Query lcl|NC_019517.1_cdsid_YP_007006228.1 [gene=FV3_00057] [protein=hypothetical protein] [protein_id=YP_007006228.1] [location=complement(52381..53001)] Match_columns 206 No_of_seqs 4 out of 8 Neff 1.8 Searched_HMMs 1612 Date Thu Nov 7 16:52:00 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_57 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_57_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:95259 Length: 149 95.2 6.4E-05 4E-08 43.6 4.0 141 32-206 1-143 (149) 2 protein:vir:9928 Length: 118 # 47.5 0.7 0.00043 21.4 6.5 112 37-169 1-118 (118) 3 protein:vir:104344 Length: 132 32.7 1.4 0.00087 19.8 7.8 110 38-165 1-132 (132) 4 protein:vir:79640 Length: 134 16.6 3.6 0.0022 17.5 7.5 119 37-164 1-134 (134) 5 protein:vir:5256 Length: 119 # 9.9 6.6 0.0041 16.1 6.3 104 40-165 1-119 (119) 6 protein:vir:107702 Length: 136 9.1 7.2 0.0045 15.9 5.0 122 38-198 1-136 (136) 7 protein:vir:3970 Length: 110 # 6.1 11 0.0069 14.9 5.8 105 40-169 1-110 (110) 8 protein:vir:102961 Length: 131 4.9 14 0.0086 14.3 5.8 114 38-158 1-131 (131) 9 protein:vir:3615 Length: 110 # 4.3 16 0.0098 14.0 6.4 109 40-169 1-110 (110) 10 protein:vir:94955 Length: 170 4.1 16 0.01 13.9 3.7 108 1-162 58-170 (170) No 1 >protein:vir:95259 Length: 149 # NCBI annotation: Phage hypothetical protein # Family: family:all:31734 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944892;genbank:gi:38707832;genbank:GeneID:2744045 Probab=95.21 E-value=6.4e-05 Score=43.58 Aligned_cols=141 Identities=20% Similarity=0.225 Sum_probs=89.8 Q ss_pred ccccccCcchHHHHHHHhhcCCCh-hccchHH-HHHHHHhhhheeccCCCCccchhhHHHHHHHHHHHHHHhhhhccchh Q lcl|NC_019517. 32 VPPEPDPDQPLIDIMRLLLGNIDE-ETLPDGV-IKTFLDMEKLKLNYPADPDKLPLLKYNVLVQLVRWLMMQEVSSGNAS 109 (206) Q Consensus 32 ~~~~~~~dq~lI~~iRlLlgni~~-EtLpD~~-I~~fl~~wklk~d~~~npD~~p~vlyNtli~vvrwL~~qeV~sgnas 109 (206) .+=.-||.--.+|-+|+|+|.+.. +.|.|++ .+.|+.+- +-+... ..++++||+.+|--.-+ T Consensus 1 M~YTGdPanNplDrlRil~~D~~~d~~li~ds~~q~f~~~~--------~~nerr-----Aal~~lr~iLfqlar~~--- 64 (149) T protein:vir:95 1 MCYTGDPANNPLDRVRILCTDTNNDEILIEQSVLEWFYLES--------GKDEKK-----AAIKALKYLLFQVAKMG--- 64 (149) T ss_pred CCcCCCCCcChhhhhhhhhccCCCcchhccccceeeeeecc--------CCchhH-----HHHHHHHHHHHHHHhhh--- Confidence 445556777789999999998853 3444444 55555443 222222 45799999998843222 Q ss_pred HHHHHHhhcceeEEEeeCCChHHHHhHhhHHHhCCCccccchhhhceeeeecccchhhceeeccCCcccCCccccccccc Q lcl|NC_019517. 