Query lcl|NC_019526.1_cdsid_YP_007007193.1 [gene=F403_gp497] [protein=hypothetical protein] [protein_id=YP_007007193.1] [location=18826..19626] Match_columns 266 No_of_seqs 29 out of 35 Neff 4.5 Searched_HMMs 1612 Date Thu Nov 7 19:37:24 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_38 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_38_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:106428 Length: 306 100.0 1E-114 8E-118 644.9 23.5 251 4-266 1-306 (306) 2 protein:vir:107900 Length: 311 100.0 2E-113 1E-116 638.0 22.0 249 9-266 1-311 (311) 3 protein:vir:7198 Length: 309 # 100.0 3E-113 2E-116 637.5 21.6 250 5-266 1-309 (309) 4 protein:vir:103451 Length: 309 100.0 4E-113 2E-116 636.9 21.9 250 5-266 1-309 (309) 5 protein:vir:6889 Length: 308 # 100.0 4E-113 2E-116 637.0 21.0 250 5-266 1-308 (308) 6 protein:vir:100534 Length: 314 100.0 2E-112 1E-115 633.4 21.8 249 9-266 1-314 (314) 7 protein:vir:5657 Length: 307 # 100.0 4E-112 3E-115 631.3 20.8 249 5-266 1-307 (307) 8 protein:vir:101153 Length: 307 100.0 9E-112 5E-115 629.4 21.4 249 9-266 1-307 (307) 9 protein:vir:101857 Length: 307 100.0 9E-112 5E-115 629.4 21.4 249 9-266 1-307 (307) 10 protein:vir:81013 Length: 310 100.0 2E-111 1E-114 627.4 21.9 249 5-266 1-310 (310) 11 protein:vir:6589 Length: 310 # 100.0 2E-111 1E-114 627.4 21.9 249 5-266 1-310 (310) 12 protein:vir:98189 Length: 307 100.0 6E-110 3E-113 619.5 21.7 247 9-264 1-307 (307) 13 protein:vir:104694 Length: 281 100.0 2E-104 1E-107 589.6 22.8 244 13-266 1-281 (281) 14 protein:vir:103004 Length: 268 100.0 2.7E-98 2E-101 555.5 16.4 244 5-266 1-268 (268) 15 protein:vir:106985 Length: 276 100.0 5.8E-99 4E-102 559.2 11.1 248 13-266 1-276 (276) 16 protein:vir:104585 Length: 268 100.0 6.6E-98 4E-101 553.4 13.3 242 5-266 1-268 (268) 17 protein:vir:104585 Length: 268 97.8 1.1E-07 6.9E-11 58.7 6.1 211 31-266 1-236 (268) 18 protein:vir:106985 Length: 276 97.7 1.2E-06 7.5E-10 53.0 10.6 199 36-266 1-244 (276) 19 protein:vir:103004 Length: 268 96.0 2.5E-05 1.5E-08 45.9 4.7 202 31-266 1-236 (268) No 1 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=1.3e-114 Score=644.94 Aligned_cols=251 Identities=20% Similarity=0.283 Sum_probs=225.2 Q ss_pred EeecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cc Q lcl|NC_019526. 4 YMYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SV 80 (266) Q Consensus 4 ~~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~ 80 (266) .|++ ++|.|| +|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ |. T Consensus 1 ~Ms~---~~~~s~-----~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~ 72 (306) T protein:vir:10 1 MMSN---NFVRNP-----RELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGY 72 (306) T ss_pred CCCc---cCCCCH-----HHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCe Confidence 3443 355444 999999999999999999999999999999999999999999999999999999974 56 Q ss_pred eec-CCCcceeeeeeeccccccccCCceeeehhhhh----hhhhhcc--cccCccccchhHHHHHHHHHHHHHHHHhCCc Q lcl|NC_019526. 81 YVL-PTEVEIVHKIYRYGNGYLSSGQGSATDPFSLA----FTNSYVL--QSARNAGGYDLATYDFSFQYQELVARMFGRD 153 (266) Q Consensus 81 y~l-pd~V~~VtkI~r~~~g~~~~~~G~a~~~~~l~----~~~~~~~--~~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~ 153 (266) |++ |++|++||||+|+++|++++|+|+++|+++.. +++.+.+ ..+++++|+||+||++++|||+|+++||+|+ T Consensus 73 ~d~~~~~v~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~ 152 (306) T protein:vir:10 73 IDISAYPVFAITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPL 152 (306) T ss_pred EecCCccceeeeeeeccCcceeeeccccccccchhhhhhhhcccccchhhccchhhhhhhhHHHHHHHHHHHHHHHhccc Confidence 765 78899999999999999999999999996444 4333332 2356889999999999999999999999999 Q ss_pred cceeeccccCeEEEeecccCCceEEEehhccc---------------------------------------------ccc Q lcl|NC_019526. 154 IIFQFNPVTKKLVLDRDIRGNEEVLIHVFQNL---------------------------------------------PEP 188 (266) Q Consensus 154 ~~~~fN~~t~~L~i~~~i~~~d~~lle~y~r~---------------------------------------------~~p 188 (266) |+||||+.+++|+|.+|++++|.+++|+|-+. ++| T Consensus 153 pDf~~n~~~~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~~~~~ 232 (306) T protein:vir:10 153 PDYWLDPVNGVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGRARSE 232 (306) T ss_pred cceeEcCCcceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCccccchhhhhccchhhhccccccccCCC Confidence 99999999999999999999999999976321 477 Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 189 MLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 189 ~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) ..++.+||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .+|++++|| T Consensus 233 ~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLP-GGVTvdG~~i~eeA~~E~e~LreEL~~~---~~~ppi~mg 306 (306) T protein:vir:10 233 FPDQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLP-GGVTVDGTRLVEEARQEKEVLRQELLLL---EEPLPILMG 306 (306) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHhhhc---cCCCccccC Confidence 7889999999999999999999999999999999999 9999999999999999999999999987 367779999 No 2 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=2.4e-113 Score=638.05 Aligned_cols=249 Identities=23% Similarity=0.329 Sum_probs=229.8 Q ss_pred cccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeecc------Cccee Q lcl|NC_019526. 9 MAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDS------QSVYV 82 (266) Q Consensus 9 ~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~------~~~y~ 82 (266) ||.+|.|| +|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++++ .++++ T Consensus 1 MA~~~~s~-----~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d 75 (311) T protein:vir:10 1 MASESYNP-----KQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFD 75 (311) T ss_pred CCCCCCCH-----HHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCcee Confidence 99999777 99999999999999999999999999999999999999999999999999999884 46688 Q ss_pred cCC-CcceeeeeeeccccccccCCceeeeh----hhhhhhhhhccc------ccCccccchhHHHHHHHHHHHHHHHHhC Q lcl|NC_019526. 83 LPT-EVEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVLQ------SARNAGGYDLATYDFSFQYQELVARMFG 151 (266) Q Consensus 83 lpd-~V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~~------~~~~~~~~dL~~~~~~~qy~~~l~~~~~ 151 (266) +++ +|++||+|+|+++|++.+++|+|+|+ |+++++..+++- .+.|++|++|++|+++++|+++|+++|+ T Consensus 76 ~~~~~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~ 155 (311) T protein:vir:10 76 LKGRNIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCNSFGPNAFGADLGYFTQLMQYRSMMQDLLV 155 (311) T ss_pred cCCcchhHHHHhhccccccccCCCCcccccccCchhhhhhhhhccccccccccccccccchHHHHHHHHHHHHHHHHhhc Confidence 766 59999999999999999999999998 466776655431 2359999999999999999999999999 Q ss_pred CccceeeccccCeEEEeecccCCceEEEehhcc--------------------------------------------c-c Q lcl|NC_019526. 152 RDIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQN--------------------------------------------L-P 186 (266) Q Consensus 152 ~~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~r--------------------------------------------~-~ 186 (266) |.|+||||++|++|++.+||++||.+++|||.+ . . T Consensus 156 p~~d~~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~ 235 (311) T protein:vir:10 156 PLPDYWYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGE 235 (311) T ss_pred cccccccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccccccccceeec Confidence 999999999999999999999999999998832 1 3 Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 187 EPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 187 ~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) +|..