BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019410.1_cdsid_YP_006989713.1 [gene=D867_gp021] [protein=intein-containing putative terminase large subunit precursor] [protein_id=YP_006989713.1] [location=209621..212353] (910 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 131 3e-32 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 119 2e-28 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 93 1e-20 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 92 2e-20 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 92 3e-20 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 91 5e-20 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 82 3e-17 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 82 4e-17 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 82 4e-17 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 82 4e-17 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 72 3e-14 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 70 1e-13 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 70 1e-13 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 68 4e-13 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 66 1e-12 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 65 3e-12 gi|7243|lcl|protein:vir:103223 Length: 168 # NCBI annotation: pu... 61 5e-11 gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: Te... 55 3e-09 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 54 1e-08 gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 50 1e-07 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 50 1e-07 gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: p... 42 3e-05 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 39 3e-04 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 34 0.010 gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: put... 33 0.015 gi|15217|lcl|protein:vir:2600 Length: 353 # NCBI annotation: gp4... 32 0.026 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 32 0.028 gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp6... 32 0.040 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 29 0.26 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 28 0.38 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 28 0.56 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 28 0.57 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 28 0.59 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 28 0.61 gi|15780|lcl|protein:vir:6245 Length: 327 # NCBI annotation: gp3... 27 0.73 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 27 0.74 gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: ... 27 0.84 gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: pu... 27 0.89 gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 26 2.4 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 25 3.3 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 25 3.9 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 24 6.8 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 24 6.9 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 24 8.6 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 24 8.6 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 24 8.6 gi|12907|lcl|protein:vir:80398 Length: 431 # NCBI annotation: Bc... 24 8.6 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 24 9.0 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 131 bits (330), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 192/438 (43%), Gaps = 64/438 (14%) Query: 472 STYASRLFVAWRLGRDPRQKIIGGGHSQRFVENEFSGKIRNLVRTPQYRDVFPDVVIDHA 531 S SR F AW G++P +II +S + + ++ ++ P Y +FP+ ++ Sbjct: 77 SELFSRRFPAWVFGQNPELQIIACSYSADLA-SRMNLDVQRIIDDPIYHSIFPNTALNIK 135 Query: 532 TSA---------KDMWAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIER 582 A +++ I GH G Y + G G I G+ A +DDP + + A S R Sbjct: 136 NIATISGKPLRNSEIFEIVGHLGAYRSAGVGGGITGMGADIAIIDDPVKDAKEANSQTVR 195 Query: 583 EKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAPALC 642 + I W+ + +RL P + V L MTR+HE+DL G +IK E G D++ IV+ PA+ Sbjct: 196 DSIWDWYTTTLYTRLSPKSGVLLGMTRWHEDDLAGRLIK---EAENGGDQWRIVKFPAIA 252 Query: 643 YDPENDVLGRALGEVLW-DYYDLHYFKRKRSEWKYQRFALVYQQLADAASDTSI-ASKFQ 700 E D R GE L + +DL + R Q + +YQQ I S F Sbjct: 253 ---EEDEEFRKEGEPLHPERFDLERLNKIRQAVGSQAWNALYQQRPSNKGGGIIKGSWFG 309 Query: 701 TYDHLPHLEPKVLKARLDAGHADERGRPIPDRKEHFRRVVVSVDSANKPGARNDYSVAQV 760 Y P ++ K + A D+A K NDYSV V Sbjct: 310 RYKVPPIIKVKAIYA----------------------------DTAQKTKQHNDYSVFIV 341 Query: 761 WGETHARKHYLIYQERKKVDITGLTEMIERVAKRYEVD---AIL----VEDKGNGTAYIQ 813 G+ K Y++ R K + L + ++ V +++ IL VEDK +GT+ IQ Sbjct: 342 AGKGADGKAYILDLIRGKWEAPELEQTLKDVWAKHKAKKETGILTRANVEDKASGTSLIQ 401 Query: 814 ARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAGEVFLPGKAPWLDLLIREIG 873 + RR PI IQV + K R + IE+G V LP APW+ I E Sbjct: 402 ------TIRRNNQIPITPIQVDA--DKYTRVLGVQGYIESGYVMLPESAPWIADFINECE 453 Query: 874 QFP---EGAHDDQVDAMT 888 F AHDDQVDA+ Sbjct: 454 AFTATDSHAHDDQVDALV 471 