110 ITSRLEKIGDETIEIRGGSSYAQWKDFLDWLLAHPDYVDSELDAYSRMIIIGGVRVDEGIRVKFNENSNGPFDVQGITPI 189 (206) Q Consensus 110 i~sR~EKIGdetIeVkgGSswenwKdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr~dE~~RVk~npNS~ngf~~qgi~p~ 189 (206) -||+|| |+|+|-+-|.++|--||=+.. +.++.+=-+||+.+-.+.-=+-||.|++---+-|.--- T Consensus 65 ----~Er~G~--i~~~~sd~fka~k~~l~Dl~k---------~~v~~~PYaGGIs~~Dm~m~~~nPdnV~r~~~~G~a~~ 129 (149) T protein:vir:95 65 ----DEKVGG--VYLRNSSRFKSLKAVYDDLVK---------SSVSGLPYAGGINQCDIDMRRQNPCSVKKYTEYGDAAR 129 (149) T ss_pred ----hhccCc--eEEeccHHHHHHHHHHHhhhh---------hhhhccccccccchhhHHHhcCCccccceeEEeccccc Confidence 367776 789999999999988876544 45566667999999999999999999987665554211 Q ss_pred CCCCCCCccccccccCC Q lcl|NC_019517. 190 SGLNNQPPRHPRRKLSF 206 (206) Q Consensus 190 ~~~~~qp~~~~rr~~~~ 206 (206) --+-+|--| -.--| T Consensus 130 ~~~~~~cn~---~~~~~ 143 (149) T protein:vir:95 130 YEGRDYCNR---VNGVF 143 (149) T ss_pred chhhhhhcc---ccceE Confidence 111111000 00011 No 2 >protein:vir:9928 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795690;genbank:gi:28876458;genbank:GeneID:1258013 Probab=47.50 E-value=0.7 Score=21.43 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=64.4 Q ss_pred cCcchHHHHHHHhhcCCChhccchHHHHHHHHhh----hheecc--CCCCccchhhHHHHHHHHHHHHHHhhhhccchhH Q lcl|NC_019517. 37 DPDQPLIDIMRLLLGNIDEETLPDGVIKTFLDME----KLKLNY--PADPDKLPLLKYNVLVQLVRWLMMQEVSSGNASI 110 (206) Q Consensus 37 ~~dq~lI~~iRlLlgni~~EtLpD~~I~~fl~~w----klk~d~--~~npD~~p~vlyNtli~vvrwL~~qeV~sgnasi 110 (206) -.++++++-+.+|||-....+.-|+.+..+|..- +++++- +.|-+..|.-+-..+++|+--..|+--+-|-+|- T Consensus 1 md~~~~L~~vK~~lgI~~~D~~~D~lL~~~i~~a~~~i~~~l~~~~~~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S~ 80 (118) T protein:vir:99 1 MGDKQLIDDIKLFIGISKGDGAQDELITLAIYESKERVLAKLNEYSETEITKIPDRLRFIVRDVAIKRFNRINSEGAVED 80 (118) T ss_pred CchhhHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHhcCcCCccccee Confidence 5567889999999997655566677766666432 333332 2345679998888999998777777666666654 Q ss_pred HHHHHhhcceeEEEeeCCChHHHHhHhhHHHhCCCccccchhhhceeeeecccchhhce Q lcl|NC_019517. 111 TSRLEKIGDETIEIRGGSSYAQWKDFLDWLLAHPDYVDSELDAYSRMIIIGGVRVDEGI 169 (206) Q Consensus 111 ~sR~EKIGdetIeVkgGSswenwKdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr~dE~~ 169 (206) . .+++ ++++-+- ..+|-|+|... .