Query lcl|NC_019505.1_cdsid_YP_007004904.1 [gene=F412_gp112] [protein=neck protein] [protein_id=YP_007004904.1] [location=91586..92356] Match_columns 256 No_of_seqs 31 out of 34 Neff 3.6 Searched_HMMs 1612 Date Thu Nov 7 17:25:29 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_162 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_162_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:7199 Length: 256 # 100.0 9E-146 6E-149 815.7 20.5 256 1-256 1-256 (256) 2 protein:vir:103452 Length: 256 100.0 2E-145 1E-148 813.9 20.3 256 1-256 1-256 (256) 3 protein:vir:6890 Length: 254 # 100.0 5E-142 3E-145 795.2 18.0 254 1-256 1-254 (254) 4 protein:vir:107937 Length: 257 100.0 3E-140 2E-143 785.8 16.8 256 1-256 1-256 (257) 5 protein:vir:98258 Length: 248 100.0 5E-137 3E-140 767.7 17.5 248 1-249 1-248 (248) 6 protein:vir:80995 Length: 246 100.0 4E-134 2E-137 752.1 17.7 246 3-253 1-246 (246) 7 protein:vir:6590 Length: 246 # 100.0 6E-134 3E-137 751.1 17.4 246 3-253 1-246 (246) 8 protein:vir:101800 Length: 252 100.0 3E-133 2E-136 746.9 17.0 252 3-255 1-252 (252) 9 protein:vir:101154 Length: 252 100.0 3E-133 2E-136 746.9 17.0 252 3-255 1-252 (252) 10 protein:vir:100535 Length: 253 100.0 3E-132 2E-135 741.7 18.4 253 3-256 1-253 (253) 11 protein:vir:106285 Length: 262 100.0 2E-131 1E-134 737.0 17.5 251 1-254 1-262 (262) 12 protein:vir:5658 Length: 278 # 100.0 2E-128 1E-131 721.1 18.9 256 1-256 1-267 (278) 13 protein:vir:104476 Length: 308 100.0 3E-116 2E-119 654.1 18.8 236 20-256 1-272 (308) 14 protein:vir:106986 Length: 292 100.0 3E-112 2E-115 631.8 18.5 231 25-256 1-251 (292) 15 protein:vir:103005 Length: 390 100.0 7E-102 4E-105 575.1 18.6 244 10-256 1-256 (390) 16 protein:vir:104739 Length: 470 100.0 4.1E-88 2.6E-91 499.6 16.8 219 25-256 1-253 (470) 17 protein:vir:1385 Length: 107 # 36.0 1.2 0.00074 20.2 9.0 106 53-175 1-107 (107) 18 protein:vir:97237 Length: 122 33.1 1.4 0.00086 19.8 10.5 121 27-173 1-122 (122) No 1 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=9.3e-146 Score=815.71 Aligned_cols=256 Identities=98% Similarity=1.495 Sum_probs=255.8 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccc Q lcl|NC_019505. 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:71 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_019505. 81 TKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:71 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcC Q lcl|NC_019505. 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~ 240 (256) +||||||+|+|+||+||+|+|+|++++||+|+++++++|||+|+++++|++|+|++++|++++|++||++|+||++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~ 240 (256) T protein:vir:71 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|NC_019505. 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) ||++++++||||+||| T Consensus 241 ~G~~~~~~pfd~~~~~ 256 (256) T protein:vir:71 241 RGKSFESSPFDNDFMD 256 (256) T ss_pred CCCCCcCCCccccccC Confidence 9999999999999999 No 2 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=2e-145 Score=813.87 Aligned_cols=256 Identities=98% Similarity=1.499 Sum_probs=255.8 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccc Q lcl|NC_019505. 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:10 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_019505. 81 TKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:10 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcC Q lcl|NC_019505. 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~ 240 (256) +||||||+|+|+||+||+|+|+|++++||+|+++++++|+|+|++++||++|+|++++++++++++||++|++|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~ 240 (256) T protein:vir:10 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|NC_019505. 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) ||++++++||||+||| T Consensus 241 ~G~~~~~~pfd~~~~~ 256 (256) T protein:vir:10 241 RGKSFESSPFDNDFMD 256 (256) T ss_pred CCCCCcCCCccccccC Confidence 9999999999999999 No 3 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=5.2e-142 Score=795.16 Aligned_cols=254 Identities=89% Similarity=1.416 Sum_probs=252.6 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccc Q lcl|NC_019505. 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (254) T protein:vir:68 1 MATYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKF 80 (254) T ss_pred CcccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_019505. 81 TKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (254) T protein:vir:68 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (254) T ss_pred ccceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcC Q lcl|NC_019505. 