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/427 (27%), Positives = 195/427 (45%), Gaps = 40/427 (9%) Query: 472 STYASRLFVAWRLGRDPRQKIIGGGHSQRFVENEFSGKIRNLVRTPQYRDVFPDVVIDHA 531 S + F ++ L ++P++++I +S + +F K R+ ++ D D+ I+ A Sbjct: 75 SMTITETFPSYFLMKNPKKRVITTSYSDALAK-QFGRKNRDKIKMAG--DQLFDIHINPA 131 Query: 532 TSAKDMWAIAGHGG-QYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFF 590 S W+I +GG Y+ G A G A + +DDP ++ E AES R+KI + Sbjct: 132 NSGVTDWSIDQYGGGMYSTSMLGGAT-GRGADLLIIDDPIKNREEAESKTIRDKIYQEWE 190 Query: 591 GDVGSRLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVL 650 +RL V +IMTR+HE+DL G ++K N + + PA+ END+L Sbjct: 191 STFFTRLHKGHSVIVIMTRWHEDDLIGRLLKAN------TLPWERIRLPAIA--EENDLL 242 Query: 651 GRALGEVLWDY--YDLHYFKRKRSEWKYQRFALVYQQLADAASDTSIASKFQTYDHLPHL 708 GR +G+ L Y+ + + + + +A +YQQ A K+ Y ++P Sbjct: 243 GREIGQALCPELGYNEEWAEITKKTVGSRTWASLYQQRPRPAEGAIFKEKWLRY-YVPSE 301 Query: 709 EPKVLKARLDAGHADERGRPIPDRKEHFRRVVVSVDSANKPGARNDYSVAQVWGETHARK 768 E + + + G E +P F + S D A K ++D+ VW A Sbjct: 302 E---FRKKYNLG---EDVAILP---RLFDKSAQSWDMAFKDTKKSDFVAGHVWNRKKA-D 351 Query: 769 HYLIYQERKKVDITGLTEMIERVAKRYEVD-AILVEDKGNGTAYIQA-RGQTDSQRRLAP 826 + I + ++ + + R+ ++ + A +E+K NG A +Q +G+ Sbjct: 352 FFFIDRIHDRMGLPETLNAVRRLTIKHPLAIAKYIEEKANGPAVMQTLKGEITGM----- 406 Query: 827 APIEAIQVPSTYSKEFRFNEIVPMIEAGEVFLPGK--APWLDLLIREIGQFPEGAHDDQV 884 I V KE R + P+ E+G V+ P APW+ +I E+ FP G HDD V Sbjct: 407 -----IGVEPEGGKETRAYAVTPLFESGNVYFPHPLYAPWISDVIEEMLAFPNGEHDDDV 461 Query: 885 DAMTQYL 891 DAMTQ L Sbjct: 462 DAMTQAL 468 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 113/461 (24%), Positives = 189/461 (40%), Gaps = 67/461 (14%) Query: 447 GVRPCRCLTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRD----PRQKIIGGGHSQRFV 502 G RP LT +H S+ SR + GR P +I ++ Sbjct: 77 GKRPVLMLTAPPQHG---------KSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLA 127 Query: 503 ENEFSGKIRNLVRTPQYRDVFPDVVIDHATSAKDMWA--IAGHGGQYAAKGAGQAIHGLR 560 S +++++ P YR VFP V + KD GG++ G G + G Sbjct: 128 RRN-STDAKSIMKEPVYRAVFPHVSLIGFKGNKDTSNEFDVPEGGEFRGVGVGGPLTGFS 186 Query: 561 AHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEII 620 +DD ++ E A SA+ ++ ++ W+ + +RL L+ V LI T + DL + Sbjct: 187 IDVGIIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV- 245 Query: 621 KLNQEVLTGADRYHIVEAPALCYDPEN-----DVLGRALGEVLWDYYDLHYFKRKRSEWK 675 + + G + ++ PAL DP+ D+ AL L L +R SE+ Sbjct: 246 ---RRKMEGQPNFTLLSFPAL-NDPDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFW 301 Query: 676 YQRFALVYQQLADAASDTSIASKFQTYDHLPHLEPKVLKARLDAGHADERGRPIPDRKEH 735 + + +YQQ+ S + DHL + + + + Sbjct: 302 W---SAMYQQVP-----LSEFGAIFSRDHLQYYR-------------------VAELPKQ 334 Query: 736 FRRVVVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRY 795 F RV++S D+ K G +D+ VWG+T + +LI R+K+ + I + +++ Sbjct: 335 FVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIADLKRKH 394 Query: 796 -EVDAILVEDKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAG 854 V + +E+ NG A I D ++ P +E VP SKE R + + + Sbjct: 395 AAVSRVYIEEAANGAALI------DMLKKHFPM-LEG--VPPLGSKEARAHAVAWVWSNN 445 Query: 855 EVFL--PGKAPWLDLLIREIGQFPE--GAHDDQVDAMTQYL 891 V L P + P + ++ EI FP+ HDD VD MT L Sbjct: 446 CVMLPHPDERPGIGPVVNEITSFPDTITGHDDSVDGMTIAL 486 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 113/461 (24%), Positives = 188/461 (40%), Gaps = 67/461 (14%) Query: 447 GVRPCRCLTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRD----PRQKIIGGGHSQRFV 502 G RP LT +H S+ SR + GR P +I ++ Sbjct: 77 GKRPVLMLTAPPQHG---------KSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLA 127 Query: 503 ENEFSGKIRNLVRTPQYRDVFPDVVIDHATSAKDMWA--IAGHGGQYAAKGAGQAIHGLR 560 S +++++ P YR VFP V + KD GG++ G G + G Sbjct: 128 RRN-STDAKSIMKEPVYRAVFPHVSLIGFKGNKDTSNEFDVPEGGEFRGVGVGGPLTGFS 186 Query: 561 AHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEII 620 +DD ++ E A SA+ ++ ++ W+ + +RL L+ V LI T + DL + Sbjct: 187 IDVGIIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV- 245 Query: 621 KLNQEVLTGADRYHIVEAPALCYDPEN-----DVLGRALGEVLWDYYDLHYFKRKRSEWK 675 + + G + ++ PAL DP+ D+ AL L L +R SE+ Sbjct: 246 ---RRKMEGQPNFTLLSFPAL-NDPDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFW 301 Query: 676 YQRFALVYQQLADAASDTSIASKFQTYDHLPHLEPKVLKARLDAGHADERGRPIPDRKEH 735 + + +YQQ+ S DHL + + + + Sbjct: 302 W---SAMYQQVP-----LSEFGAIFPRDHLQYYR-------------------VAELPKQ 334 Query: 736 FRRVVVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRY 795 F RV++S D+ K G +D+ VWG+T + +LI R+K+ + I + +++ Sbjct: 335 FVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIADLKRKH 394 Query: 796 -EVDAILVEDKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAG 854 V + +E+ NG A I D ++ P +E VP SKE R + + + Sbjct: 395 AAVSRVYIEEAANGAALI------DMLKKHFPM-LEG--VPPLGSKEARAHAVAWVWSNN 445 Query: 855 EVFL--PGKAPWLDLLIREIGQFPE--GAHDDQVDAMTQYL 891 V L P + P + ++ EI FP+ HDD VD MT L Sbjct: 446 CVMLPHPDERPGIGPVVNEITSFPDTVTGHDDSVDGMTIAL 486 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 447 GVRPCRCLTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRD----PRQKIIGGGHSQRFV 