+....... |+||- + T Consensus 81 S-----eeG~--S~sf~~d---~~ey~~~l~~~---~~~~~~~~~-----g~v~F---i 118 (118) T protein:vir:99 81 S-----EEGK--TFKWDSY---LKEYESTLRSA---AIGKVYSGK-----GVARF---I 118 (118) T ss_pred e-----cCCe--eeeeccC---chhHHHHHHHH---hhhcccCcC-----cceee---C Confidence 3 2333 3333222 56666666642 222221111 11111 0 No 3 >protein:vir:104344 Length: 132 # NCBI annotation: hypothetical protein # Family: family:all:5122 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398973;genbank:gi:81343957;genbank:GeneID:3778876 Probab=32.71 E-value=1.4 Score=19.77 Aligned_cols=110 Identities=19% Similarity=0.307 Sum_probs=56.8 Q ss_pred CcchHHHHHHHhhcCCChhccchHHHHHHHHhhhheeccCCCCccc--hhhHHHHHHHHHHHHHHhhh-hccch---hHH Q lcl|NC_019517. 38 PDQPLIDIMRLLLGNIDEETLPDGVIKTFLDMEKLKLNYPADPDKL--PLLKYNVLVQLVRWLMMQEV-SSGNA---SIT 111 (206) Q Consensus 38 ~dq~lI~~iRlLlgni~~EtLpD~~I~~fl~~wklk~d~~~npD~~--p~vlyNtli~vvrwL~~qeV-~sgna---si~ 111 (206) -|.++++.||.|.=-. ..+||++|..+++.-++-+--..=.|+. -..+| --.|+.|+- .+||. +|. T Consensus 1 ~~~~~~e~~R~l~P~f--~kvpdevI~~wielA~lfVc~~~~g~~~~~AlaL~------taHLm~~dga~k~en~~~~t~ 72 (132) T protein:vir:10 1 MNDAILAFMRSLVPAL--KAVDDESINVWIDLARLYVCADKFGNDADRAVGLY------ALHLMLSDGAFKGENEGLETY 72 (132) T ss_pred CchHHHHHHHHhcchh--hcCChHHHHHHHHHHHHHHHhhcCchhHHHHHHHH------HHHHhhccccccccccchhhh Confidence 6669999999997444 4899999999998877654222222221 11223 235666642 23433 334 Q ss_pred HHHHhh------cceeEEEe---------eCCChHH-HHhHhhHHHhCCCccccchhhhceeeeecccch Q lcl|NC_019517. 112 SRLEKI------GDETIEIR---------GGSSYAQ-WKDFLDWLLAHPDYVDSELDAYSRMIIIGGVRV 165 (206) Q Consensus 112 sR~EKI------GdetIeVk---------gGSswen-wKdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr~ 165 (206) || +| |+.+|+.- .||||-+ |++-+.|-- =++ .-.++. -+||+-- T Consensus 73 S~--rvaS~Sl~Ge~Sisf~~~sa~~s~L~~tp~Gkl~~~L~k~~~--Ggf-----gL~t~~-~~~~cgc 132 (132) T protein:vir:10 73 SR--RMASYSLSGEFSITYDNQSAIQGDLSSSSWGRMYKALLRKKG--GGF-----GLITSA-AGGGCGC 132 (132) T ss_pred hh--hhhhhcccCceeeecccccccccccccCcHHHHHHHHHHhcc--Ccc-----cccccc-CcCCCCC Confidence 44 34 77776532 2377777 777666210 000 000000 0111111 No 4 >protein:vir:79640 Length: 134 # NCBI annotation: gp38 # Family: family:all:5122 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285527;genbank:gi:148734510;genbank:GeneID:5219998 Probab=16.56 E-value=3.6 Score=17.52 Aligned_cols=119 Identities=12% Similarity=0.014 Sum_probs=54.4 Q ss_pred cCcchHHHHHHHhhcCCChhccchHHHHHHHHhhhheeccCCCCccchhhHHHHHHHHHHHH---HHhhhhccchhHHHH Q lcl|NC_019517. 