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~ 240 (256) +||||||+|+|+||+||+|+|+|++++||+|+++++++|||+||++|+|++|+++++++|++++++||++||+|++|||+ T Consensus 161 ~GKn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~ 240 (254) T protein:vir:68 161 VGKNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNN 240 (254) T ss_pred hCCceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|NC_019505. 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) ||++ .+||||+||+ T Consensus 241 ~g~~--~~pf~~~~~~ 254 (254) T protein:vir:68 241 RGRQ--NSPFDDGFMN 254 (254) T ss_pred CCCC--CCcccccccC Confidence 9985 6899999999 No 4 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=2.6e-140 Score=785.80 Aligned_cols=256 Identities=69% Similarity=1.191 Sum_probs=255.6 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccc Q lcl|NC_019505. 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||++||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (257) T protein:vir:10 1 MATFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKF 80 (257) T ss_pred CcccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_019505. 81 TKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (257) T protein:vir:10 81 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 160 (257) T ss_pred ccceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcC Q lcl|NC_019505. 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~ 240 (256) +||||||+|+|+||+||+|+|.|+++++++|.++++.+|||+|+++++|++|+|+++++|++++++||++||+|++|||+ T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~ 240 (257) T protein:vir:10 161 VGTNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 240 (257) T ss_pred hCCceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|NC_019505. 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) ||++...+||||+||+ T Consensus 241 ~g~~~~~~pf~~~~~~ 256 (257) T protein:vir:10 241 RGEDAPPTAFDDAFLD 256 (257) T ss_pred CCCCCCCCcccchhcc Confidence 9999999999999999 No 5 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=5.2e-137 Score=767.74 Aligned_cols=248 Identities=52% Similarity=0.945 Sum_probs=247.2 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccc Q lcl|NC_019505. 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 80 (256) |+|||+|||||||+++||++||++++||||||+|+|++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (248) T protein:vir:98 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) T ss_pred CcccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_019505. 81 TKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||| +|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) T protein:vir:98 81 TKSWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-Cchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 69999 Q ss_pred cCCceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcC Q lcl|NC_019505. 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~ 240 (256) +||||||+|+|+||+||+|+|+|++++||+|+++++++|||+|++++||++|+|+++++|++++++||++|++|++|||+ T Consensus 160 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~ 239 (248) T protein:vir:98 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) T ss_pred hCCCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCC Q lcl|NC_019505. 241 RGKSFESSP 249 (256) Q Consensus 241 ~G~~~~~~p 249 (256) +|+|++++| T Consensus 240 ~g~~~~~~~ 248 (248) T protein:vir:98 240 RGSPFATLP 248 (248) T ss_pred cCCCccCCC Confidence 999999999 No 6 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=3.7e-134 Score=752.08 Aligned_cols=246 Identities=61% Similarity=1.124 Sum_probs=243.0 Q ss_pred ccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccccc Q lcl|NC_019505. 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 82 (256) -||+|||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 83 AWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) ||+|||||+||+||+|++++|||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcCCC Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~~G 242 (256) |||||+|+|+||+||+|+|+|++++||+|++++.++|||+|+++++|++|+++++++|++++.+||++||+|++|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccc Q lcl|NC_019505. 243 KSFESSPFDND 253 (256) Q Consensus 243 ~~~~~~pf~~~ 253 (256) +||||- T Consensus 241 -----spf~~~ 246 (246) T protein:vir:80 241 -----SPFADF 246 (246) T ss_pred -----CccccC Confidence 667654 No 7 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=5.6e-134 Score=751.12 Aligned_cols=246 Identities=61% Similarity=1.139 Sum_probs=243.0 Q ss_pred ccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccccc Q lcl|NC_019505. 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 82 (256) -||+|||||||+++||++|++++|||||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 83 AWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) ||+|||||+||+||+|++++|||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcCCC Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~~G 242 (256) |||||+|+|+||+||+|+|+|++++||+|++++.