502 G RP LT +H S+ SR + GR P +I ++ Sbjct: 77 GKRPVLMLTAPPQHG---------KSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLA 127 Query: 503 ENEFSGKIRNLVRTPQYRDVFPDVVIDHATSAKDMWA--IAGHGGQYAAKGAGQAIHGLR 560 + +++++ P YR VFP V + KD GG++ G G + G Sbjct: 128 RRN-ATDAKSIMKEPVYRAVFPHVSLIGFKGGKDTSNEFDVPAGGEFRGVGVGGPLTGFS 186 Query: 561 AHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEII 620 +DD ++ E A SA+ ++ ++ W+ + +RL L+ V LI T + DL + Sbjct: 187 IDVGIIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV- 245 Query: 621 KLNQEVLTGADRYHIVEAPALCYDPEN-----DVLGRALGEVLWDYYDLHYFKRKRSEWK 675 + + G + ++ PAL DP+ D+ AL L L +R SE+ Sbjct: 246 ---RRKMEGQPNFTLLSFPAL-NDPDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFW 301 Query: 676 YQRFALVYQQLADAASDTSIASKFQTYDHLPHLEPKVLKARLDAGHADERGRPIPDRKEH 735 + + +YQQ+ S+F HL+ HA D + Sbjct: 302 W---SAMYQQVP--------LSEFGAIFPREHLQ---------YYHAA-------DLPKQ 334 Query: 736 FRRVVVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRY 795 F RV++S D+ K G +D+ VWG+T + +LI R+K+ + I + +++ Sbjct: 335 FVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIADLKRKH 394 Query: 796 -EVDAILVEDKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAG 854 V + +E+ NG A I D ++ P +E VP SKE R + + + Sbjct: 395 AAVSRVYIEEAANGAALI------DMLKKHFPM-LEG--VPPLGSKEARAHAVAWVWSNN 445 Query: 855 EVFL--PGKAPWLDLLIREIGQFPE--GAHDDQVDAMTQYL 891 V L P + P + ++ EI FP+ HDD VD MT L Sbjct: 446 CVMLPHPDERPGIGPVVNEITSFPDTVTGHDDSVDGMTIAL 486 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 90.9 bits (224), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 115/461 (24%), Positives = 189/461 (40%), Gaps = 67/461 (14%) Query: 447 GVRPCRCLTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRD----PRQKIIGGGHSQRFV 502 G RP LT +H S+ SR + GR P +I ++ Sbjct: 77 GKRPVLMLTAPPQHG---------KSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLA 127 Query: 503 ENEFSGKIRNLVRTPQYRDVFPDVVIDHATSAKDMWA--IAGHGGQYAAKGAGQAIHGLR 560 + +++++ P YR VFP V + KD GG++ G G + G Sbjct: 128 RRN-ATDAKSIMKEPVYRAVFPHVSLIGFKGGKDTSNEFDVPAGGEFRGVGVGGPLTGFS 186 Query: 561 AHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEII 620 +DD ++ E A SA+ ++ ++ W+ + +RL L+ V LI T + DL + Sbjct: 187 IDVGIIDDATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV- 245 Query: 621 KLNQEVLTGADRYHIVEAPALCYDPEN-----DVLGRALGEVLWDYYDLHYFKRKRSEWK 675 + + G + ++ PAL DP+ D+ AL L L +R SE+ Sbjct: 246 ---RRKMEGQPNFTLLSFPAL-NDPDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFW 301 Query: 676 YQRFALVYQQLADAASDTSIASKFQTYDHLPHLEPKVLKARLDAGHADERGRPIPDRKEH 735 + + +YQQ+ S+F HL+ HA D + Sbjct: 302 W---SAMYQQVP--------LSEFGAIFPREHLQ---------YYHAA-------DLPKQ 334 Query: 736 FRRVVVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRY 795 F RV++S D+ K G +D+ VWG+T + +LI R+K+ + I + +++ Sbjct: 335 FVRVIMSCDATFKDGQASDFVFVGVWGKTADERVWLIDWRREKLAFMATAQAIADLKRKH 394 Query: 796 -EVDAILVEDKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAG 854 V + +E NG A I D ++ P +E VP SKE R + + + Sbjct: 395 AAVSRVYIEKAANGAALI------DMLKKHFPM-LEG--VPPLGSKEARAHAVAWVWSNN 445 Query: 855 EVFL--PGKAPWLDLLIREIGQFPE--GAHDDQVDAMTQYL 891 V L P + P + ++ EI FP+ HDD VD MT L Sbjct: 446 CVMLPHPDERPGIGPVVNEITSFPDTVTGHDDSVDGMTIAL 486 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 13/199 (6%) Query: 471 NSTYASRLFVAWRLGRDPRQKII--------GGGHSQR---FVENEFSGKIRNLVRTPQY 519 ST AS V L +P +II GHS++ ++ SG +R+ + Q Sbjct: 102 KSTMASVYTVLRALQLNPNARIILACYGQDLAHGHSRKCRDLIKRHGSG-VRDAMTGAQI 160 Query: 520 RDVFPDVVIDHATSAKDMWAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESA 579 D + ++ + W+I G G A G G I G A +DDPY+ + A+SA Sbjct: 161 EDKL-GLKLERGANKVSEWSIEGGSGGLVATGLGGTITGKPADLFIIDDPYKHMSEADSA 219 Query: 580 IEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAP 639 R K+ W +RL P A LI TR+H EDL G+++ E+ + + P Sbjct: 220 TYRAKVDLWMATVATTRLAPGAPTILIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIP 279 Query: 640 ALCYDPENDVLGRALGEVL 658 A+ + D L RA GE + Sbjct: 280 AIAEEGIKDALDRAPGEAM 298 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 81.6 bits (200), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 13/199 (6%) Query: 471 NSTYASRLFVAWRLGRDPRQKII--------GGGHSQR---FVENEFSGKIRNLVRTPQY 519 ST AS V L +P +II GHS++ ++ SG +R+ + Q Sbjct: 104 KSTMASVYTVLRALQLNPNARIILACYGQDLAHGHSRKCRDLIKRHGSG-VRDAMTGAQI 162 Query: 520 RDVFPDVVIDHATSAKDMWAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESA 579 D + ++ + W+I G G A G G I G A +DDPY+ + A+SA Sbjct: 163 EDKL-GLKLERGANKVSEWSIEGGTGGLVATGLGGTITGKPADLFIIDDPYKHMSEADSA 221 Query: 580 IEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAP 639 R K+ W +RL P A LI TR+H EDL G+++ E+ + + P Sbjct: 222 TYRAKVDLWMATVATTRLAPGAPTILIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIP 281 Query: 640 ALCYDPENDVLGRALGEVL 658 A+ + D L RA GE + Sbjct: 282 AIAEEGIKDALDRAPGEAM 300 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 81.6 bits (200), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 68/133 (51%) Query: 538 WAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRL 597 W++AG G A G G + G+ A + +DDP++++ A+SA+ R+++ WF +RL Sbjct: 196 WSVAGGRGGLVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRL 255 Query: 598 LPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVLGRALGEV 657 P A + +I TR+H EDL G++I + + + ++ PA+ D L R G Sbjct: 256 APDASIIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTP 315 Query: 658 LWDYYDLHYFKRK 670 + D KR Sbjct: 316 MVSARDTPEAKRN 328 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 81.6 bits (200), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 68/133 (51%) Query: 538 WAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRL 597 W++AG G A G G + G+ A + +DDP++++ A+SA+ R+++ WF +RL Sbjct: 196 WSVAGGRGGLVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRL 255 Query: 598 LPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVLGRALGEV 657 P A + +I TR+H EDL G++I + + + ++ PA+ D L R G Sbjct: 256 APDASIIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTP 315 Query: 658 LWDYYDLHYFKRK 670 + D KR Sbjct: 316 MVSARDTPEAKRN 328 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 72.0 bits (175), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 57/414 (13%) Query: 507 SGKIRNLVRTPQYRDVFPDVVIDHATSAKDMWAIAGHGGQY----AAKGAGQAIHGLRAH 562 S ++R+L+++ ++++++P T D + G+ +K + G R Sbjct: 111 SKRVRDLIKSKEFQELWP---CSFGTCRDDEIQVLDENGKVRFESISKAMAGQVTGSRGG 167 Query: 563 FV------CV--DDPYRSIEVAESAIEREKIKTWFFGDVGSRLLPLAK-----VFLIMTR 609 ++ C+ DDP + + A S + RE + + SR K + + R Sbjct: 168 YMTDDYSGCIMLDDPLKP-DDALSNVRREAVNMLLKNTIRSRRASSVKGKETPIIAVQQR 226 Query: 610 FHEEDLTGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVLGRALGEVLWDYYDLHYFKR 669 H D T ++ Q + ++ +V+ PA+ + D L + + D F Sbjct: 227 LHVLD-TSHFMESGQMGI----KFDVVKVPAIVTEDYADTLPDWIKQQFIDDVLSSPFV- 280 Query: 670 KRSEWKYQRFALVYQQLAD--AASDTSIASKFQTYDHLPHLEPKVLKARLDAGHADERGR 727 +R KY + + + D A D + Y EP L L +R Sbjct: 281 ERDGVKYYSYFPAKESIEDLMAMRDADPYTFLSQYAQ----EPVALGGNLINVDWFQRLS 336 Query: 728 PI--PDRKEHFRRVVVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLT 785 P K +R ++ D+A + +D+SV Q+WG A K YLI Q R K + L Sbjct: 337 DTFRPPAKYDYR--FITCDTAMTTKSYSDFSVLQLWGYKDA-KIYLIDQRRGKWEAPELE 393 Query: 786 EMIERVAKRYEVDA--------ILVEDKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPST 837 + K+ + I++E K +G IQ+ G R+ PIE VP Sbjct: 394 AELLDFEKKSRSTSQSDGILRKIIIEKKASGIGLIQSAG------RVMRTPIEPY-VPDN 446 Query: 838 YSKEFRFNEIVPMIEAGEVFLPGKAPWLDLLIREIGQFPEG---AHDDQVDAMT 888 K R +P I+AG V LP APWL L+ EI F HDDQ+D +T Sbjct: 447 -DKLTRVMSALPQIKAGNVVLPESAPWLSGLLTEIAAFTADDSHKHDDQIDCLT 499 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 479 FVAWRLGRDPRQKIIGGGHSQRFVENEFSGKIRNLVRTPQ-------YRDVFPDVVIDHA 531 FV W LG D +KI+ G +++ + FS +RN ++ + Y D+F D I + Sbjct: 12 FVEWVLGNDHTKKIMTGSYNET-LSTVFSKNVRNTLQEEKADENKIVYSDIF-DAAIKYG 69 Query: 532 TSAKDMWAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFG 591 +AK++W+++ Y A G A + +DD ++ E A +A EK WF Sbjct: 70 DAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVN 129 Query: 592 DVGSRLLPLAKVFLIMTRFHEEDLTGEIIK 621 + SRL K+ + MTR+H EDL G ++ Sbjct: 130 TMLSRLESGGKIIINMTRWHSEDLAGRALR 159 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 479 FVAWRLGRDPRQKIIGGGHSQRFVENEFSGKIRNLVRTPQ-------YRDVFPDVVIDHA 531 FV W LG D +KI+ G +++ + FS +RN ++ + Y D+F D I + Sbjct: 72 FVEWVLGNDHTKKIMTGSYNET-LSTVFSKNVRNTLQEEKADENKIVYSDIF-DAAIKYG 129 Query: 532 TSAKDMWAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFG 591 +AK++W+++ Y A G A + +DD ++ E A +A EK WF Sbjct: 130 DAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVN 189 Query: 592 DVGSRLLPLAKVFLIMTRFHEEDLTGEIIK 621 + SRL K+ + MTR+H EDL G ++ Sbjct: 190 TMLSRLESGGKIIINMTRWHSEDLAGRALR 219 Score = 32.3 bits (72), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 78 LAKHDFNAFCEYVNPEEAPASKWHVYLTSLLQEIE---NNHELERFVLNCPPGHAKPL 132 L+K F +C + P + YL ++ +E + N++E + VLN PP H K L Sbjct: 12 LSKRFFFDYCNLIMPSFYKRDR--AYLVTMCEEFQSFLNDNEHDVLVLNLPPRHGKSL 67 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 68.2 bits (165), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 479 FVAWRLGRDPRQKIIGGGHSQRFVENEFSGKIRNLVRTPQ-------YRDVFPDVVIDHA 531 FV W LG D +KI+ G +++ + FS +RN ++ + Y D+F D I Sbjct: 72 FVEWVLGNDHTKKIMTGSYNE-ILSTVFSKNVRNTIQQNKADVDKIVYSDIF-DSKIKDG 129 Query: 532 TSAKDMWAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFG 591 +AK++W+++ Y A G A + +DD ++ E A +A EK WF Sbjct: 130 DAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVN 189 Query: 592 DVGSRLLPLAKVFLIMTRFHEEDLTGEIIK 621 + SRL K+ + MTR+H EDL G ++ Sbjct: 190 TMLSRLESGGKIIINMTRWHSEDLAGRALR 219 Score = 31.6 bits (70), Expect = 0.041, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 78 LAKHDFNAFCEYVNPEEAPASKWHVYLTSLLQEIE---NNHELERFVLNCPPGHAKPL 132 L+K F +C + P + YL ++ +E + N+ E + VLN PP H K L Sbjct: 12 LSKRFFFDYCNLIMPSFYKRDR--AYLVTMCEEFQSFLNDDEHDVLVLNLPPRHGKSL 67 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 90/390 (23%), Positives = 157/390 (40%), Gaps = 50/390 (12%) Query: 511 RNLVRTPQYRDVFPDVVIDHATSAKDMWAIAGHG-GQYAAKGAGQAIHGLRAHFVCVDDP 