37 DPDQPLIDIMRLLLGNIDEETLPDGVIKTFLDMEKLKLNYPADPDKLPLLKYNVLVQLVRWL---MMQEVSSGNASITSR 113 (206) Q Consensus 37 ~~dq~lI~~iRlLlgni~~EtLpD~~I~~fl~~wklk~d~~~npD~~p~vlyNtli~vvrwL---~~qeV~sgnasi~sR 113 (206) -.|-.+++.+|.|.=-.+. .||++|.++++.-++-++-..-.+....++ |.|.-=+-+| +.||=.++++.. .| T Consensus 1 m~d~~~ve~Fr~l~PeF~~--vpde~l~~~~~~A~~~i~~~~~g~~~~~al-~lltAHLl~l~~~~~~~g~~~~~~~-gr 76 (134) T protein:vir:79 1 MNDIEILEQIYKIAPAFKK--VDPELIQAWIELAKDFVCEKHFKDKYFRAV-ALYTLHLMTLDGAMKQESESVESYS-HR 76 (134) T ss_pred CchHHHHHHHHHhcccccc--CCHHHHHHHHHHhhhhhcCCCCChHHHHHH-HHHHHHHHhhccccccccccccccc-ch Confidence 4455899999999755444 699999999998877775221111111122 2222112232 245544444322 12 Q ss_pred H---HhhcceeEEEe--eCCChHHH-------HhHhhHHHhCCCccccchhhhceeeeecccc Q lcl|NC_019517. 114 L---EKIGDETIEIR--GGSSYAQW-------KDFLDWLLAHPDYVDSELDAYSRMIIIGGVR 164 (206) Q Consensus 114 ~---EKIGdetIeVk--gGSswenw-------KdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr 164 (206) . +-+|++.|+-- .++.|+.| +.|+.-..+ | --+-+...-.-.||-| T Consensus 77 v~ssst~G~vSvS~a~ps~~~~~~Wl~~TpYGq~y~~L~k~---~--~GGf~~~t~~~~~~~r 134 (134) T protein:vir:79 77 IASFSLTGEFSQTFSKVSDDTSGNTLRQTPWGKMYEVLNKK---K--GGGFGLTTAFHRRCSR 134 (134) T ss_pred hhhhhhhcceeeeccCcccchhHHHHhcCHHHHHHHHHHHh---h--ccchHhhhhccccCCC Confidence 2 23687776621 12345444 233322221 2 1111111111222333 No 5 >protein:vir:5256 Length: 119 # NCBI annotation: hypothetical protein # Family: family:all:664 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852761;genbank:gi:31544036;uniprot:Q7Y5T9;genbank:GeneID:2753553 Probab=9.88 E-value=6.6 Score=16.10 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=52.0 Q ss_pred chHHHHHHHhhcCCChhccchHHHHHHHHhhhheeccCCCCccchhhHHHHHH-HHHHHHH--HhhhhccchhHHHHH-- Q lcl|NC_019517. 40 QPLIDIMRLLLGNIDEETLPDGVIKTFLDMEKLKLNYPADPDKLPLLKYNVLV-QLVRWLM--MQEVSSGNASITSRL-- 114 (206) Q Consensus 40 q~lI~~iRlLlgni~~EtLpD~~I~~fl~~wklk~d~~~npD~~p~vlyNtli-~vvrwL~--~qeV~sgnasi~sR~-- 114 (206) =+-|.-.|.+- +-=...||++|.++++.=++-++=...- .| |.=.+ -++-.|+ .|....||....-|. T Consensus 1 m~t~~~Fr~~~--PeF~~~pd~~i~~~l~~A~~~l~~~~~g---~~--~~~~~~L~~AH~l~l~~~~~~~~g~~~g~v~S 73 (119) T protein:vir:52 1 MPLTEDFLLRY--TEFGKTDAKRIGLFLSDAQAEVSKVQWG---KL--YDRGVMALTAHLLKLSADAEISGGAANRNLAS 73 (119) T ss_pred CCcHHHHHHhh--hhccCCCHHHHHHHHHHHHHhhCCcCCc---hH--HHHHHHHHHHHHHHhhhhhhccccccccceee Confidence 12234455554 3334589999999999887666521111 12 22111 1222222 244445554332333 Q ss_pred HhhcceeEEE---eeCCChHHH-------HhHhhHHHhCCCccccchhhhceeeeecccch Q lcl|NC_019517. 