++++||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||++| .+|++++|| T Consensus 236 dp~~~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLP-GGvTlnG~~i~eeA~~E~e~LreEl~~~---~~Pp~~liG 311 (311) T protein:vir:10 236 DLGLQDGAYNNRWVKDYATALVKEVNGNILAKHQGMQLA-GGTTVDGIRLIEEARLEKERLREELDLL---DPPTPILIG 311 (311) T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc---CCCchhccC Confidence 888899999999999999999999999999999999999 9999999999999999999999999865 578889999 No 3 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=3e-113 Score=637.51 Aligned_cols=250 Identities=26% Similarity=0.383 Sum_probs=227.9 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeec--c---Cc Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFD--S---QS 79 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e--~---~~ 79 (266) |++| +|.|| +|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|++++ + .| T Consensus 1 m~~~---~p~s~-----~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~g 72 (309) T protein:vir:71 1 MSGY---NPQNP-----KELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTG 72 (309) T ss_pred CCCC---CCCCH-----HHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccc Confidence 5433 55444 9999999999999999999999999999999999999999999999999999975 2 57 Q ss_pred ceec-CCCcceeeeeeeccccccccCCceeeeh----hhhhhhhhhcc-------cccCccccchhHHHHHHHHHHHHHH Q lcl|NC_019526. 80 VYVL-PTEVEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVL-------QSARNAGGYDLATYDFSFQYQELVA 147 (266) Q Consensus 80 ~y~l-pd~V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~-------~~~~~~~~~dL~~~~~~~qy~~~l~ 147 (266) ++++ +++|++||+|+|+++|++.+++|+|+|+ |+++++..+++ ..++|++|+||+||++++||+++++ T Consensus 73 v~d~~~~~v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~q 152 (309) T protein:vir:71 73 VFDLRGSNVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQ 152 (309) T ss_pred ceecCCcchhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHH Confidence 8887 6669999999999999999999999998 46667666542 1245999999999999999999999 Q ss_pred HHhCCccceeeccccCeEEEeecccCCceEEEehhc------------------------------------------cc Q lcl|NC_019526. 148 RMFGRDIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQ------------------------------------------NL 185 (266) Q Consensus 148 ~~~~~~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~------------------------------------------r~ 185 (266) ++|+|.|+||||++++||++.+|++.+|.+++|+|. |. T Consensus 153 d~l~~~pd~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~y~~~~~~l~~~~r~ 232 (309) T protein:vir:71 153 DMLSPIPDFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVG 232 (309) T ss_pred HHhcccCCcccccccceEEEEEeeeecceEEEEEeeccccccchhhhcchhhccccccccccceehhcccchhhhcceec Confidence 999999999999999999999999999999987652 45 Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceee Q lcl|NC_019526. 186 PEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMII 265 (266) Q Consensus 186 ~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~ 265 (266) .+|.+++++||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .||++||| T Consensus 233 ~dp~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLP-GGVTlnG~~i~eeA~~E~e~LreeL~~~---~pP~d~i~ 308 (309) T protein:vir:71 233 QDPNVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLP-GGVTIDGQRLIEEARLEKEALREELYLL---DPPFGILV 308 (309) T ss_pred cCCcchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc---cCCCccee Confidence 6899999999999999999999999999999999999999 9999999999999999999999999975 39999999 Q ss_pred C Q lcl|NC_019526. 266 G 266 (266) Q Consensus 266 G 266 (266) | T Consensus 309 g 309 (309) T protein:vir:71 309 G 309 (309) T ss_pred C Confidence 9 No 4 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=3.8e-113 Score=636.93 Aligned_cols=250 Identities=26% Similarity=0.374 Sum_probs=228.6 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeecc--C---c Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDS--Q---S 79 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~--~---~ 79 (266) |++| +|.| |+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|++++. + + T Consensus 1 ms~~---~~~s-----~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~g 72 (309) T protein:vir:10 1 MSGY---NSQN-----PKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTG 72 (309) T ss_pred CCCC---CCCC-----HHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccc Confidence 4433 5544 499999999999999999999999999999999999999999999999999999753 3 7 Q ss_pred ceec-CCCcceeeeeeeccccccccCCceeeeh----hhhhhhhhhcc-------cccCccccchhHHHHHHHHHHHHHH Q lcl|NC_019526. 80 VYVL-PTEVEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVL-------QSARNAGGYDLATYDFSFQYQELVA 147 (266) Q Consensus 80 ~y~l-pd~V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~-------~~~~~~~~~dL~~~~~~~qy~~~l~ 147 (266) +|++ +++|++||+|+|+++|++.+++|+|+|+ |+++++..+++ ..++|++|+||+||++++||+++|+ T Consensus 73 v~d~~~~~v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~ 152 (309) T protein:vir:10 73 VFDLRGSNVFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQ 152 (309) T ss_pred eeeccCcchhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHH Confidence 7887 7889999999999999999999999998 46777776653 1244899999999999999999999 Q ss_pred HHhCCccceeeccccCeEEEeecccCCceEEEehhc------------------------------------------cc Q lcl|NC_019526. 148 RMFGRDIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQ------------------------------------------NL 185 (266) Q Consensus 148 ~~~~~~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~------------------------------------------r~ 185 (266) ++|+|.|+||||++++||++.+|++++|.+++|+|- |. T Consensus 153 d~l~~~pd~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~~~~~~~~l~~~~r~ 232 (309) T protein:vir:10 153 DMLSPIPDFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVG 232 (309) T ss_pred HHhcccCCceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccccccccCcccccccccccccchhhhcceec Confidence 999999999999999999999999999888887641 45 Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceee Q lcl|NC_019526. 186 PEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMII 265 (266) Q Consensus 186 ~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~ 265 (266) .+|.+++++||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .||++||| T Consensus 233 ~dp~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLP-GGVTlnG~~i~eeA~~E~e~LreeL~~l---~pP~~~i~ 308 (309) T protein:vir:10 233 QDPDVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLP-GGVTIDGQRLIEEARLEKEALREELYLL---DPPFGIFV 308 (309) T ss_pred cCCcchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHHhc---cCCccccc Confidence 6999999999999999999999999999999999999999 9999999999999999999999999875 79999999 Q ss_pred C Q lcl|NC_019526. 266 G 266 (266) Q Consensus 266 G 266 (266) | T Consensus 309 G 309 (309) T protein:vir:10 309 G 309 (309) T ss_pred C Confidence 9 No 5 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=3.7e-113 Score=636.97 Aligned_cols=250 Identities=26% Similarity=0.370 Sum_probs=228.3 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeecc----Ccc Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDS----QSV 80 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~----~~~ 80 (266) |++| +|.| |+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++++ .