569 R+++ P YR++FP + ++ + H G A+G G ++ G DD Sbjct: 110 RSIMCEPIYREIFPHASMLTFKGGRNTYDYFDHPYGFIKAQGVGGSLTGFSIDVGLNDDL 169 Query: 570 YRSIEVAESAIEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTG 629 + A S ++ + W+ +RL + + T + D+ I K+++ G Sbjct: 170 TADAQDALSQTVQDGHQDWYATVFTTRLQQRSGQINMGTPWSANDIMARIKKVHE----G 225 Query: 630 ADRYHIVEAPALCYDPE----NDVLGRALGEVLWDYYDLHYFKRKRSE-WKYQRFALVYQ 684 Y + PAL Y E D+ AL L L K SE W +A +YQ Sbjct: 226 KPNYRRLSYPALNYPGEIGYDPDLREGALVPELHSEEKLREIKASMSEAW----WAAMYQ 281 Query: 685 QLADAASDTSIASKFQTYDHLPHLEPKVLKARLDAGHADERGRPIPDRKEHFRRVVVSVD 744 Q A + + + F G R + F +V+++VD Sbjct: 282 Q----APMSEMGAIF--------------------GKGGVRYYRQGELPTAFAQVIMTVD 317 Query: 745 SANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRY-EVDAILVE 803 ++ K +D+ VW +T + +L+ R+K+ T + I + Y + I +E Sbjct: 318 ASFKGKETSDFCAIGVWAKTSDNRVWLLAMRREKLAFTATAQAIVDLKAAYPQCTRIYIE 377 Query: 804 DKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAGEVFL--PGK 861 D NG A I+ L+ + VP+ SKE R++ + + ++G+V L P Sbjct: 378 DAANGPALIEM---------LSRHVQGIVGVPALGSKESRWHAVAGVWQSGQVMLPHPDD 428 Query: 862 APWLDLLIREIGQFPEGAHDDQVDAMTQYL 891 P + ++ EI P+ +DD VD M L Sbjct: 429 VPSIVPVVAEIVAAPDVRNDDAVDCMAMAL 458 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 8/179 (4%) Query: 556 IHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRLLPLAKVFLIMTRFHEEDL 615 I G+ A + +DDP++++ A+SA R ++ WF +RL P A + LI TR+H EDL Sbjct: 211 ITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDL 270 Query: 616 TGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVLGRALGEVLWDYYDLHYFKRKRSEWK 675 G+++ + + + + PA+ + D L R G + D KR ++ + Sbjct: 271 AGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTR 330 Query: 676 YQRFALVYQQLADAASDTSIASKFQTYDHLPHL-EPKVLKAR-------LDAGHADERG 726 Q + L + FQ P L +P A D+G DE G Sbjct: 331 KQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLPQPPTYPAASVVGIDPADSGEGDETG 389 >gi|7243|lcl|protein:vir:103223 Length: 168 # NCBI annotation: putative phage relative terminase # Family: family:all:144 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277476;genbank:gi:71834119;genbank:GeneID :3562334 Length = 168 Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 20/150 (13%) Query: 753 NDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMI------ERVAKRYE--VDAILVED 804 +DYSV Q+WG R YL+ R K + L + + R A + + + +++E Sbjct: 7 SDYSVFQLWGRKDNR-LYLLDMVRGKWEAPELEQTLLDFESKHRAASKTDGILRKVIIEK 65 Query: 805 KGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAGEVFLPGKAPW 864 K +G IQ+ G R+ PIE VP T K R +P I+AG V LP APW Sbjct: 66 KASGIGLIQSAG------RVMRTPIEPF-VPDT-DKLTRVMSALPQIKAGNVVLPDSAPW 117 Query: 865 LDLLIREIGQFPEG---AHDDQVDAMTQYL 891 L L+ E F HDD VD T + Sbjct: 118 LTSLLTEFSAFTADDSHPHDDIVDTTTMAI 147 >gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285519;genbank:gi:148734502;genbank:Ge neID:5220006 Length = 523 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 150/391 (38%), Gaps = 71/391 (18%) Query: 507 SGKIRNLVRTPQYRDVFPDVVIDHATSAKDMWAIAGHGG----QYAAKGAGQAIHGLRAH 562 S ++R+LV + ++++++P TS D + I G + +K G I G R Sbjct: 108 SKRVRDLVNSREWQELYP---AKTGTSKDDEFQILNDAGKVRLEMISKSMGGQITGSRGG 164 Query: 563 FV-------CV--DDPYRSIEVAESAIEREKIKTWFFGDVGSRLL-PLAKVFLIMTRFHE 612 ++ CV DDP + ++ S ++RE+ + + SR + +I R H Sbjct: 165 YITPGVYSGCVTLDDPEKPDDMF-SKVKRERGQMIAKNTIRSRRAHSETPIIVIQQRLHA 223 Query: 613 EDLTGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVLGRALGEVLWDYYDLHYFKRK-R 671 +D+T ++ + + + PA+ + G+ L D+ H+ K Sbjct: 224 QDMTWFLMNGGMGI-----EFDQISIPAM--------VTEEYGKSLPDWLQPHFEKDVLS 270 Query: 672 SEW------KYQRFALVYQQLAD--AASDTSIASKFQTYDHLPHLEPKVLKARLDA---- 719 SE+ KY F + + D A D + + Y EP L Sbjct: 271 SEYIVIDGVKYYSFWPSKESIHDLKALRDADLYTFLSQYQQ----EPIALGGNAINVGWF 326 Query: 720 ---GHADERGRPIPDRKEHFRRVVVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQER 776 G ++ P PDR F ++ D+A K G NDYSV WG R Y I R Sbjct: 327 QYYGTGEKSTMPKPDR---FDYTFITADTAQKEGELNDYSVLCYWGMFKGRI-YFIDGVR 382 Query: 777 KKVDITGLTEMIERVAKRY--------EVDAILVEDKGNGTAYIQARGQTDSQRRLAPAP 828 K + L + K+ + I VEDK +GT IQ + P Sbjct: 383 GKWEAPMLETQFKAFVKQCWNRNKECGNLRKIYVEDKASGTGLIQNCRKA--------FP 434 Query: 829 IEAIQVPSTYSKEFRFNEIVPMIEAGEVFLP 859 IE V K R + P+I+ G V LP Sbjct: 435 IEITPVQRDKDKVTRCMDAQPVIKNGYVVLP 465 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 53.5 bits (127), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%) Query: 538 WAIAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESAIEREKIKTWFFGDVGSRL 597 W I G G A G G AI G A +DDP++++ A+S REK+ WF +RL Sbjct: 166 WRIDGAIGGMVAAGLGSAITGKSADLFIIDDPFKNMIEADSTRHREKVNEWFASVASTRL 225 Query: 598 LPLAKVFLI 606 P A + LI Sbjct: 226 SPEASMILI 234 Score = 32.3 bits (72), Expect = 0.023, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 20/118 (16%) Query: 540 IAGHGGQYAAKGAGQAIHGLRAHFVCVDDPYRSIEVAESA----IEREKIKTWFFGDVGS 595 AG A +G+ HG FV V P SIE A A I+ E+ + + + S Sbjct: 432 CAGCSAMTATSSSGE--HGPLNDFVAV--PIISIEPAGRAEVFDIQVERTENFIANGLVS 487 Query: 596 RLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADR-YHIVEAPALCYDPENDVLGR 652 TR+H EDL+G II +++L DR + + PA+ + D LGR Sbjct: 488 H----------NTRWHPEDLSGTIIA-GEKLLDAEDRTWRHINVPAVSEEGIPDALGR 534 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 443 IEPHGVRPCRCLTVEDEHTFIAEGVVVHNSTY 474 IEP G + VE FIA G+V HN+ + Sbjct: 461 IEPAGRAEVFDIQVERTENFIANGLVSHNTRW 492 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 68/156 (43%), Gaps = 20/156 (12%) Query: 741 VSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVD-------ITGLTEMIERVAK 793 ++ D+A K G NDY+V +WG+ + K Y I R K + T R K Sbjct: 352 ITADTAQKTGELNDYTVFCLWGKKND-KVYFIDGIRGKWEAPDMERQFTAFVNQAWRHNK 410 Query: 794 RYEV-DAILVEDKGNGTAYIQARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIE 852 V I VEDK +GT IQ + R+ P I +Q K R + P+I+ Sbjct: 411 SMGVLRKIYVEDKASGTGLIQ------NLRKKTPISITPLQ--RNKDKVTRAMDAQPVIK 462 Query: 853 AGEVFLPGKAPWLDLLIREIGQFP---EGAHDDQVD 885 AG V LP + P L +I E F HDD VD Sbjct: 463 AGRVVLPEEHPMLAEIIAEHSAFTYDDTHPHDDIVD 498 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 49.7 bits (117), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 128 HAKPLDVDTEVLMADGSWKRLGDITVGEYVVGESGARCKVTAVHEQGELATLKITTAHGR 187 + K LDV+T +L +G WK++GDI VG+YV G +V+ V E+ + A G Sbjct: 90 NGKALDVETPILTGNG-WKKMGDIQVGDYVHAADGTLARVSYVSERHWRDCFSVQFADGA 148 Query: 188 QIIAAPDHAFRVGNTWK 204 +++A+ H + V + K Sbjct: 149 ELVASDHHLWAVNDRLK 165 >gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: putative ATP-dependent DNA helicase # Family: family:all:1546 # MgeID: mge:1500 # MgeName: phiEL # Cross-refs: genbank:acc:YP_418044;genbank:gi:82700944;goa:Q2Z170;int erpro:IPR000871;uniprot:Q2Z170;genbank:GeneID:5176636 Length = 1088 Score = 42.0 bits (97), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 144 SWKRLGDITVGEYVVGESGARCKVTAVHEQGELATLKITTAHGRQIIAAPDHAFRVGNTW 203 +WKR+ + VG+ V+ SG C+V +H QG+ ++ T+ GR +H + T Sbjct: 205 TWKRIEHLRVGDQVLDRSGKPCQVIGIHPQGKRRLYRVITSDGRATDVGTEHLW----TL 260 Query: 204 KEAGKLRPGDAL 215 K+ G AL Sbjct: 261 KDYSNCLNGRAL 272 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 38.9 bits (89), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 130 KPLDVDTEVLMADGSWKRLGDITVGEYVVGESGARCKV---TAVHEQGELATLKITTAHG 186 +PL ++TEV G W +GD++VG+YV+G G +V T V E LAT + G Sbjct: 140 QPLALNTEVPTPSG-WTTVGDLSVGDYVLGSDGQPHRVQRETPVLEG--LATYVVRFDDG 196 Query: 187 RQIIAAPDHAF 197 +I A+ H + Sbjct: 197 TEITASASHGW 207 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 33.9 bits (76), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 19/179 (10%) Query: 451 CRCLTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRDPRQKIIGGGHSQRFVENEFSGKI 510 RCL D FI + ++ + FV W L RDP+ KI+ S+ + S I Sbjct: 44 ARCLANGDNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADAN-SIFI 102 Query: 511 RNLVR-TPQYRDVFP-----DVVIDHATSAKDMWAIAGHGGQYAAKGAGQAIHGLRAHFV 564 +N++ P ++ P D VI A H + G + G RA + Sbjct: 103 KNIIDLLPFLAELKPRPGQRDSVISFDVGP----AKPDHSPSVKSVGITGQLTGSRADII 158 Query: 565 CVDDPYRSIEV-AESAIEREKIKTWFFGDVGSRL---LPLAKVFLIMTRFHEEDLTGEI 619 DD +E+ + SA + + K W + L LP ++V + T E L E+ Sbjct: 159 IADD----VEIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKEL 213 >gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: putative large terminase subunit # Family: family:all:144 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071818;genbank:gi:11863101;genbank:GeneID :1257603 Length = 467 Score = 33.1 bits (74), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 26/154 (16%) Query: 744 DSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRYEVDAILVE 803 D +N P DY+V + G +Y++ +R + + + R A+ + I+ + Sbjct: 303 DGSNDP----DYTVGLLMGVDQDDYYYVLDIQRFRGSPGEVKARVLRTAEEDGREVIIAK 358 Query: 804 DKGNG------TAYIQA--RGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIVPMIEAGE 855 ++ G T Y+++ +G T R+ S+Y++ FR + Sbjct: 359 EEEPGSSGKIVTDYLRSLLQGYTLRADRVTGDKTTRALPVSSYAESFRIKVL-------- 410 Query: 856 VFLPGKAPWLDLLIREIGQFP-EGAHDDQVDAMT 888 +A W + E+ FP EG HDDQVDA + Sbjct: 411 -----RASWTQAFLDELEAFPSEGVHDDQVDAFS 439 >gi|15217|lcl|protein:vir:2600 Length: 353 # NCBI annotation: gp4 # Family: family:all:543 # MgeID: mge:55 # MgeName: SIO1 # Cross-refs: genbank:acc:NP_064742;genbank:gi:9964611;genbank:GeneID: 1263055 Length = 353 Score = 32.3 bits (72), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 40/198 (20%) Query: 601 AKVFLIMTRFHEEDLTGEIIKLNQEV------LTGADRYHIVEAPALCYDPENDVLGRAL 654 A+ +++ TR+H +DL +++ + +++ L G + + V A+ E++ G Sbjct: 41 AQEWVVGTRYHPKDLYSDLMGMEEDIYSKEGELVGKENIYEVMEKAV----EDN--GDGT 94 Query: 655 GEVLWDY----------YDLHYFKRKRSEW--KYQRFALVYQQLADAASDTSIASKFQTY 702 GE LW +D+ +KR ++ + Q A Y D S KFQ Y Sbjct: 95 GEFLWPRQLRKDGKFFGFDVQILAKKRGQYLDRVQFRAQYYNDPTDPDSQPIAYEKFQYY 154 Query: 703 DHLPHLEPKVLKARLDAGHADERGRPIPDRKEHFRRVVVSVDSANKPGARNDYSVAQVWG 762 D HL D G +G+ + V +VD A R DY+ V G Sbjct: 155 DK-KHLTR-------DGGQWFYKGQKL--------NVSAAVDFAYSVSKRADYTAIVVIG 198 Query: 763 ETHARKHYLIYQERKKVD 780 Y++ +R K D Sbjct: 199 VDSENNVYVLDIDRFKTD 216 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 