++|||+|+++++|++|+++++++|++++.+||++||+|++|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccc Q lcl|NC_019505. 243 KSFESSPFDND 253 (256) Q Consensus 243 ~~~~~~pf~~~ 253 (256) +||||- T Consensus 241 -----spf~~~ 246 (246) T protein:vir:65 241 -----SPFADF 246 (246) T ss_pred -----CccccC Confidence 667654 No 8 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=3.3e-133 Score=746.91 Aligned_cols=252 Identities=57% Similarity=0.959 Sum_probs=247.5 Q ss_pred ccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccccc Q lcl|NC_019505. 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 82 (256) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 83 AWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcCCC Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~~G 242 (256) |||||+|+|+||+||+|+|+|++++||+|+ +.++.|||+||+++||++|+++++|+|++++++||++||+|++||+++| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccccc Q lcl|NC_019505. 243 KSFESSPFDNDFM 255 (256) Q Consensus 243 ~~~~~~pf~~~~~ 255 (256) .+...+||..-=- T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 9988899965333 No 9 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=3.3e-133 Score=746.91 Aligned_cols=252 Identities=57% Similarity=0.959 Sum_probs=247.5 Q ss_pred ccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccccc Q lcl|NC_019505. 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 82 (256) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 83 AWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcCCC Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~~G 242 (256) |||||+|+|+||+||+|+|+|++++||+|+ +.++.|||+||+++||++|+++++|+|++++++||++||+|++||+++| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccccc Q lcl|NC_019505. 243 KSFESSPFDNDFM 255 (256) Q Consensus 243 ~~~~~~pf~~~~~ 255 (256) .+...+||..-=- T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 9988899965333 No 10 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=3e-132 Score=741.67 Aligned_cols=253 Identities=58% Similarity=0.980 Sum_probs=247.1 Q ss_pred ccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccccc Q lcl|NC_019505. 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 82 (256) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+||++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 83 AWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcCCC Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~~G 242 (256) |||||+|+|+||+||+|+|+||+++||+|+ +.++.|||+||++++|++|+++.+++|++++++||++||+|++||+++| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999999 7779999999999999999999999999999999999999999999999 Q ss_pred CcccCCCccccccC Q lcl|NC_019505. 243 KSFESSPFDNDFMD 256 (256) Q Consensus 243 ~~~~~~pf~~~~~~ 256 (256) .....|||...=-. T Consensus 240 ~~g~~spf~~~~~~ 253 (253) T protein:vir:10 240 VNSFNSPFGRHEGQ 253 (253) T ss_pred CccccCcccccCCC Confidence 98889999653222 No 11 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=2.1e-131 Score=737.03 Aligned_cols=251 Identities=47% Similarity=0.829 Sum_probs=243.2 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeeccccccccccccccc Q lcl|NC_019505. 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 80 (256) |+|||+|||||||+++||++|++++|||||||+++|++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF 80 (262) T protein:vir:10 1 MFARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKF 80 (262) T ss_pred CcccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_019505. 81 TKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ 160 (262) T protein:vir:10 81 KKTYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVK 160 (262) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcC Q lcl|NC_019505. 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~ 240 (256) +||||||+|+|+||+||||+|+|++++||+|... ..+|.|++++||++|+++++++|++++++|+++||+|+++||+ T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e---~~~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~ 237 (262) T protein:vir:10 161 REQLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGE---DDPLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIG 237 (262) T ss_pred hCCceEEEEEEEEEeeCCccccccCccccccccc---cccccccccccceeecccccccchhHHhhhhhhhcchhcccCC Confidence 9999999999999999999999999999999744 2269999999999999999999999999999999999999999 Q ss_pred CCCcc---------cCCCccc--cc Q lcl|NC_019505. 241 RGKSF---------ESSPFDN--DF 254 (256) Q Consensus 241 ~G~~~---------~~~pf~~--~~ 254 (256) +|+++ ..+|||| .