115 EKIGDETIEI---RGGSSYAQW-------KDFLDWLLAHPDYVDSELDAYSRMIIIGGVRV 165 (206) Q Consensus 115 EKIGdetIeV---kgGSswenw-------KdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr~ 165 (206) .++|+++|+. ..+|.|+-| ..|+.++.+-= .||--+ T Consensus 74 ~s~G~vSvS~~~~~~~~~~~~w~~~T~YG~~y~~L~r~~g---------------~Gg~Va 119 (119) T protein:vir:52 74 ESAGELSVSYTAPISANGSDDFYQLTAYGQEYLRLRRLIG---------------VGVMVA 119 (119) T ss_pred eeecceeeeeeccccCCcchhhhhcCHHHHHHHHHHHHhc---------------CCCcCC Confidence 5689999996 344677664 35666655421 122111 No 6 >protein:vir:107702 Length: 136 # NCBI annotation: hypothetical protein # Family: family:all:5122 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003900;genbank:gi:45686316;genbank:GeneID:2773042 Probab=9.06 E-value=7.2 Score=15.87 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=57.3 Q ss_pred Ccc----hHHHHHHHhhcCCChhccchHHHHHHHHhhhheeccCCCCccchhhHHHHHHHHHHHHHHh------hhhccc Q lcl|NC_019517. 38 PDQ----PLIDIMRLLLGNIDEETLPDGVIKTFLDMEKLKLNYPADPDKLPLLKYNVLVQLVRWLMMQ------EVSSGN 107 (206) Q Consensus 38 ~dq----~lI~~iRlLlgni~~EtLpD~~I~~fl~~wklk~d~~~npD~~p~vlyNtli~vvrwL~~q------eV~sgn 107 (206) -|| .+++.+|.|.=-.. ..||++|.++++.-++-+.-....+..... |--..-.|+.+ +-.+|+ T Consensus 1 ~~~~~~~~~ve~fR~l~PeF~--dvPde~i~~~~d~A~~~v~~~~~Gk~y~~a----l~lltAHLl~l~~~~~~~~~~~~ 74 (136) T protein:vir:10 1 MNQETLIAVVEQMRKLVPALR--KVPDETLYAWVEMAELFVCQKTFKDAYVKA----LALYALHLAFLDGALKGEDEDLE 74 (136) T ss_pred CCchHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHhhcCCCChhHHHHH----HHHHHHHHHhccccccccccccc Confidence 344 46788999975544 459999999999887777543333322222 22233444433 333333 Q ss_pred hhHHHHH---HhhcceeEEEeeCCChHH-HHhHhhHHHhCCCccccchhhhceeeeecccchhhceeeccCCcccCCccc Q lcl|NC_019517. 108 ASITSRL---EKIGDETIEIRGGSSYAQ-WKDFLDWLLAHPDYVDSELDAYSRMIIIGGVRVDEGIRVKFNENSNGPFDV 183 (206) Q Consensus 108 asi~sR~---EKIGdetIeVkgGSswen-wKdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr~dE~~RVk~npNS~ngf~~ 183 (206) +. -.|. +-+|+..|+. ..+-.| |. +||+.-|=- .+|.+..+ .+.+||-. T Consensus 75 ~~-s~rv~ssat~GevSVS~--a~~s~~~s~---~WL~~TpyG-------------------q~y~aL~k--~~~gGf~l 127 (136) T protein:vir:10 75 SY-SRRVTSFSLSGEFSQTF--GEVTKNQSG---DMMLSTPWG-------------------KMFEQLKA--RRRGRFAL 127 (136) T ss_pred cc-ccceehheeccceeEee--ccccCchhh---HhhhcCHHH-------------------HHHHHHHh--hcccchhh Confidence 21 2232 3489988875 433344 53 455554421 11222222 12222221 Q ss_pred ccccccCCCCCCCcc Q lcl|NC_019517. 