32.3 bits (72), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 12/147 (8%) Query: 744 DSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRYEVDAILVE 803 D AN P DY+V + G +Y++ R + + + R A+ + I+ + Sbjct: 303 DGANDP----DYTVGLLLGVDKEDYYYVLDVRRFRESPGKVKSKVLRTAEEDGREVIIAK 358 Query: 804 DKGNGTAYIQARGQTDSQRRLAPA-PIEAIQVPSTYSKEFRFNEIVPMIEAGEVFLPGKA 862 ++ G++ + TD R L A +V T K R + E+G + + +A Sbjct: 359 EEEPGSS---GKIVTDYLRSLLQGYTFRADRV--TGDKVTRALPVSSYAESGRIKVL-RA 412 Query: 863 PWLDLLIREIGQFP-EGAHDDQVDAMT 888 W + E+ FP EG HDDQVDA + Sbjct: 413 SWTRAFLDELEAFPMEGVHDDQVDAFS 439 >gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp68 # Family: family:all:543 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950546;genbank:gi:119952237;genbank:GeneI D:5075700 Length = 530 Score = 31.6 bits (70), Expect = 0.040, Method: Compositional matrix adjust. Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 741 VSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRYEVDAI 800 ++ D A +DYSV VW + + + + + + R+ + Y+ + Sbjct: 331 ITTDFATSEKQVSDYSVISVWAYGSNGDWFWVDGIACRQTMDKNFDDLFRLVQEYQPQQV 390 Query: 801 LVEDKGNGTAYIQARGQTDSQRRL----APAPIEAIQVPSTYSKEFRFNEIVPMIEAGEV 856 VE G +I + R + A + + SK RFN +VP +AG++ Sbjct: 391 GVETTGQQGGFISLLQKEMLNRNVFFNFASSRGGQPGIHPVTSKLSRFNLVVPWFKAGKM 450 Query: 857 FLPGK---APWLDLLIREI 872 + P + +P + L + +I Sbjct: 451 YFPAEMKDSPIMTLFMGQI 469 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%) Query: 423 DDKRVAFPTSPSLLADTVTWIEPHGVRPCRC-------LTVEDEHTFIAEGVVVHNSTYA 475 D +R+ + +L V W + P RC L DE FI + ++ Sbjct: 8 DQRRLLAMKNDFVLFLMVLWRALNLPEPTRCQKDMARKLAAGDERRFILQAFRGIGKSFI 67 Query: 476 SRLFVAWRLGRDPRQKII 493 + FV W+L +P+ K + Sbjct: 68 TCAFVVWKLWNNPQLKFM 85 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 28.5 bits (62), Expect = 0.38, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 26/197 (13%) Query: 440 VTWIEPHGVRPCRC-------LTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRDPRQKI 492 V W + P +C L D FI + ++ + FV W L RDP+ KI Sbjct: 25 VLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKI 84 Query: 493 IGGGHSQRFVENEFSGKIRNLVR-TPQYRDVFP-----DVVIDHATSAKDMWAIAGHGGQ 546 + S+ + S I+N++ P ++ P D VI A H Sbjct: 85 LIVSASKERADAN-SIFIKNIIDLLPFLAELKPRPGQRDSVISFDVGP----AKPDHSPS 139 Query: 547 YAAKGAGQAIHGLRAHFVCVDDPYRSIEV-AESAIEREKIKTWFFGDVGSRL---LPLAK 602 + G + G RA + DD +E+ + SA + + K W + L LP ++ Sbjct: 140 VKSVGITGQLTGSRADIIIADD----VEIPSNSATQGAREKLWTLVQEFAALLKPLPTSR 195 Query: 603 VFLIMTRFHEEDLTGEI 619 V + T E L E+ Sbjct: 196 VIYLGTPQTEMTLYKEL 212 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 27.7 bits (60), Expect = 0.56, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 472 STYASRLFVAWRLGRDPRQKIIGGGHSQRF 501 ST S L+V WR+ R+P +++ G + +R Sbjct: 70 STVCSVLYVLWRIYRNPDIRVLVGTNLKRL 99 Score = 25.4 bits (54), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 9/151 (5%) Query: 740 VVSVDSANKPGARNDYSVAQVWGETHARKHYLIYQERKKVDITGLTEMIERVAKRYEVDA 799 ++ VD A D +V V G + + Y+ + K + + I +A +Y+++A Sbjct: 388 MLVVDPAVSQKKTADNTVLTVGGYDNDKNLYIFDVKAGKFTPSETIKHIFTLADKYKLNA 447 Query: 800 ILVEDKGNGTAYI--QARGQTDSQRRLAPAPIEAIQVPSTYSKEFRFNEIV-PMIEAGEV 856 + +E G G A + Q + + R P+ + K+ R ++ P + Sbjct: 448 VTLETVG-GFALLSYQVKDAFKTHR-----PLAIREYRPKGDKQGRITAMLEPHWTNKSI 501 Query: 857 FLPGKAPWLDLLIREIGQFPEGAHDDQVDAM 887 ++ + L E+ FP HDD VD Sbjct: 502 YMQSYLAIMPELKDELDSFPLSKHDDVVDTF 532 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 27.7 bits (60), Expect = 0.57, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 440 VTWIEPHGVRPCRC-------LTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRDPRQKI 492 V W + +P +C L D FI + ++ + FV W L RDP+ K+ Sbjct: 25 VLWKALNLPKPTKCQIDMARTLADGDHKKFILQAFRGIGKSFITCAFVVWVLWRDPQLKV 84 Query: 493 I 493 + Sbjct: 85 L 85 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 27.7 bits (60), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 440 VTWIEPHGVRPCRC-------LTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRDPRQKI 492 V W + P +C L D FI + ++ + FV W L RDP+ KI Sbjct: 25 VLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLWRDPQLKI 84 Query: 493 I 493 + Sbjct: 85 L 85 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 27.7 bits (60), Expect = 0.61, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 440 VTWIEPHGVRPCRC-------LTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRDPRQKI 492 V W + P +C L D FI + ++ + FV W L RDP+ KI Sbjct: 25 VLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLWRDPQLKI 84 Query: 493 I 493 + Sbjct: 85 L 85 >gi|15780|lcl|protein:vir:6245 Length: 327 # NCBI annotation: gp39 # Family: family:all:11659 # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813699;swissprot:trembl:q859b8;genbank:gi :29366759;uniprot:Q859B8;genbank:GeneID:1258900 Length = 327 Score = 27.3 bits (59), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 248 SYFHRVHKSGPKTYRNVFLWTSDHREASKISACLKRLGIAFKGRLAKHEQVWKMRLATEW 307 S F +V + R L TSD EA SA + R G KH K +ATEW Sbjct: 82 