| T Consensus 238 ~gsp~~~~~~~~~~~~~~fdd~~~~ 262 (262) T protein:vir:10 238 NGTPIAEHKPTKPAPVSAFDDLESF 262 (262) T ss_pred CCCcccccCCCCCCCCChhhhhhcC Confidence 99775 4578886 24 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=1.7e-128 Score=721.10 Aligned_cols=256 Identities=44% Similarity=0.772 Sum_probs=240.3 Q ss_pred Cccccc---ceeeeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeecccccccccccc Q lcl|NC_019505. 1 MATYDK---NLFAKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLK 77 (256) Q Consensus 1 m~~~~~---~lfa~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~ 77 (256) |+|||+ |||||||+++||++|++++|||||||++||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++ T Consensus 1 m~~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~ 80 (278) T protein:vir:56 1 MGAYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPM 80 (278) T ss_pred CccccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccc Confidence 999999 69999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCc Q lcl|NC_019505. 78 NKFTKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDP 157 (256) Q Consensus 78 skF~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~P 157 (256) |||++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++| T Consensus 81 skF~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~P 160 (278) T protein:vir:56 81 SKFTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDP 160 (278) T ss_pred cccccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhcCCceEEEEEEEEeecCCCccCCCCCc--cccc-cCCcccc-----eeeecccCCCcceecCccccceeeeeecccc Q lcl|NC_019505. 158 FYQLGQNAIRKITAGKFIYSGEEINPVLQK--NEGI-NIPEFSE-----LELNPVRNLNGIHDINIDQYAEVDQINSEAK 229 (256) Q Consensus 158 FyQ~Gk~~v~~l~ce~F~Ys~E~i~t~~~~--iD~i-~~~~~~~-----l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~ 229 (256) |||+||+|||+|+|+||+||+|+|+||.++ +|.| ++.++++ |||.|+.+++|++|++++++++++++++||+ T Consensus 161 FYQ~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~ 240 (278) T protein:vir:56 161 WYMNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVD 240 (278) T ss_pred hhhhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhccc Confidence 999999999999999999999999988666 5555 4566666 9999999999999999999999999999999 Q ss_pred eeeeeeeEEcCCCCcccCCCccccccC Q lcl|NC_019505. 230 EYVEPYVVVNNRGKSFESSPFDNDFMD 256 (256) Q Consensus 230 ~~ve~~~~i~~~G~~~~~~pf~~~~~~ 256 (256) +|++|++||+++|+..+..|.-..+-. T Consensus 241 ~f~~~~~v~~~~~~~~~t~~~n~~~g~ 267 (278) T protein:vir:56 241 KFYESEQVVPSGSDVQPTDPRNATIGF 267 (278) T ss_pred eeeecCceecCCCCccccCcccccCCC Confidence 999999999998866444443332210 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=2.8e-116 Score=654.12 Aligned_cols=236 Identities=31% Similarity=0.521 Sum_probs=217.2 Q ss_pred hhhhcccc----------cceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeecccccccccccccccccceeeeee Q lcl|NC_019505. 20 QTNETEIL----------NPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTKAWKFAAY 89 (256) Q Consensus 20 ~~~~~~~~----------NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY 89 (256) -+++++.+ |||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~py~~~~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF~~a~~ieaY 80 (308) T protein:vir:10 1 MAIQNSPAQDYVQSDYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKFESAKAIRAY 80 (308) T ss_pred CccccCCCCCcccccccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhcccccccccccccccccceeEEEE Confidence 44444444 45569999999999999999999999999999999999999999999999999999999999 Q ss_pred echhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCC-------CCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 90 LNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGK-------EPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 90 l~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~-------~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) |+|||||+|+++||||||||++|||||+|||+||+++++++ ||+|||||||||+|+|||||||||++||||+| T Consensus 81 ~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE~~~PFyQ~G 160 (308) T protein:vir:10 81 VNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVEVERPFYQLG 160 (308) T ss_pred eechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999984 99999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeeccccee---eeeeeEEc Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEY---VEPYVVVN 239 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~---ve~~~~i~ 239 (256) |||||+|+|+||+||+|+|+||+++||+|+++++++|||+|+++++|++++|++++++++++++||+.+ ++++.|+| T Consensus 161 k~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds~v~~ItV~N 240 (308) T protein:vir:10 161 RNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDASTRTLIVIN 240 (308) T ss_pred CceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecCCceEEEEEe Confidence 999999999999999999999999999999999999999999999999999999999999999999877 88988888 Q ss_pred CCCCcccCCCc---------------cc-cccC Q lcl|NC_019505. 