+. T Consensus 1 m~~~---~~~s-----~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~k~g~ 72 (308) T protein:vir:68 1 MSGY---NAQN-----PKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDDEEKYRHGV 72 (308) T ss_pred CCCC---CCCC-----HHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeChhhhhccce Confidence 4433 4544 499999999999999999999999999999999999999999999999999999854 366 Q ss_pred eecCCC-cceeeeeeeccccccccCCceeeeh----hhhhhhhhhcc-------cccCccccchhHHHHHHHHHHHHHHH Q lcl|NC_019526. 81 YVLPTE-VEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVL-------QSARNAGGYDLATYDFSFQYQELVAR 148 (266) Q Consensus 81 y~lpd~-V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~-------~~~~~~~~~dL~~~~~~~qy~~~l~~ 148 (266) |++++. |++||+|+|+++|++.+++|+|+|+ |++++++.+++ ..+.+++|++|++|++++|||++|++ T Consensus 73 f~~~d~~v~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~d 152 (308) T protein:vir:68 73 FDMRGSNVFAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQD 152 (308) T ss_pred eecCCccchhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHH Confidence 888665 9999999999999999999999998 56777777663 23569999999999999999999999 Q ss_pred HhCCccceeeccccCeEEEeecccCCceEEEehhc------------------------------------------ccc Q lcl|NC_019526. 149 MFGRDIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQ------------------------------------------NLP 186 (266) Q Consensus 149 ~~~~~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~------------------------------------------r~~ 186 (266) ||+|.|+||||++|++|+|.+|++.+|.+++|+|. +.. T Consensus 153 l~~p~~~~~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~ 232 (308) T protein:vir:68 153 MIAPLPDFWFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNTVGYGQVGPRDSWSISERYDNPDHNLVGRRVGE 232 (308) T ss_pred hcccccccccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccceeeeeecccccCccccccccchhhheeeeecc Confidence 99999999999999999999999999988887652 456 Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 187 EPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 187 ~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) +|++++++||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .||++|||| T Consensus 233 ~p~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLP-GGvTlnG~~i~eeA~~E~e~LreEl~~~---~pP~~~i~g 308 (308) T protein:vir:68 233 DPATKQGAYNNRWVKDYASALAKELNGQILAKHQGMMLP-GGVTVDGVRLIEEARLEKEALREELYLL---DPPAGILVG 308 (308) T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc---cCCCceeeC Confidence 899999999999999999999999999999999999999 9999999999999999999999999976 399999999 No 6 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=1.7e-112 Score=633.35 Aligned_cols=249 Identities=22% Similarity=0.350 Sum_probs=227.9 Q ss_pred cccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cceecCC Q lcl|NC_019526. 9 MAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVYVLPT 85 (266) Q Consensus 9 ~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y~lpd 85 (266) ||+||.|| +|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ |++++++ T Consensus 1 ma~~~~s~-----~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~g~~d~~~ 75 (314) T protein:vir:10 1 MSYTTNNP-----LELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAG 75 (314) T ss_pred CCCCCCCH-----HHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCEEeeCC Confidence 99999777 999999999999999999999999999999999999999999999999999999986 5688988 Q ss_pred C-cceeeeeeeccccccccCCceeeeh----hhhhhhhhhccc----ccCccccchhHHHHHHHHHHHHHHHHhCCccce Q lcl|NC_019526. 86 E-VEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVLQ----SARNAGGYDLATYDFSFQYQELVARMFGRDIIF 156 (266) Q Consensus 86 ~-V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~~----~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~~ 156 (266) + |++||+|+|++++++.+++|+|+|+ |+++++..+++. .+.|++|++|++|+++++||++|++||+|.|+| T Consensus 76 ~~v~avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d~ 155 (314) T protein:vir:10 76 GNVFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDF 155 (314) T ss_pred ccceehhhhhhcccccccccCccccccccCceeeeecccccccccceeccccccchhHHHHHHHHHHHHHHhhhcccccc Confidence 6 9999999999999999999999998 466666666433 245999999999999999999999999999999 Q ss_pred eeccccCeEEEeecccCCceEEEehhc---------------------------------------cccccc-------- Q lcl|NC_019526. 157 QFNPVTKKLVLDRDIRGNEEVLIHVFQ---------------------------------------NLPEPM-------- 189 (266) Q Consensus 157 ~fN~~t~~L~i~~~i~~~d~~lle~y~---------------------------------------r~~~p~-------- 189 (266) |||+.|++|+|.++|+.+|.+++|++. ++.+|. T Consensus 156 ~~n~~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~~ 235 (314) T protein:vir:10 156 FFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIYA 235 (314) T ss_pred cccCCcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcccccceeee Confidence 999999999999999999999888762 345665 Q ss_pred ------cccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcce Q lcl|NC_019526. 190 ------LFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGM 263 (266) Q Consensus 190 ------~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~ 263 (266) ..+..||++|||||||||+||+|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ + +|+++ T Consensus 236 g~~~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLP-GGVTldG~~l~eea~~E~e~Lreel~~~-~--~~pp~ 311 (314) T protein:vir:10 236 GQSNGMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLP-GGVTIDGIRLIEEARIDIDKLRQELELL-D--GPPPI 311 (314) T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccC-CceeecHHHHHHHHHHHHHHHHHHHhhc-c--CCCcc Confidence 457789999999999999999999999999999999 9999999999999999999999999986 4 55558 Q ss_pred eeC Q lcl|NC_019526. 264 IIG 266 (266) Q Consensus 264 i~G 266 (266) .|| T Consensus 312 ~mg 314 (314) T protein:vir:10 312 IMG 314 (314) T ss_pred ccC Confidence 999 No 7 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=4.1e-112 Score=631.27 Aligned_cols=249 Identities=23% Similarity=0.376 Sum_probs=224.9 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cce Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVY 81 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y 81 (266) |+.| +|. ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|+| |+| T Consensus 1 m~~~---~~~-----s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~G~~ 72 (307) T protein:vir:56 1 MQAY---NAT-----SPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQTGII 72 (307) T ss_pred CCCC---CCC-----CHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccCCeE Confidence 4433 343 45999999999999999999999999999999999999999999999999999999974 678 Q ss_pred ecCCCcceeeeeeeccccccccCCceeeehh----hhhhhhhhcccc-----cCccccchhHHHHHHHHHHHHHHHHhCC Q lcl|NC_019526. 82 VLPTEVEIVHKIYRYGNGYLSSGQGSATDPF----SLAFTNSYVLQS-----ARNAGGYDLATYDFSFQYQELVARMFGR 152 (266) Q Consensus 82 ~lpd~V~~VtkI~r~~~g~~~~~~G~a~~~~----~l~~~~~~~~~~-----~~~~~~~dL~~~~~~~qy~~~l~~~~~~ 152 (266) +++++|++||+|+|++ ++..+++|+|+||+ +++++...+++. +.+++|++|++|++++||+++++++|+| T Consensus 73 d~~~~v~avt~Iirt~-~s~~t~dg~aty~w~tdfi~~~~gv~g~~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p 151 (307) T protein:vir:56 73 DLDIPATAITKILRAE-SSFFTMDGNATYSWFSDFLQGLAGGPGAGSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSP 151 (307) T ss_pred ecCcchhhhhhhhccC-cccccCCCccccCccccceecccccccccceeeecccccchhhhhHHHHHHHHHHHHHhhccc Confidence 8999999999999998 77778999999984 455555555433 3366679999999999999999999999 Q ss_pred ccceeeccccCeEEEeecccCCceEEEehhcc--------------------------------------------cccc Q lcl|NC_019526. 