184 QGITPISGLNNQPPR 198 (206) Q Consensus 184 qgi~p~~~~~~qp~~ 198 (206) -+ |+-+ -|. T Consensus 128 ~t-----~~~~-~c~ 136 (136) T protein:vir:10 128 MT-----GLRG-GCH 136 (136) T ss_pred hh-----cccc-cCC Confidence 10 1100 000 No 7 >protein:vir:3970 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663678;genbank:gi:21716115;genbank:GeneID:951203 Probab=6.07 E-value=11 Score=14.85 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=53.4 Q ss_pred chHHHHHHHhhcCCChhccchHHHHHHHH----hhhheeccCCCCccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHH Q lcl|NC_019517. 40 QPLIDIMRLLLGNIDEETLPDGVIKTFLD----MEKLKLNYPADPDKLPLLKYNVLVQLVRWLMMQEVSSGNASITSRLE 115 (206) Q Consensus 40 q~lI~~iRlLlgni~~EtLpD~~I~~fl~----~wklk~d~~~npD~~p~vlyNtli~vvrwL~~qeV~sgnasi~sR~E 115 (206) -++++-++++||.. + |..+.-+|+ .-+++++- +-++.|.-+-..+++|+--..|+--+.|-+|-. T Consensus 1 M~iL~~vK~~lgi~-~----D~lL~~li~~a~~~i~~~l~~--~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~S---- 69 (110) T protein:vir:39 1 MAITDDLKKLLGGS-S----DERLEVIEKRTRERLLLILSS--NIKEVPPELEYVVLDVSLKRFNRIGQEGMQSYS---- 69 (110) T ss_pred CchHHHHHHhcCCC-h----hHHHHHHHHHHHHHHHHHhCC--ChhhhhhHHHHHHHHHHHHHhccccccccceee---- Confidence 77889999999974 3 444444443 33333331 235688888888899887777776666665532 Q ss_pred hhcceeEEEeeCCChHHHHhHhhHHHhCC-Cccccchhhhceeeeecccchhhce Q lcl|NC_019517. 116 KIGDETIEIRGGSSYAQWKDFLDWLLAHP-DYVDSELDAYSRMIIIGGVRVDEGI 169 (206) Q Consensus 116 KIGdetIeVkgGSswenwKdfLDwl~~~P-dyvd~sl~~~Ss~VivGGVr~dE~~ 169 (206) .|+ +++++.+. -.++|.|-|...= +.......+..+ || |+ T Consensus 70 -eeG--~S~sf~~~--d~~~y~~~l~~y~~~~~~~~~~~~g~------~~---f~ 110 (110) T protein:vir:39 70 -QEG--LSMTFSES--DFDEYADEIESWRKSKETEGDKKIGR------FR---LY 110 (110) T ss_pred -cCC--eeeeeccc--CcchhHHHHHHHhhhccccccCccee------ee---eC Confidence 233 33333321 1455555554321 111111111111 11 11 No 8 >protein:vir:102961 Length: 131 # NCBI annotation: hypothetical protein # Family: family:all:26777 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945287;genbank:gi:39653722;uniprot:Q708M5;genbank:GeneID:2672875 Probab=4.89 E-value=14 Score=14.32 Aligned_cols=114 Identities=25% Similarity=0.283 Sum_probs=59.9 Q ss_pred CcchHHH-----HHHHhhcCCChhccchH-HHHHHHHhhhhe-eccCCCCccchhhHHHHHHHHHHHHHH----hhhhcc Q lcl|NC_019517. 