240 NRGKSFESSPF---------------DN-DFMD 256 (256) Q Consensus 240 ~~G~~~~~~pf---------------~~-~~~~ 256 (256) ++|+. +++|= +. +.++ T Consensus 241 ~gGsf-tspptItGsts~a~~t~~s~~~~~nt~ 272 (308) T protein:vir:10 241 RSGTF-TVPETVTGGTSSASWTTATYNTIDNQN 272 (308) T ss_pred CCCce-eeCcEEEeccCCceeEEEeeeecccCC Confidence 77755 44442 11 1111 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=3.3e-112 Score=631.77 Aligned_cols=231 Identities=26% Similarity=0.496 Sum_probs=218.1 Q ss_pred ccccceeE--ecccchhHHHHHHHHHHHHHhcCceEEEeeeeecccccccccccccccccceeeeeeechhhccCCCcch Q lcl|NC_019505. 25 EILNPYVN--FNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTKAWKFAAYLNSFEGYEGAKSF 102 (256) Q Consensus 25 ~~~NpYfN--~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaYl~n~egy~g~~d~ 102 (256) --|||||| +|||.+||+|+|+||+|||||||+|||||||++|+ |++|+|+++|||++||+|||||+||+||+|+++| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 56999999 68999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceEeeeEEEEEcchhhhhhhcC------CCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEeec Q lcl|NC_019505. 103 FGNFGMQVQDEVTLSINPNLFKHQVNG------KEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAIRKITAGKFIY 176 (256) Q Consensus 103 fSKFG~~~~DE~tf~Is~~rF~~~~~~------~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v~~l~ce~F~Y 176 (256) |||||||++|||||+|||+||++++++ +||||||||||||+|+|||||||||++||||+||||||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999 Q ss_pred CCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeeccccee---eeeeeEEcCCCCcccCCCcccc Q lcl|NC_019505. 177 SGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEY---VEPYVVVNNRGKSFESSPFDND 253 (256) Q Consensus 177 s~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~---ve~~~~i~~~G~~~~~~pf~~~ 253 (256) |+|+|+|++++||+|+++.+++|+|.|+++++|+++++++++++.+.++++|.++ ++++.|+|++|+..++.+=--. T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~i~G~ 239 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGESVTGN 239 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCceeeEe Confidence 9999999999999999999999999999999999999999999999999999777 7799999999988554432211 Q ss_pred ---------ccC Q lcl|NC_019505. 254 ---------FMD 256 (256) Q Consensus 254 ---------~~~ 256 (256) ..+ T Consensus 240 ~Sga~~~v~si~ 251 (292) T protein:vir:10 240 DSGSVWVVDSFD 251 (292) T ss_pred ecCCeEEeeEEE Confidence 111 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=7.1e-102 Score=575.12 Aligned_cols=244 Identities=27% Similarity=0.461 Sum_probs=217.1 Q ss_pred eeecCCcchhhhhhcccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeecccccccccccccccccceeeeee Q lcl|NC_019505. 10 AKLENRTGYSQTNETEILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTKAWKFAAY 89 (256) Q Consensus 10 a~le~~~gy~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY 89 (256) -...+.+||+++++.+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||+|||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred echhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcC-------CCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_019505. 90 LNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNG-------KEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 90 l~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~-------~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 162 (256) |+|||||+|++|||||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 9999999999999999999999999999999999999998 599999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccce-----eeeeecccceeeeeeeE Q lcl|NC_019505. 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAE-----VDQINSEAKEYVEPYVV 237 (256) Q Consensus 163 k~~v~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e-----~~~~~~e~~~~ve~~~~ 237 (256) |+|+|+|+|++|+||+|++++++++++.|.....+.+.+.+..++.+.+......... ..++.. ..-|.. ++ T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~--~g~Vt~-vt 237 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATIS--GDAVDA-VT 237 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEec--CCeEEE-EE Confidence 9999999999999999999999999999999999999999988887766655544221 111111 122333 88 Q ss_pred EcCCCCcccCCCccccccC Q lcl|NC_019505. 238 VNNRGKSFESSPFDNDFMD 256 (256) Q Consensus 238 i~~~G~~~~~~pf~~~~~~ 256 (256) |++.|++|++.|.-.--.. T Consensus 238 Itn~GsGYt~~~~ptVtis 256 (390) T protein:vir:10 238 VTDGGEHYKSALPPTVTIT 256 (390) T ss_pred EeeCCCCcccCceeEEEec Confidence 9999999988755332222 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=4.1e-88 Score=499.64 Aligned_cols=219 Identities=32% Similarity=0.539 Sum_probs=181.9 Q ss_pred ccccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeecccccccccccccccccceeeeeeechhhccCCCcchhh Q lcl|NC_019505. 