153 DIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQN--------------------------------------------LPEP 188 (266) Q Consensus 153 ~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~r--------------------------------------------~~~p 188 (266) .++||||+.|+||++.++++.||.+++|||.+ ..+| T Consensus 152 ~~d~~yn~~~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp 231 (307) T protein:vir:56 152 EYDYWYNGVNKQLRINANLSAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNP 231 (307) T ss_pred ccceeecCcceeeeeeeeeccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcceeeeccccccCC Confidence 99999999999999999999999999999831 2589 Q ss_pred ccccc--cccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 189 MLFQK--QQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 189 ~~~~~--~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) +.++. +||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .+|.+++|| T Consensus 232 ~~~t~~~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLP-GGVTlnG~~i~eeA~~E~e~LreEl~~~---~~P~~~liG 307 (307) T protein:vir:56 232 NQFAEQNAYSVRWVKDMATAMTKQMNGVILKKHQGLQLP-GGITIDGKEIYDEATQEIERLREELMSL---TVPLGVFMG 307 (307) T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc---cCCchhhcC Confidence 88986 99999999999999999999999999999999 9999999999999999999999999965 678899999 No 8 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=8.8e-112 Score=629.43 Aligned_cols=249 Identities=19% Similarity=0.312 Sum_probs=226.7 Q ss_pred cccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cceecCC Q lcl|NC_019526. 9 MAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVYVLPT 85 (266) Q Consensus 9 ~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y~lpd 85 (266) ||+||.|| +|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ |+|++|+ T Consensus 1 m~~~~~s~-----~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d 75 (307) T protein:vir:10 1 MSYTCNNP-----LELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKG 75 (307) T ss_pred CCCCCCCH-----HHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCC Confidence 99999777 999999999999999999999999999999999999999999999999999999974 6688988 Q ss_pred C-cceeeeeeeccccccccCCceeeehhh----hhhhhhhccc----ccCccccchhHHHHHHHHHHHHHHHHhCCccce Q lcl|NC_019526. 86 E-VEIVHKIYRYGNGYLSSGQGSATDPFS----LAFTNSYVLQ----SARNAGGYDLATYDFSFQYQELVARMFGRDIIF 156 (266) Q Consensus 86 ~-V~~VtkI~r~~~g~~~~~~G~a~~~~~----l~~~~~~~~~----~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~~ 156 (266) . |++||+|+|++++++++|+|+++||++ ++++..++++ .+.|++|++|++|++++||+.+|++||+|.|+| T Consensus 76 ~~v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~ 155 (307) T protein:vir:10 76 GNVFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDF 155 (307) T ss_pred cchhhhhhhhhhccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccce Confidence 6 999999999999999999999999854 4444443332 245889999999999999999999999999999 Q ss_pred eeccccCeEEEeecccCCceEEEehhc--------------------------------------------ccccccccc Q lcl|NC_019526. 157 QFNPVTKKLVLDRDIRGNEEVLIHVFQ--------------------------------------------NLPEPMLFQ 192 (266) Q Consensus 157 ~fN~~t~~L~i~~~i~~~d~~lle~y~--------------------------------------------r~~~p~~~~ 192 (266) |||+.|++|+|.+||++||.++.|+|. |..+|..++ T Consensus 156 ~yn~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t 235 (307) T protein:vir:10 156 YYNSSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGML 235 (307) T ss_pred eecCCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCccccc Confidence 999999999999999999999999761 334677777 Q ss_pred --ccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 193 --KQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 193 --~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) ++||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ + +|++++|| T Consensus 236 ~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLP-GGvTldG~~i~eeA~~E~e~LreeL~~~-~--~~ppi~mg 307 (307) T protein:vir:10 236 KDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLP-GGITIDGVRLIEEARIDIDKLRNELELL-D--APPPIIMG 307 (307) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc-C--CCCccccC Confidence 689999999999999999999999999999999 9999999999999999999999999986 3 45569999 No 9 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=8.8e-112 Score=629.43 Aligned_cols=249 Identities=19% Similarity=0.312 Sum_probs=226.7 Q ss_pred cccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cceecCC Q lcl|NC_019526. 9 MAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVYVLPT 85 (266) Q Consensus 9 ~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y~lpd 85 (266) ||+||.|| +|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ |+|++|+ T Consensus 1 m~~~~~s~-----~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d 75 (307) T protein:vir:10 1 MSYTCNNP-----LELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKG 75 (307) T ss_pred CCCCCCCH-----HHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCC Confidence 99999777 999999999999999999999999999999999999999999999999999999974 6688988 Q ss_pred C-cceeeeeeeccccccccCCceeeehhh----hhhhhhhccc----ccCccccchhHHHHHHHHHHHHHHHHhCCccce Q lcl|NC_019526. 86 E-VEIVHKIYRYGNGYLSSGQGSATDPFS----LAFTNSYVLQ----SARNAGGYDLATYDFSFQYQELVARMFGRDIIF 156 (266) Q Consensus 86 ~-V~~VtkI~r~~~g~~~~~~G~a~~~~~----l~~~~~~~~~----~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~~ 156 (266) . |++||+|+|++++++++|+|+++||++ ++++..++++ .+.|++|++|++|++++||+.+|++||+|.|+| T Consensus 76 ~~v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~ 155 (307) T protein:vir:10 76 GNVFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDF 155 (307) T ss_pred cchhhhhhhhhhccccccccCcccccccccccceeecCCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccce Confidence 6 999999999999999999999999854 4444443332 245889999999999999999999999999999 Q ss_pred eeccccCeEEEeecccCCceEEEehhc--------------------------------------------ccccccccc Q lcl|NC_019526. 157 QFNPVTKKLVLDRDIRGNEEVLIHVFQ--------------------------------------------NLPEPMLFQ 192 (266) Q Consensus 157 ~fN~~t~~L~i~~~i~~~d~~lle~y~--------------------------------------------r~~~p~~~~ 192 (266) |||+.|++|+|.+||++||.++.|+|. |..+|..++ T Consensus 156 ~yn~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t 235 (307) T protein:vir:10 156 YYNSSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGML 235 (307) T ss_pred eecCCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCccccc Confidence 999999999999999999999999761 334677777 Q ss_pred --ccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 193 --KQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 193 --~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) ++||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ + +|++++|| T Consensus 236 ~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLP-GGvTldG~~i~eeA~~E~e~LreeL~~~-~--~~ppi~mg 307 (307) T protein:vir:10 236 KDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLP-GGITIDGVRLIEEARIDIDKLRNELELL-D--APPPIIMG 307 (307) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc-C--CCCccccC Confidence 689999999999999999999999999999999 9999999999999999999999999986 3 45569999 No 10 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=2.1e-111 Score=627.39 Aligned_cols=249 Identities=22% Similarity=0.347 Sum_probs=225.1 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cce Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVY 81 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y 81 (266) |+.