Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_KleM-RaK2 | Genbank acc : NC_019526

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 534

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	94	lcl\|NC_019526.1_cdsid_YP_007007249.1	HHsearch (proba=100.00%)
Portal	89	lcl\|NC_019526.1_cdsid_YP_007007244.1	HHsearch (proba=100.00%)
TermL	111	lcl\|NC_019526.1_cdsid_YP_007007266.1	Blast (e-value=2e-45)
MTP	NOT FOUND
Sheath	41	lcl\|NC_019526.1_cdsid_YP_007007196.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	38	lcl\|NC_019526.1_cdsid_YP_007007193.1	HHsearch (proba=100.00%)
Hc2	NOT FOUND
Tc2	67	lcl\|NC_019526.1_cdsid_YP_007007222.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc2<->Ad2	29	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	31 % 30 % 30 %
Portal	protein:vir:104500 protein:vir:104892 protein:vir:98265	P-SSM4 P-SSM2 RB43	21 % 20 % 20 %
TermL	protein:vir:104536 protein:vir:103169 protein:vir:106989	P-SSM4 Syn9 S-PM2	26 % 25 % 25 %
Sheath	protein:vir:104858 protein:vir:106984 protein:vir:98263	P-SSM2 S-PM2 RB43	20 % 20 % 19 %
Ad2	protein:vir:103451 protein:vir:7198 protein:vir:6889	RB32 T4 RB69	26 % 26 % 26 %
Tc2	protein:vir:106402 protein:vir:81023 protein:vir:6591	Aeh1 Phi1 RB49	23 % 20 % 20 %