVWYKVKEYHYDGRKENKQKTDQEYYEDL 308 R + + D G Q T G N + + Y+Y + +K +Y ++L Sbjct: 266 RLILIDF-AIDTGHQVSATTCLALGFTAKRNVIL--LDTYYYSPANQVVKKAPSDYSKEL 322 Query: 309 MKFIEDIEKHKFKGVIVDPSAASFIALLRQK-----GIKVIK-AKNDVLDGIRNVATALN 362 +F+ + K+ + + S LR + G+ + AK +D + V L Sbjct: 323 REFMTKVVS-KYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKVDMVDFVCDLLA 381 Query: 363 KKMILYNDCCKETF--REYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFV 411 + Y D + E+ Y WD K + + +K++DH DA +Y+V Sbjct: 382 QGRFYYLDIPENQIFIEEHRKYQWDVKTVNTDKPEVIKEDDHTCDAFQYYV 432 >gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: BcepGomrgp04 # Family: family:all:144 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210224;genbank:gi:146329916;genbank:Ge neID:5123541 Length = 510 Score = 31.2 bits (69), Expect = 0.023, Method: Compositional matrix adjust. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 29/192 (15%) Query: 118 YLFGGKDESSQDLIQGITLAGMFFDEVALMPE--SFVNQATARCSVDGAKL--WFNCNPA 173 + F G +E S+ + + M + + PE ++++ +C + L + NP Sbjct: 129 FPFIGWNELSKYPTPDLYESMMSCNRSSFRPEDWPYIDEHGNQCLLPEMPLMVFSTTNPY 188 Query: 174 GPYH-WFKVEYLDKLDE----------------------KNLLHLHFTMDDNLSLSKQVK 210 GP H W K +++D K + L + +N+ L+ + Sbjct: 189 GPGHNWVKRQFIDIAPPGVVVKTTKDVFNPRTQKREPVTKTQVRLFGSYKENIYLTPEYV 248 Query: 211 ERYQRMYKGVFYQRYILGLW-VLAEGIIYDMFDQDEHVVPTVPRPYE-KYYVSCDYGTQN 268 + + + ++ G W V+A G I D++ ++ HV P P + S D+G+ + Sbjct: 249 AELESIKDPNKRKAWLHGDWNVVAGGAIDDLWREEVHVKPRFNIPASWRVDRSFDWGSTH 308 Query: 269 PTTFGLWGLYNG 280 P G W NG Sbjct: 309 PFYVGWWAEANG 320 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 30.0 bits (66), Expect = 0.058, Method: Compositional matrix adjust. Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 42/275 (15%) Query: 165 KLWFNCNPAGPYHWFKVEYLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYK--GVFY 222 +++ NP +W + K KN + T DN L +E + + +Y Sbjct: 166 QIYLMFNPVSKVNWVYKAFFVKT-PKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYY 224 Query: 223 QRYILGLWVLAEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGTQNPTTFGL-WGLYNGV 281 + Y LG + + +I+ P+ Y+K ++ D + P+ FGL +G N Sbjct: 225 KIYALGQFATLDKLIF-------------PK-YDKQILNKDKLSHLPSFFGLDYGFINDP 270 Query: 282 WYKVKEYHYDGRKENKQKTDQEYY-------EDLMKFIEDI--EKHKFKGVIVDPSAASF 332 + H NK+ E Y + + I+D+ K + +G D + Sbjct: 271 SALL---HVKIDDANKKLYILEEYVRKNLTNDKIANAIKDLGYAKEEIRG---DSAEKKS 324 Query: 333 IALLRQKGI----KVIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWD-EK 387 LR GI V K V+ GI+ + L I+ C K T E +Y W +K Sbjct: 325 NQELRNLGIPRMIDVTKGPGTVMQGIQYL---LQYDWIVDERCVK-TIEELENYTWKKDK 380 Query: 388 AAERGEDKPVKQNDHQLDADRYFVNTILFGNKLRA 422 ++PV +H +DA RY V ++ + R+ Sbjct: 381 KTNEYTNEPVDSYNHCIDAIRYAVQDRIYQSADRS 415 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 27.3 bits (59), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 348 NDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDAD 407 N V GI + + + + C+ F E+ Y DE K VK ND LDA Sbjct: 411 NSVESGISELRDLMLEGRFKVFNTCEPFFEEFRLYHRDENG------KIVKTNDDVLDAT 464 Query: 408 RY 409 RY Sbjct: 465 RY 466 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 26.9 bits (58), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 348 NDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDAD 407 N V GI + + + + C+ F E+ Y DE K VK ND LDA Sbjct: 411 NSVESGISELRDLMLEGRFKAFNTCEPFFEEFRLYHRDENG------KIVKTNDDVLDAT 464 Query: 408 RY 409 RY Sbjct: 465 RY 466 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 26.9 bits (58), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 348 NDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDAD 407 N V GI + + + + C+ F E+ Y DE K VK ND LDA Sbjct: 429 NSVESGIGELRDLMLEGRFKVFNTCEPFFEEFRLYHRDENG------KIVKTNDDVLDAT 482 Query: 408 RY 409 RY Sbjct: 483 RY 484 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 26.2 bits (56), Expect = 0.75, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 120 FGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQA 155 F GK D ++G TL + DE A++P S ++A Sbjct: 127 FRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEA 162 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 26.2 bits (56), Expect = 0.75, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 120 FGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQA 155 F GK D ++G TL + DE A++P S ++A Sbjct: 127 FRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEA 162 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 161 VDGAKLWFNCNPAGPYHWFKVEYLDKLDEKNLLH 194 +D + W+N NP+ YH + + +L E L H Sbjct: 235 IDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDH 268 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 102 ADNY-LTITFKGKTNYFYLFGGKDESSQD-LIQGITLAGMFFDEVALMPESFVNQATARC 159 ADN L + Y G D ++ D L +G+T+ M FDE+A + V+ A Sbjct: 186 ADNSELMTCIRLGNRYLTAVGRNDVNAADKLGRGLTVPNMHFDELAYINLIGVSLPVALA 245 Query: 160 SVDGAK 165 S A+ Sbjct: 246 SGSAAR 251 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 15/26 (57%) Query: 249 PTVPRPYEKYYVSCDYGTQNPTTFGL 274 P PY+K+ ++ G +NP T G+ Sbjct: 81 PFEASPYQKFILASVQGWRNPETKGM 106 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 23.1 bits (48), Expect = 6.6, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 167 WFNCNPAGPYHWFKVEYLDKLDEKNLLH 194 W+N NP+ YH + + +L E L H Sbjct: 240 WYNSNPSMGYHLNERKIEAELGEDKLDH 267 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 23.1 bits (48), Expect = 6.6, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 167 WFNCNPAGPYHWFKVEYLDKLDEKNLLH 194 W+N NP+ YH + + +L E L H Sbjct: 240 WYNSNPSMGYHLNERKIEAELGEDKLDH 267 >gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18 # Family: family:all:54 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID: 1262312 Length = 469 Score = 22.7 bits (47), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 140 FFDEVALMPESFVNQATARCSVDGAKLWFNCNPA 173 + +E + E ++ G++LWF+ NPA Sbjct: 105 WVEEAETVSEKSLDSLIPTIRKPGSELWFSFNPA 138 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.138 0.429 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,140 Number of Sequences: 514 Number of extensions: 10986 Number of successful extensions: 130 Number of sequences better than 100.0: 50 Number of HSP's better than 100.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 58 length of query: 427 length of database: 206,069 effective HSP length: 74 effective length of query: 353 effective length of database: 168,033 effective search space: 59315649 effective search space used: 59315649 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)