| +|. ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ |.| T Consensus 1 m~~~---~~~-----s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~ 72 (310) T protein:vir:81 1 MSGY---VTN-----NPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVF 72 (310) T ss_pred CCCC---CCC-----CHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCee Confidence 5544 343 44999999999999999999999999999999999999999999999999999999985 668 Q ss_pred ecCCC-cceeeeeeeccccccccCCceeeeh----hhhhhhhhhcc--cc-----cCccccchhHHHHHHHHHHHHHHHH Q lcl|NC_019526. 82 VLPTE-VEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVL--QS-----ARNAGGYDLATYDFSFQYQELVARM 149 (266) Q Consensus 82 ~lpd~-V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~--~~-----~~~~~~~dL~~~~~~~qy~~~l~~~ 149 (266) ++|+. |++||+|+|+++|++.+++|+++|+ |+++++..+++ ++ +.+++|++|++|++++||++++++| T Consensus 73 d~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ 152 (310) T protein:vir:81 73 DLSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNM 152 (310) T ss_pred eeCCcceeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHH Confidence 89886 9999999999999999999999997 57777777664 22 3379999999999999999999999 Q ss_pred hCCccceeeccccCeEEEeecccCCceEEEehhcc--------------------------------------------- Q lcl|NC_019526. 150 FGRDIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQN--------------------------------------------- 184 (266) Q Consensus 150 ~~~~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~r--------------------------------------------- 184 (266) |||.|+||||++++||+|.+||++||++++|||.+ T Consensus 153 ln~lpdy~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (310) T protein:vir:81 153 LNPLPDYWYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGM 232 (310) T ss_pred hCcccccccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeec Confidence 99999999999999999999999999999999722 Q ss_pred -ccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcce Q lcl|NC_019526. 185 -LPEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGM 263 (266) Q Consensus 185 -~~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~ 263 (266) ..+|. ++.+||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .||+++ T Consensus 233 ~~~~~~-~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLP-GGVTlnG~~i~eeA~~E~e~LreEl~~~---~pP~~i 307 (310) T protein:vir:81 233 GPISEN-KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLP-GGVTVDGIRIIEEARADIEKLRQELELL---DPPFGI 307 (310) T ss_pred ccCCCc-cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHHhh---CCCCCe Confidence 23454 58899999999999999999999999999999999 9999999999999999999999999644 788888 Q ss_pred eeC Q lcl|NC_019526. 264 IIG 266 (266) Q Consensus 264 i~G 266 (266) ||= T Consensus 308 ~~~ 310 (310) T protein:vir:81 308 LMI 310 (310) T ss_pred eeC Confidence 777 No 11 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=2.1e-111 Score=627.39 Aligned_cols=249 Identities=22% Similarity=0.347 Sum_probs=225.1 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cce Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVY 81 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y 81 (266) |+.| +|. ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ |.| T Consensus 1 m~~~---~~~-----s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~ 72 (310) T protein:vir:65 1 MSGY---VTN-----NPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVF 72 (310) T ss_pred CCCC---CCC-----CHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCee Confidence 5544 343 44999999999999999999999999999999999999999999999999999999985 668 Q ss_pred ecCCC-cceeeeeeeccccccccCCceeeeh----hhhhhhhhhcc--cc-----cCccccchhHHHHHHHHHHHHHHHH Q lcl|NC_019526. 82 VLPTE-VEIVHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVL--QS-----ARNAGGYDLATYDFSFQYQELVARM 149 (266) Q Consensus 82 ~lpd~-V~~VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~--~~-----~~~~~~~dL~~~~~~~qy~~~l~~~ 149 (266) ++|+. |++||+|+|+++|++.+++|+++|+ |+++++..+++ ++ +.+++|++|++|++++||++++++| T Consensus 73 d~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ 152 (310) T protein:vir:65 73 DLSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNM 152 (310) T ss_pred eeCCcceeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHH Confidence 89886 9999999999999999999999997 57777777664 22 3379999999999999999999999 Q ss_pred hCCccceeeccccCeEEEeecccCCceEEEehhcc--------------------------------------------- Q lcl|NC_019526. 150 FGRDIIFQFNPVTKKLVLDRDIRGNEEVLIHVFQN--------------------------------------------- 184 (266) Q Consensus 150 ~~~~~~~~fN~~t~~L~i~~~i~~~d~~lle~y~r--------------------------------------------- 184 (266) |||.|+||||++++||+|.+||++||++++|||.+ T Consensus 153 ln~lpdy~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (310) T protein:vir:65 153 LNPLPDYWYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGM 232 (310) T ss_pred hCcccccccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeec Confidence 99999999999999999999999999999999722 Q ss_pred -ccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcce Q lcl|NC_019526. 185 -LPEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGM 263 (266) Q Consensus 185 -~~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~ 263 (266) ..+|. ++.+||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ .||+++ T Consensus 233 ~~~~~~-~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLP-GGVTlnG~~i~eeA~~E~e~LreEl~~~---~pP~~i 307 (310) T protein:vir:65 233 GPISEN-KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLP-GGVTVDGIRIIEEARADIEKLRQELELL---DPPFGI 307 (310) T ss_pred ccCCCc-cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHHhh---CCCCCe Confidence 23454 58899999999999999999999999999999999 9999999999999999999999999644 788888 Q ss_pred eeC Q lcl|NC_019526. 264 IIG 266 (266) Q Consensus 264 i~G 266 (266) ||= T Consensus 308 ~~~ 310 (310) T protein:vir:65 308 LMI 310 (310) T ss_pred eeC Confidence 777 No 12 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=5.6e-110 Score=619.53 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=219.8 Q ss_pred cccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC--cceec-CC Q lcl|NC_019526. 9 MAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ--SVYVL-PT 85 (266) Q Consensus 9 ~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~--~~y~l-pd 85 (266) |+-| ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++|++ ++|++ |+ T Consensus 1 m~t~-------s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~~~~~~~~~ 73 (307) T protein:vir:98 1 MITN-------NPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKE 73 (307) T ss_pred CCcC-------CHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccccceecCCc Confidence 5553 46999999999999999999999999999999999999999999999999999999975 77995 77 Q ss_pred CcceeeeeeeccccccccCCceeeehhhhhhhhh----hcc------cccCccccchhHHHHHHHHHHHHHHHHhCCccc Q lcl|NC_019526. 86 EVEIVHKIYRYGNGYLSSGQGSATDPFSLAFTNS----YVL------QSARNAGGYDLATYDFSFQYQELVARMFGRDII 155 (266) Q Consensus 86 ~V~~VtkI~r~~~g~~~~~~G~a~~~~~l~~~~~----~~~------~~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~ 155 (266) .|++||+|+|+++|++.+++|+||||++.+++.. .++ ..++|++|++|++|++++||+++++++|+|.|+ T Consensus 74 ~v~aVT~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~d 153 (307) T protein:vir:98 74 HIFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPD 153 (307) T ss_pred hHhHHHHHhhcCccceecccccccccccCcceeecCCcccccccccceecCccccchHHHHHHHHHHHHHHHHhhccccc Confidence 7999999999999999999999999965444332 211 123589999999999999999999999999999 Q ss_pred eeeccccCeEEEeecccCCceEEEehhcc--------------------------------------------cccccc- Q lcl|NC_019526. 