25 EILNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGEDLKNKFTKAWKFAAYLNSFEGYEGAKSFFG 104 (256) Q Consensus 25 ~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaYl~n~egy~g~~d~fS 104 (256) -.|||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||+|||+|||||+|||||+|+++||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 78999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceEeeeEEEEEcchhhh------------------hhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceE Q lcl|NC_019505. 105 NFGMQVQDEVTLSINPNLFK------------------HQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAI 166 (256) Q Consensus 105 KFG~~~~DE~tf~Is~~rF~------------------~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v 166 (256) |||+|++|||+|+|||+||+ +|+.+.||+|||||||||+|+||||+|||+++||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999995 566679999999999999999999999999999999999999 Q ss_pred EEEEEEEeecCCCccCCCCCccccccCCcccceeeecccCCCcceecCccccceeeeeecccceeeeeeeEEcCCCCccc Q lcl|NC_019505. 167 RKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRGKSFE 246 (256) Q Consensus 167 ~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~L~~i~~~~G~~d~~~~~~~e~~~~~~e~~~~ve~~~~i~~~G~~~~ 246 (256) |+|+|++|+|++|.+++.+..++.......+...+.......+........-. .+- -+++++.|.+++ T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t~t~~~~g~~~~~t~~~~~g-----------~vt-~ititn~Gsgyt 227 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISKLQLVGIGRTAEVAASIGVG-----------YVR-EIFLNNDGSGFT 227 (470) T ss_pred EEeeeceeEecCCccccceecccccccccccceeeeecCCCccceeeeeecce-----------eee-EeEeecccccee Confidence 99999999999999999999999998777776555543322222221111111 111 144455555554 Q ss_pred CCCcc----------------ccccC Q lcl|NC_019505. 247 SSPFD----------------NDFMD 256 (256) Q Consensus 247 ~~pf~----------------~~~~~ 256 (256) ..|-= ..-.. T Consensus 228 ~~ptVti~~~~~~~~~~a~~~~~t~~ 253 (470) T protein:vir:10 228 SPPTITFSASPAFTDARAVGILTTRA 253 (470) T ss_pred ccCEEEEccCCCCCCccceeeEeecc Confidence 43320 00000 No 17 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=36.01 E-value=1.2 Score=20.16 Aligned_cols=106 Identities=13% Similarity=0.167 Sum_probs=73.7 Q ss_pred hcCce-EEEeeeeecccccccccccccccccceeeeeeechhhccCCCcchhhhcCceEeeeEEEEEcchhhhhhhcCCC Q lcl|NC_019505. 53 MRGVE-CYYVPREYVSPDLVFGEDLKNKFTKAWKFAAYLNSFEGYEGAKSFFGNFGMQVQDEVTLSINPNLFKHQVNGKE 131 (256) Q Consensus 53 m~Gvd-v~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaYl~n~egy~g~~d~fSKFG~~~~DE~tf~Is~~rF~~~~~~~~ 131 (256) |.+-+ |....++- .+|. .|... ..+...+++-|.+....| .++++-=+++..-.++|+| ||..-++..+ T Consensus 1 ~~~~hRI~i~~~~~-~~D~-~G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~i---Ry~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLEE-KNIK-GRRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKI---RYCKKVEELR 70 (107) T ss_pred CCcceEEEEEeeee-eeCC-CCCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEE---EecCCccccc Confidence 76644 55555554 4574 45443 469999999999998744 6788866666667777777 3444455556 Q ss_pred CccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEee Q lcl|NC_019505. 132 PKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAIRKITAGKFI 175 (256) Q Consensus 132 P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v~~l~ce~F~ 175 (256) +..++-|-+ .+..|+|..|.+.+ .++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 667777766 78999999997543 25557899999876 No 18 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=33.08 E-value=1.4 Score=19.82 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=78.4 Q ss_pred ccceeEecccchhHHHHHHHHHHHHHhcCceEEEeeeeecccccccccc-cccccccceeeeeeechhhccCCCcchhhh Q lcl|NC_019505. 27 LNPYVNFNHYQNSQILADVLVAESIQMRGVECYYVPREYVSPDLVFGED-LKNKFTKAWKFAAYLNSFEGYEGAKSFFGN 105 (256) Q Consensus 27 ~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed-~~skF~~a~~ieaYl~n~egy~g~~d~fSK 105 (256) .+.| ..-|+.+.. .|+-+|..|.+.+.+-..-|+-.++. +-+.-...|+..+.+.+|.--.=+|.+ T Consensus 1 M~~y------~~~~~~a~~----Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARF------DSAIALAKK----LIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccc------hHHHHHHHH----HHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 2233 334444444 45559999998888766667666653 223446778999999888754433332 Q ss_pred cCceEeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEE Q lcl|NC_019505. 106 FGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAIRKITAGK 173 (256) Q Consensus 106 FG~~~~DE~tf~Is~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v~~l~ce~ 173 (256) |+..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| .|--..|+|..-+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 456665544432222 357888999965 778899999987766 4555677777777 Done!