38 PDQPLID-----IMRLLLGNIDEETLPDG-VIKTFLDMEKLK-LNYPADPDKLPLLKYNVLVQLVRWLMM----QEVSSG 106 (206) Q Consensus 38 ~dq~lI~-----~iRlLlgni~~EtLpD~-~I~~fl~~wklk-~d~~~npD~~p~vlyNtli~vvrwL~~----qeV~sg 106 (206) --|+|-. .+-.|+|--+.++..|. ++.+-+++-.=. .|+= |=...|.-|=|+.++.+-=|+. |...++ T Consensus 1 ~~~~lkq~~~~~~~~~~l~~~~d~~~kD~~vl~faie~v~~~Ilnyc-NikeiP~~Le~v~~~maiDll~~e~~~~~k~~ 79 (131) T protein:vir:10 1 MIQELKQDNTMYLISCVRKMRQDNYFKDMEVLHYALTQAENEILNYI-HQDSVPGRLENVWIDMTNDLLDKVKEQSVLAE 79 (131) T ss_pred ChhhhhhhhhhhhhhhhhccccccccchHHHHHHHHHHHHHHHhhhc-CCcccchhhHHHHHHHHHHHHhhhcccccccc Confidence 1111111 22337777777777887 444444333211 2222 3335666565655555544444 554443 Q ss_pred ch-----hHHHHHHhhcceeEEEeeCCChHH-HHhHhhHHHhCCCccccchhhhceee Q lcl|NC_019517. 107 NA-----SITSRLEKIGDETIEIRGGSSYAQ-WKDFLDWLLAHPDYVDSELDAYSRMI 158 (206) Q Consensus 107 na-----si~sR~EKIGdetIeVkgGSswen-wKdfLDwl~~~Pdyvd~sl~~~Ss~V 158 (206) +. ++.| =|.||-.|+-+.|+.=++ -+.|.-.|.- | -..|..+.+|| T Consensus 80 ~i~~~~g~VsS--I~eGDTsIsf~s~t~~~qrl~~~~s~l~~---Y-~~qL~~yRRL~ 131 (131) T protein:vir:10 80 KAGADDFSVKS--IKMGDTTIEKVSPYEMIQRMKQVPSSLER---Y-KRQLNRFRKLL 131 (131) T ss_pred cccccccceee--eeecceeeeccCCccHHHHHHHHHHHHhh---h-HHHHhhhcccC Confidence 22 1111 145999999988864444 5666555553 4 34778888888 No 9 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=4.29 E-value=16 Score=14.00 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=53.1 Q ss_pred chHHHHHHHhhcCCChhccchHHHHHHHHhhhheeccCCCC-ccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHhhc Q lcl|NC_019517. 40 QPLIDIMRLLLGNIDEETLPDGVIKTFLDMEKLKLNYPADP-DKLPLLKYNVLVQLVRWLMMQEVSSGNASITSRLEKIG 118 (206) Q Consensus 40 q~lI~~iRlLlgni~~EtLpD~~I~~fl~~wklk~d~~~np-D~~p~vlyNtli~vvrwL~~qeV~sgnasi~sR~EKIG 118 (206) -++++-+++|+|.. +..|=...|+.--+.-+.+++ .. ...|.-+...+++|+--..|+--+.|.+|-. .| T Consensus 1 M~~L~~vK~~lg~~-~D~lL~~li~~a~~~i~~~~~---~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S~S-----ee 71 (110) T protein:vir:36 1 MAITDDLKMLLGGS-LDERLEVIEKRTRDRLLLILG---SDIKEVPPELEYVVLDVSLKRFNRIGQEGMQSYS-----QE 71 (110) T ss_pred ChhHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHhC---CChhhhhhHHHHHHHHHHHHHhccccccccceee-----cC Confidence 78899999999964 333333333333333333333 32 4688888888888887777766666655532 22 Q ss_pred ceeEEEeeCCChHHHHhHhhHHHhCCCccccchhhhceeeeecccchhhce Q lcl|NC_019517. 