156 FQFNPVTKKLVLDRDIRGNEEVLIHVFQN--------------------------------------------LPEPML- 190 (266) Q Consensus 156 ~~fN~~t~~L~i~~~i~~~d~~lle~y~r--------------------------------------------~~~p~~- 190 (266) ||||++|+||++.+|+++||.+++|||.| ..+|.+ T Consensus 154 y~yn~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~ 233 (307) T protein:vir:98 154 YWYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) T ss_pred eeecCcccceeeeeccccCceEEEEEeecccccchHHhcccccceeecccccccccchhhccchhhhhhcceeecCCCCc Confidence 99999999999999999999999998821 222333 Q ss_pred --ccccccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCccee Q lcl|NC_019526. 191 --FQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMI 264 (266) Q Consensus 191 --~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i 264 (266) ++.+||++|||||||||+|++|||||+|||||||| ||||+||+|||+||++|+|+|||||+++ +..||+.|| T Consensus 234 ~~~t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLP-GGVTlnG~~i~eeA~~E~e~LreEl~~~-~~~ppi~mi 307 (307) T protein:vir:98 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLP-GGVAPDGTRLIQEAETKLQGLRDELISM-SDAVPIIMV 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhcCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc-CCCCccccC Confidence 46689999999999999999999999999999999 9999999999999999999999999886 667777777 No 13 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=1.7e-104 Score=589.55 Aligned_cols=244 Identities=18% Similarity=0.289 Sum_probs=216.8 Q ss_pred CCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC---cceecCCC-cc Q lcl|NC_019526. 13 SDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ---SVYVLPTE-VE 88 (266) Q Consensus 13 ~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~---~~y~lpd~-V~ 88 (266) =.+|+ ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|++++++ |++++|++ ++ T Consensus 1 ma~p~--s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~ 78 (281) T protein:vir:10 1 MAKPA--SRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTDGVGI 78 (281) T ss_pred CCCCC--CHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecCccee Confidence 34565 78999999999999999999999999999999999999999999999999999999974 77889887 88 Q ss_pred eeeeeeeccccccccCCceeeehhhh------------hhhhhhcccccCcc------------------ccchhHHHHH Q lcl|NC_019526. 89 IVHKIYRYGNGYLSSGQGSATDPFSL------------AFTNSYVLQSARNA------------------GGYDLATYDF 138 (266) Q Consensus 89 ~VtkI~r~~~g~~~~~~G~a~~~~~l------------~~~~~~~~~~~~~~------------------~~~dL~~~~~ 138 (266) +||+|.|++++ |+|+|++|++. +....|+..+++.. .+++|++|+| T Consensus 79 avt~i~~t~~~----~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m 154 (281) T protein:vir:10 79 VTTTATSTNIA----GYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSM 154 (281) T ss_pred EEEeeeccccc----cccccccchhhcccceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhh Confidence 99999998877 89999998753 23333443333211 1378999999 Q ss_pred HHHHHHHHHHHhCCccceeeccccCeEEEee---cccCCceEEEehhccccccccccccccchHHHHHHHHHHHHHHHHH Q lcl|NC_019526. 139 SFQYQELVARMFGRDIIFQFNPVTKKLVLDR---DIRGNEEVLIHVFQNLPEPMLFQKQQSYPWLRDWALSEAMIMLGRN 215 (266) Q Consensus 139 ~~qy~~~l~~~~~~~~~~~fN~~t~~L~i~~---~i~~~d~~lle~y~r~~~p~~~~~~~n~~WvKdYAtALvK~~wGqn 215 (266) ++||+++++++||+.+.|+||.++++|+++- +...+++++++|| |..+|+.++++||++|||||||||+|++|||| T Consensus 155 ~~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y-~~~dP~~~~~~YNnrWvKdYaTAL~K~~wGq~ 233 (281) T protein:vir:10 155 VKSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNFLVLDCY-RALDPTSFTQVYNDPFLKLYLTALMKRQWGQN 233 (281) T ss_pred hhhhhhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCceEEeee-eccCCcccccccchhHHHHHHHHHHHHHHHHH Confidence 9999999999999999999999999999986 5777999999999 67799999999999999999999999999999 Q ss_pred HHhhccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 216 RNKFATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 216 L~Kfqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) |+|||||||| ||||+||+|||+||++|+|+|||||+++ + .+|..++|| T Consensus 234 L~K~qG~qLP-GGvTvnG~~i~eeA~~E~e~L~eel~~~-~-~~pP~dmiG 281 (281) T protein:vir:10 234 LIKFRGVKLP-GGIELNGREIFDDAERDIESLRSRMASE-Y-ELPPYDFVG 281 (281) T ss_pred HHHhCCccCC-CceeecHHHHHHHHHHHHHHHHHHHhhc-c-CCCcccccC Confidence 9999999999 9999999999999999999999999875 4 455567788 No 14 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=2.7e-98 Score=555.48 Aligned_cols=244 Identities=22% Similarity=0.351 Sum_probs=209.3 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC------ Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ------ 78 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~------ 78 (266) |+.+ +|. ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|++++++ T Consensus 1 Ms~~---~~~-----s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g~~ 72 (268) T protein:vir:10 1 MSAT---RPA-----SKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAAQS 72 (268) T ss_pred CCCC---CCC-----CHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhhhh Confidence 4432 444 44999999999999999999999999999999999999999999999999999998853 Q ss_pred ------------ccee-cCCCcceeeeeeeccccccccCCceeeehhhhhhhhhhcccccCccccchhHHHHHHHHHHHH Q lcl|NC_019526. 79 ------------SVYV-LPTEVEIVHKIYRYGNGYLSSGQGSATDPFSLAFTNSYVLQSARNAGGYDLATYDFSFQYQEL 145 (266) Q Consensus 79 ------------~~y~-lpd~V~~VtkI~r~~~g~~~~~~G~a~~~~~l~~~~~~~~~~~~~~~~~dL~~~~~~~qy~~~ 145 (266) .+|+ +||+|++|++|| ++.++.++++|++..|..-.|++..... .++.|+.|+++.+|.++ T Consensus 73 ~t~~g~~~~~~~~~fi~~pp~v~gv~~vf-~~~~~~~~~~~n~~~~~~q~~lnd~~~~-----~~g~il~y~~~~~~l~~ 146 (268) T protein:vir:10 73 TTQQGSTNWYENNNYVSLPPGVLGVNHVY-TNIGASSVVPGNIFNIKYQIFLNDIYAM-----THGQILHYFMTSQYLET 146 (268) T ss_pred cccCccccccccccceecCCceeehhhhh-hcccccccccccccccchhhhhcchhhh-----hHHhhhhhhhccceeeh Confidence 4577 899999999999 5555555666666666443333321111 13578889999999999 Q ss_pred HHHHhCC--ccceeeccccCeEEEeec---ccCCceEEEehhccccccccccccccchHHHHHHHHHHHHHHHHHHHhhc Q lcl|NC_019526. 146 VARMFGR--DIIFQFNPVTKKLVLDRD---IRGNEEVLIHVFQNLPEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFA 220 (266) Q Consensus 146 l~~~~~~--~~~~~fN~~t~~L~i~~~---i~~~d~~lle~y~r~~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfq 220 (266) ++.+++. ...+.||.++++|+++.| ..++|+++++|| +..+|+.++.+||++|||||||||+|++|||||+||| T Consensus 147 ~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~-~~~dP~~~~~~YNn~WvKdYatAL~K~~wGq~L~K~q 225 (268) T protein:vir:10 147 LDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFIMVDLT-MRQDPDEYTGMYNDAWLKDYVEALFQQQWGRNLSKYD 225 (268) T ss_pred hhhhhcccCccceEEEeeeceeEEeeccCCcccchhhhhHhh-cccCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc Confidence 9988764 566999999999999986 556899999998 7779999999999999999999999999999999999 Q ss_pred cCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 221 TLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 221 g~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) ||||| |||||||+|||+||++|+|+|||||++ .+.+|.+++|| T Consensus 226 G~qLP-GGvTlnG~~i~eeA~~E~e~L~eel~~--~~~~Pp~~liG 268 (268) T protein:vir:10 226 GIQML-GGVTLNGRQILEDASQFKKDLEENIRK--EYELPPMDLIG 268 (268) T ss_pred CccCC-CceeeCHHHHHHHHHHHHHHHHHHHHh--hcCCCcceecC Confidence 99999 999999999999999999999999986 34688899999 No 15 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=5.8e-99 Score=559.17 Aligned_cols=248 Identities=22% Similarity=0.352 Sum_probs=219.8 Q ss_pred CCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeecc--------------- Q lcl|NC_019526. 13 SDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDS--------------- 77 (266) Q Consensus 13 ~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~--------------- 77 (266) =..|+ ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|+++++ T Consensus 1 ma~p~--s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~~~~~~~~~~~ 78 (276) T protein:vir:10 1 MAKPS--SKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRFTSSDQLTTAP 78 (276) T ss_pred CCCCC--CHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhhhhhhhccccc Confidence 34565 7899999999999999999999999999999999999999999999999999998864 Q ss_pred -------Cccee-cCCCcceeeeeeeccccccccCCceeeehhhhhhhhhhcccccCccccchhHHHHHHHHHHHHHHHH Q lcl|NC_019526. 78 -------QSVYV-LPTEVEIVHKIYRYGNGYLSSGQGSATDPFSLAFTNSYVLQSARNAGGYDLATYDFSFQYQELVARM 149 (266) Q Consensus 78 -------~~~y~-lpd~V~~VtkI~r~~~g~~~~~~G~a~~~~~l~~~~~~~~~~~~~~~~~dL~~~~~~~qy~~~l~~~ 149 (266) +++|+ +||.|.+|++|+++.+.+.+.+..++.++++|+...+.....-.....+++++|.++.+|.+.++.+ T Consensus 79 s~~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~~~q~fl~d~~~~~~~ql~~~g~~~~~dy~~ve~~~~~id~~ 158 (276) T protein:vir:10 79 NNDDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGLSNQYYLMDLFSFSTGSAFSFGNFDLTNYYMIKQHFETIDMI 158 (276) T ss_pred ceeeeeccCcceecCcchhhhhhhcccCccccCCccccccHHHHHHHHhcccccceeeccceeeeeEEEEEEEeccccee Confidence 46788 9999999999998877777777778899888777765432221222348899999999999999999 Q ss_pred hCCc--cceeeccccCeEEEe---ecccCCceEEEehhccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCcC Q lcl|NC_019526. 150 FGRD--IIFQFNPVTKKLVLD---RDIRGNEEVLIHVFQNLPEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNKFATLPG 224 (266) Q Consensus 150 ~~~~--~~~~fN~~t~~L~i~---~~i~~~d~~lle~y~r~~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qL 224 (266) ++.. .-|.||.++++|+++ .++..+.+++++|| |..+|..++.+||++|||||||||+|++|||||+||||||| T Consensus 159 ~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-r~~dP~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qL 237 (276) T protein:vir:10 159 INTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCY-RYLNPDDFTQVYDDSFVKRYATALLKRQWGQNLIKYNSVQL 237 (276) T ss_pred ecCCceeEEeeeccCCccccccccccccCCHHHHhhcc-cccCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccC Confidence 9665 467899999999998 47888999999999 88899999999999999999999999999999999999999 Q ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 225 PQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 225 P~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) | ||||+||+|||+||++|+|+|||||+++ +.+|++++|| T Consensus 238 P-GGvTvnG~~i~eeA~~E~e~L~eel~~~--~~~Pp~~miG 276 (276) T protein:vir:10 238 P-GGITLNGRQIWEDGNNEVRELESRMMTD--YSLPPMDMIG 276 (276) T ss_pred C-CceeeCHHHHHHHHHHHHHHHHHHHHhh--cCCCceeecC Confidence 9 9999999999999999999999999853 4678899999 No 16 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=6.6e-98 Score=553.37 Aligned_cols=242 Identities=19% Similarity=0.322 Sum_probs=214.6 Q ss_pred eecccccCCCCCCcchhHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeec-------- Q lcl|NC_019526. 5 MYDYMAGNSDAPNFDHREKIKDTITQMLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFD-------- 76 (266) Q Consensus 5 ~~~~~~~~~~~p~~~~r~~LKdyilrrLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e-------- 76 (266) |+.+ +|. ||+|||||||||||||||||||||+||+||||||||+|+||||||.+|+|++|++|+ T Consensus 1 m~~~---~~~-----s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~rt~~~~ 72 (268) T protein:vir:10 1 MSAT---RPA-----SKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKG 72 (268) T ss_pred CCCC---CCC-----CHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhcccc Confidence 4433 444 449999999999999999999999999999999999999999999999999999976 Q ss_pred ----------cCccee-cCCCcceeeeeeec--cccccccCCceeeehhhhhhhhhhcccccCccccchhHHHHHHHHHH Q lcl|NC_019526. 77 ----------SQSVYV-LPTEVEIVHKIYRY--GNGYLSSGQGSATDPFSLAFTNSYVLQSARNAGGYDLATYDFSFQYQ 143 (266) Q Consensus 77 ----------~~~~y~-lpd~V~~VtkI~r~--~~g~~~~~~G~a~~~~~l~~~~~~~~~~~~~~~~~dL~~~~~~~qy~ 143 (266) ++++|+ +||.|++|++||.. +..+..+...+..|+++++..++++ .++|..|.+..||. T Consensus 73 ~t~~~t~~~~~~~nyi~~p~~~~Gv~~vf~~~~~~~~~~~nm~~~~~q~~lnd~~~~~--------~~~i~~~~~~~~~l 144 (268) T protein:vir:10 73 FTQEGSTPWYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMT--------HGQILHYFLTSQYL 144 (268) T ss_pred ccccccccccCCCcceecCccccchhhhhccccccccccchhhcccchhhcccccccc--------ceeEEEEEEeeeee Confidence 345677 89999999999974 4444445666788888888766443 46899999999999 Q ss_pred HHHHHHhCC--ccceeeccccCeEEEeec---ccCCceEEEehhccccccccccccccchHHHHHHHHHHHHHHHHHHHh Q lcl|NC_019526. 144 ELVARMFGR--DIIFQFNPVTKKLVLDRD---IRGNEEVLIHVFQNLPEPMLFQKQQSYPWLRDWALSEAMIMLGRNRNK 218 (266) Q Consensus 144 ~~l~~~~~~--~~~~~fN~~t~~L~i~~~---i~~~d~~lle~y~r~~~p~~~~~~~n~~WvKdYAtALvK~~wGqnL~K 218 (266) ++++.+++. ...+.||+++++|+++.+ +..+++++++|| +..+|..++.+||++|||||||||+|++|||||+| T Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~-~~~dp~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K 223 (268) T protein:vir:10 145 ETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMT-MRQDPTTFTDMFNDNWLKDYVEALFQQQWGRNLSK 223 (268) T ss_pred cchhhhhccCCCcceeeecccCceeeeeeccCcccchhhhhhhh-hccCCcccchhhhhhHHHHHHHHHHHHHHHHHHHH Confidence 999999975 567899999999999976 788999999999 77799999999999999999999999999999999 Q ss_pred hccCcCCCCceeecHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeC Q lcl|NC_019526. 219 FATLPGPQGTFSMDGQQMLADGQQLQQELKERLRKYEDGSQPLGMIIG 266 (266) Q Consensus 219 fqg~qLP~GGvTldG~~i~~EA~~e~e~L~eeL~~~~d~~~Pl~~i~G 266 (266) ||||||| ||||+||+|||+||++|+|+|||||++ .+.+|.+++|| T Consensus 224 ~qG~qLP-GGvTvnG~~i~eea~~E~e~L~eel~~--~~~~Pp~~liG 268 (268) T protein:vir:10 224 YDGIQML-GGVTLNGRQILEDASKFKEDLEKDIRD--RYEIPPLDLIG 268 (268) T ss_pred hcCccCC-CceeecHHHHHHHHHHHHHHHHHHHHh--hcCCCcccccC Confidence 9999999 999999999999999999999999974 24688899999 No 17 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=97.79 E-value=1.1e-07 Score=58.70 Aligned_cols=211 Identities=12% Similarity=0.045 Sum_probs=106.2 Q ss_pred hcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC------------c--cee-cCCC--cceeeee Q lcl|NC_019526. 31 MLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ------------S--VYV-LPTE--VEIVHKI 93 (266) Q Consensus 31 rLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~------------~--~y~-lpd~--V~~VtkI 93 (266) +-+|-. . +-. +++|.+|.. .+.--+.|.+|++| + -|+ +-.. +++||++ T Consensus 1 m~~~~~---~-s~~---eLkdyiLRr--------LGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~ 65 (268) T protein:vir:10 1 MSATRP---A-SKT---ELKDYALRR--------LGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEA 65 (268) T ss_pred CCCCCC---C-CHH---HHHHHHHHh--------cCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechH Confidence 111100 0 122 333333432 35566889998865 1 133 2222 7899999 Q ss_pred eeccccccccCCceeeehhhhhhhhhhcccccCccccchhHHHHHHHHHHHHHHHHhCCccceeecccc--CeEEEeecc Q lcl|NC_019526. 94 YRYGNGYLSSGQGSATDPFSLAFTNSYVLQSARNAGGYDLATYDFSFQYQELVARMFGRDIIFQFNPVT--KKLVLDRDI 171 (266) Q Consensus 94 ~r~~~g~~~~~~G~a~~~~~l~~~~~~~~~~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~~~fN~~t--~~L~i~~~i 171 (266) .|++.++. +++|+++|+.. ++| .....+++|. +.+|+++++|+.++++||+|.++||||+.+ ..+.|...