119 DETIEIRGGSSYAQWKDFLDWLLAHPDYVDSELDAYSRMIIIGGVRVDEGI 169 (206) Q Consensus 119 detIeVkgGSswenwKdfLDwl~~~Pdyvd~sl~~~Ss~VivGGVr~dE~~ 169 (206) .+++++-+. -.++|.|-|.. |......... --+|-|| |+ T Consensus 72 --G~S~sf~~~--d~~~y~~~l~~---y~~~~~~~~~--~~~g~~~---f~ 110 (110) T protein:vir:36 72 --GLSMTFSES--DFDEYADEIES---WRKSRETEGD--KKIGRFR---LY 110 (110) T ss_pred --Cceeeeccc--CcchHHHHHHH---HHhhhccccC--Ccceeee---eC Confidence 233333221 14555555543 2211110000 0011111 11 No 10 >protein:vir:94955 Length: 170 # NCBI annotation: hypothetical protein # Family: family:all:703 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239280;genbank:gi:66392062;genbank:GeneID:5076600 Probab=4.14 E-value=16 Score=13.92 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=41.6 Q ss_pred CCccccccc---cCCCCCCCccccCCcCCCccCcccccccCcchHHHHHHHhhcCCChhccchHHHHHHHHhhhheeccC Q lcl|NC_019517. 1 MAWYEDEEV---IPSPPNHDGVVDTPEEPPKEDPVPPEPDPDQPLIDIMRLLLGNIDEETLPDGVIKTFLDMEKLKLNYP 77 (206) Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dq~lI~~iRlLlgni~~EtLpD~~I~~fl~~wklk~d~~ 77 (206) +.|+-.... .=+=|-++-++| =..++.+.+|++++.+=..-= +-.. T Consensus 58 ~~f~G~r~~~~Q~l~wPR~g~~~d----------------------------g~~~~~~~IP~~V~~Aq~elA---~~~~ 106 (170) T protein:vir:94 58 MAWIGAPTNPEQSMWWPCKNAVIG----------------------------GMTLSQVSIPVKVKIAVFELA---YFML 106 (170) T ss_pred cccccccCCcchhhcccccCcccC----------------------------ccccccchhhHHHHHHHHHHH---HHHH Confidence 222211100 000011111111 112455667777655422111 1112 Q ss_pred CCCccchhhHHHHHHHHHHHHHHhhhhccchhHHHHHHhhcceeEEEeeCCChHHHHhHhhHHHhCC--Cccccchhhhc Q lcl|NC_019517. 78 ADPDKLPLLKYNVLVQLVRWLMMQEVSSGNASITSRLEKIGDETIEIRGGSSYAQWKDFLDWLLAHP--DYVDSELDAYS 155 (206) Q Consensus 78 ~npD~~p~vlyNtli~vvrwL~~qeV~sgnasi~sR~EKIGdetIeVkgGSswenwKdfLDwl~~~P--dyvd~sl~~~S 155 (206) ++++..+ . ++++ ++ | ||||+.+++-..+|+-.-=-.+.+-|+ .| ..+.....+-. T Consensus 107 ~~~~~~~------------------~-~~~~-v~-~-~kVG~i~veY~~~~~~~~~~~~v~~LL-~p~l~~~~~g~~~~~ 163 (170) T protein:vir:94 107 ESGAALS------------------F-ADQT-ID-S-VKVGTIRVEFTKNSTDAGLPTFVEAML-SGFGSPVLYGSNAAR 163 (170) T ss_pred hCcccCc------------------c-cccc-ee-e-EecceeEEEecCCCCCCccHHHHHHHh-hhhhccccccccccc Confidence 2333211 1 1222 22 3 899999999876654332222332221 11 11234555555 Q ss_pred eeeeecc Q lcl|NC_019517. 156 RMIIIGG 162 (206) Q Consensus 156 s~VivGG 162 (206) |..++=| T Consensus 164 ~~~~~r~ 170 (170) T protein:vir:94 164 SIDLVRA 170 (170) T ss_pred eeeeecC Confidence 6666666 Done!