+ T Consensus 66 ~rt~~~~~-t~~~t~~~~~~----~ny-i~~p~~~~Gv-~~vf~~~~~~~~~~~nm~~~~~q~~lnd~~~~~~~~i~~~~ 138 (268) T protein:vir:10 66 IKTQAKGF-TQEGSTPWYGQ----DNY-VSTPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHYF 138 (268) T ss_pred Hhhccccc-cccccccccCC----Ccc-eecCccccch-hhhhccccccccccchhhcccchhhccccccccceeEEEEE Confidence 99998877 68888887644 223 3457788887 899999999999999999999999999954 334444443 Q ss_pred cCCceEE-Eehhcc-ccccccccccccchHHHHHHHHHH-HHHHHHHHHhhccCcCCCCcee--ecHHHHHHHHHHHHHH Q lcl|NC_019526. 172 RGNEEVL-IHVFQN-LPEPMLFQKQQSYPWLRDWALSEA-MIMLGRNRNKFATLPGPQGTFS--MDGQQMLADGQQLQQE 246 (266) Q Consensus 172 ~~~d~~l-le~y~r-~~~p~~~~~~~n~~WvKdYAtALv-K~~wGqnL~Kfqg~qLP~GGvT--ldG~~i~~EA~~e~e~ 246 (266) ...+.++ +++.-+ .++...--+...++|--+-...-+ ...|- .+.-++| .=| ...| -|-+-+-+=|....++ T Consensus 139 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~-l~~~~~~-~dp-~~~~~~YNn~WvKdYaTAL~K~ 215 (268) T protein:vir:10 139 LTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYI-MVDMTMR-QDP-TTFTDMFNDNWLKDYVEALFQQ 215 (268) T ss_pred EeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhh-hhhhhhc-cCC-cccchhhhhhHHHHHHHHHHHH Confidence 3333333 343322 122211111122221100000000 00000 1111222 223 2111 1444444445555555 Q ss_pred HHHH-HhhcccCCCCcceeeC Q lcl|NC_019526. 247 LKER-LRKYEDGSQPLGMIIG 266 (266) Q Consensus 247 L~ee-L~~~~d~~~Pl~~i~G 266 (266) .=.+ |.|.+--.-|=|+=+= T Consensus 216 ~wGq~L~K~qG~qLPGGvTvn 236 (268) T protein:vir:10 216 QWGRNLSKYDGIQMLGGVTLN 236 (268) T ss_pred HHHHHHHHhcCccCCCceeec Confidence 4433 6665444444333332 No 18 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=97.70 E-value=1.2e-06 Score=53.01 Aligned_cols=199 Identities=12% Similarity=0.058 Sum_probs=113.6 Q ss_pred eEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccC------------------c---cee---cC-CCc-ce Q lcl|NC_019526. 36 AVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQ------------------S---VYV---LP-TEV-EI 89 (266) Q Consensus 36 vi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~------------------~---~y~---lp-d~V-~~ 89 (266) --.+. +-.|+- |.+|.- .+.--+.|.+|++| | .|. +. +++ -+ T Consensus 1 ma~p~-s~~eLk---dyiLRr--------LGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~ 68 (276) T protein:vir:10 1 MAKPS-SKQELI---DYCKRQ--------LGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRF 68 (276) T ss_pred CCCCC-CHHHHH---HHHHHh--------cCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhh Confidence 11111 334443 333332 35667889998864 1 232 32 222 34 Q ss_pred eeeeeeccccccccCCceeeeh----hhhhhhhhhcccc---cCccccchhHHHHHHHHHHHHHHHHhCCccceeecccc Q lcl|NC_019526. 90 VHKIYRYGNGYLSSGQGSATDP----FSLAFTNSYVLQS---ARNAGGYDLATYDFSFQYQELVARMFGRDIIFQFNPVT 162 (266) Q Consensus 90 VtkI~r~~~g~~~~~~G~a~~~----~~l~~~~~~~~~~---~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~~~fN~~t 162 (266) ++.+.++++|+..+++|+++|+ |+++++..+++++ ++|+|++++++|. +++ ||..| T Consensus 69 ~~~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~~~q~fl--~d~---------------~~~~~ 131 (276) T protein:vir:10 69 TSSDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGLSNQYYL--MDL---------------FSFST 131 (276) T ss_pred hhhhhcccccceeeeeccCcceecCcchhhhhhhcccCccccCCccccccHHHHH--HHH---------------hcccc Confidence 7889999999999999999997 6788888877543 4588889888873 232 78889 Q ss_pred CeEEEeecccCCceEEEehhcccccccccc--------ccccchHHHHH-HHHHHHHHHHHHHHhhccCcCCC--Cceee Q lcl|NC_019526. 163 KKLVLDRDIRGNEEVLIHVFQNLPEPMLFQ--------KQQSYPWLRDW-ALSEAMIMLGRNRNKFATLPGPQ--GTFSM 231 (266) Q Consensus 163 ~~L~i~~~i~~~d~~lle~y~r~~~p~~~~--------~~~n~~WvKdY-AtALvK~~wGqnL~Kfqg~qLP~--GGvTl 231 (266) +||++.++|+.+|++++|+|-...+..... +...++|-=+- ...+-.-.| ..+..++++ =|. .|+- T Consensus 132 ~ql~~~g~~~~~dy~~ve~~~~~id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~r~~-dP~~~~~~Y- 208 (276) T protein:vir:10 132 GSAFSFGNFDLTNYYMIKQHFETIDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQY-LLIDCYRYL-NPDDFTQVY- 208 (276) T ss_pred cceeeccceeeeeEEEEEEEecccceeecCCceeEEeeeccCCccccccccccccCCHH-HHhhccccc-CCccccccc- Confidence 999999999999999999984433333211 11222221100 001111111 133444442 231 1222 Q ss_pred cHHHHHHHHHHHHHHHHHH-HhhcccCCCCcceeeC Q lcl|NC_019526. 232 DGQQMLADGQQLQQELKER-LRKYEDGSQPLGMIIG 266 (266) Q Consensus 232 dG~~i~~EA~~e~e~L~ee-L~~~~d~~~Pl~~i~G 266 (266) |-+-+-+=|....++.=.+ |.|.+--.-|=|+=+= T Consensus 209 Nn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvn 244 (276) T protein:vir:10 209 DDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLN 244 (276) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeC Confidence 4555555565555555444 6666544455333332 No 19 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=96.03 E-value=2.5e-05 Score=45.85 Aligned_cols=202 Identities=12% Similarity=0.033 Sum_probs=112.5 Q ss_pred hcCCceEEEEecHHHHHHHHHHHHHHHHHhhccccceeEEEEeeeccCcc--------------ee-cCCC--cceeeee Q lcl|NC_019526. 31 MLGAGAVNVELTDGQLEIAIDNAVSNYRAWSSASKEEAFLHLKMFDSQSV--------------YV-LPTE--VEIVHKI 93 (266) Q Consensus 31 rLGAPvi~VeVtd~Qi~dcId~Alqlf~EyH~dg~~~~~l~ik~~e~~~~--------------y~-lpd~--V~~VtkI 93 (266) +=+|-+ -+-. +++|.+|.- .+.--+.|.+|++|-. |+ +-.. ++.|++. T Consensus 1 Ms~~~~----~s~~---eLkdyiLRr--------LGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~ 65 (268) T protein:vir:10 1 MSATRP----ASKT---ELKNYALRR--------LGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDA 65 (268) T ss_pred CCCCCC----CCHH---HHHHHHHHh--------cCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechH Confidence 111111 1222 333434432 3556788999887510 11 1110 1112222 Q ss_pred eeccccccccCCceeeehhhhhhhhhhcccccCccccchhHHHHHHHHHHHHHHHHhCCccceeeccccCeE--EEeecc Q lcl|NC_019526. 94 YRYGNGYLSSGQGSATDPFSLAFTNSYVLQSARNAGGYDLATYDFSFQYQELVARMFGRDIIFQFNPVTKKL--VLDRDI 171 (266) Q Consensus 94 ~r~~~g~~~~~~G~a~~~~~l~~~~~~~~~~~~~~~~~dL~~~~~~~qy~~~l~~~~~~~~~~~fN~~t~~L--~i~~~i 171 (266) - .+.|++++++|+++|+++-++. +..++++|. +..|++++||+.+++.+|+|.+++|+|+.++++ +|.+.+ T Consensus 66 ~-~~~g~~~t~~g~~~~~~~~~fi-----~~pp~v~gv-~~vf~~~~~~~~~~~n~~~~~~q~~lnd~~~~~~g~il~y~ 138 (268) T protein:vir:10 66 I-KTAAQSTTQQGSTNWYENNNYV-----SLPPGVLGV-NHVYTNIGASSVVPGNIFNIKYQIFLNDIYAMTHGQILHYF 138 (268) T ss_pred H-hhhhhhcccCccccccccccce-----ecCCceeeh-hhhhhcccccccccccccccchhhhhcchhhhhHHhhhhhh Confidence 1 2578888999999998764444 446788888 799999999999999999999999999999998 888999 Q ss_pred cCCceEEEehhc-c-cccc-ccccc---------cccchHHHHHHHHHHHHHHHHHHHhhccCcCCCCcee--ecHHHHH Q lcl|NC_019526. 172 RGNEEVLIHVFQ-N-LPEP-MLFQK---------QQSYPWLRDWALSEAMIMLGRNRNKFATLPGPQGTFS--MDGQQML 237 (266) Q Consensus 172 ~~~d~~lle~y~-r-~~~p-~~~~~---------~~n~~WvKdYAtALvK~~wGqnL~Kfqg~qLP~GGvT--ldG~~i~ 237 (266) ..+|.+..+.|- + ..+. ..+.. .++.++.-+|. +++..+..=| -..| -|-+=+- T Consensus 139 ~~~~~l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~-----------~i~~~~~~dP-~~~~~~YNn~WvK 206 (268) T protein:vir:10 139 MTSQYLETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFI-----------MVDLTMRQDP-DEYTGMYNDAWLK 206 (268) T ss_pred hccceeehhhhhhcccCccceEEEeeeceeEEeeccCCcccchhh-----------hhHhhcccCC-chhhhhhhhhHHH Confidence 999988888771 1 1111 11111 11112233333 2222222234 2111 1334444 Q ss_pred HHHHHHHHHHHHH-HhhcccCCCCcceeeC Q lcl|NC_019526. 238 ADGQQLQQELKER-LRKYEDGSQPLGMIIG 266 (266) Q Consensus 238 ~EA~~e~e~L~ee-L~~~~d~~~Pl~~i~G 266 (266) +=|....++.=.+ |.|.+--.-|=|+=+= T Consensus 207 dYatAL~K~~wGq~L~K~qG~qLPGGvTln 236 (268) T protein:vir:10 207 DYVEALFQQQWGRNLSKYDGIQMLGGVTLN 236 (268) T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCceeeC Confidence 4455555554444 6665443445333332 Done!