SAFDKVTVTDTAGVRTTVLETSDVSEAPSFSAQMVRPGTDGTKAAYKH----KGCVATEW 137 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 27.3 bits (59), Expect = 0.74, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 440 VTWIEPHGVRPCRC-------LTVEDEHTFIAEGVVVHNSTYASRLFVAWRLGRDPRQK- 491 V W + +P +C L+ DE FI + ++ + FV W+L +P K Sbjct: 24 VLWRALNLPKPTKCQIDMAKKLSAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPDLKF 83 Query: 492 -IIGGGHSQRFVENEFSGKIRNLVRTPQYRDVFPDVVIDHATSAKDMW-AIAGHGGQYAA 549 I+ + + F +I +L+ P ++ P ++ A D+ A H + Sbjct: 84 MIVSASKERADANSVFIKRIIDLL--PFLHELKPGPGQRDSSLAFDVGPAKPDHSPSVKS 141 Query: 550 KGAGQAIHGLRAHFVCVDD 568 G + G RA + DD Sbjct: 142 VGITGQLTGSRADILIADD 160 >gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: gp242 # Family: family:all:11526 # MgeID: mge:1550 # MgeName: Catera # Cross-refs: genbank:acc:YP_656220;genbank:gi:109393421;genbank:GeneI D:4156748 Length = 1007 Score = 27.3 bits (59), Expect = 0.84, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 30/127 (23%) Query: 132 LDVDTEVLMADGSWKRLGDITVG-------EYVVGESGA----RCKVTAVHEQGELATLK 180 L DT VL D W +G + G E++ G G+ R + ++ + + Sbjct: 290 LAPDTRVLTEDLRWVPVGSVRAGDRLVGFDEHIPGGKGSYRAWRQSIVLSAQEIQAPRYE 349 Query: 181 ITTAHGRQIIAAPDHAF---------RVGN----------TWKEAGKLRPGDALSVVGAA 221 I T G++I++ H + R N W +LRPGD + +G Sbjct: 350 IVTESGKRIVSTGAHTWLSRKPAAKGRGKNRGSGALTPILRWWRTDELRPGDEIKTMGVD 409 Query: 222 NLNYDAS 228 D S Sbjct: 410 PWETDES 416 >gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529553;genbank:gi:90592639;genbank:GeneID :3974490 Length = 322 Score = 27.3 bits (59), Expect = 0.89, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 37/168 (22%) Query: 595 SRLLPLAKVFLIMTRFHEEDLTGEIIKLNQEVLTGADRYHIVEAPALCYDPENDVLGRAL 654 SRL K+ +IMTR+ +DL G ++ +E G HI AL D G L Sbjct: 3 SRLEEGGKIIIIMTRWSSKDLAGRALEHYKE--EGKKVRHI-NMKALQED------GNML 53 Query: 655 GEVLWDYYDLHYFKRKRSEWKYQRFALVYQQLADAASDTSIASKFQTYDHLPHLEPKVLK 714 E + L+ +K K + YQQ + ++F+TYD LP Sbjct: 54 CE---EVLSLNSYKSKVRAMGEDIASANYQQ-EPIDLKGCLYTRFKTYDKLP-------- 101 Query: 715 ARLDAGHADERGRPIPDRKEHFRRVVVSVDSANKPGARNDYSVAQVWG 762 DE+G + F + VD+A++ GA DY + V+G Sbjct: 102 -------VDEKGNLL------FTSIKAYVDTADE-GA--DYLCSIVYG 133 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 25.8 bits (55), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 822 RRLAPAPIEAIQVPSTYSKEFRF-NEIVPMIEAGEVFLPGKAPWLDLLIREIGQFPEGAH 880 +RL I +I++ +T + + + N ++ G + LP + W L+ E+G + A+ Sbjct: 458 QRLHAHGIRSIEMSTTNTAQLSYYNLTRQLLNEGRLILPRDSTWTHSLMAEMGGILQLAN 517 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 25.4 bits (54), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 16/119 (13%) Query: 782 TGLTEMIERVAKRYEVDAILVEDKGNGTAY-----------IQARGQTDSQRRLAPA--P 828 TG+ +++E ++ D I+ + AY Q +T+ +R A A P Sbjct: 392 TGVLDVVEAAIRKRLPDKIIEDIIAMQRAYHCLVWGVEAVQFQEFLRTELVKRSAKAGCP 451 Query: 829 IEAIQVPSTYSKEFRFNEIVPMIEAGEVFLPGKAPWLDLLIREIGQFPEGAHDDQVDAM 887 + A + K R + P + G + L P +L +++ FP HDD DA+ Sbjct: 452 VPARAITPHADKLLRIESLQPHMANGLIRL---HPSQTVLEQQLRHFPAADHDDGPDAL 507 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 25.0 bits (53), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Query: 825 APAPIEAIQVPSTYSKEFRFNEIVPMIEAGEVFLPGKAPWLDLLIREIGQFPEGAHDDQV 884 A P+ A + K R + P + G + L P +L +++ FP HDD Sbjct: 448 AGCPVPARAITPHADKLLRIESLQPHMANGLIRL---HPSQTVLEQQLRHFPAADHDDGP 504 Query: 885 DAM 887 DA+ Sbjct: 505 DAL 507 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 24.3 bits (51), Expect = 6.8, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 459 EHTFIAEGVVVHNSTYASRLFVA 481 E +F A+ VH+STY + F++ Sbjct: 185 ESSFQADNTFVHHSTYLNNPFIS 207 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 24.3 bits (51), Expect = 6.9, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 459 EHTFIAEGVVVHNSTYASRLFVA 481 E +F A+ VH+STY + F++ Sbjct: 185 ESSFQADNTFVHHSTYLNNPFIS 207 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 23.9 bits (50), Expect = 8.6, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 459 EHTFIAEGVVVHNSTYASRLFVA 481 E +F A+ VH+STY + F++ Sbjct: 185 ESSFQADNTYVHHSTYLNNPFIS 207 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 23.9 bits (50), Expect = 8.6, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 459 EHTFIAEGVVVHNSTYASRLFVA 481 E +F A+ VH+STY + F++ Sbjct: 185 ESSFQADNTYVHHSTYLNNPFIS 207 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 23.9 bits (50), Expect = 8.6, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 459 EHTFIAEGVVVHNSTYASRLFVA 481 E +F A+ VH+STY + F++ Sbjct: 185 ESSFQADNTYVHHSTYLNNPFIS 207 >gi|12907|lcl|protein:vir:80398 Length: 431 # NCBI annotation: BcepGomrgp12 # Family: family:all:7264 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210232;genbank:gi:146329924;genbank:Ge neID:5123507 Length = 431 Score = 23.9 bits (50), Expect = 8.6, Method: Compositional matrix adjust. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 424 DKRVAFPTSPSLLADTVTWIEPHGVRPCRCLTVEDEHTFIAEGVVVHNST 473 D+R A P L T ++P+G+ + T+ + E + V + T Sbjct: 95 DERTAASAGPVTLTGATTTVDPNGLVTLKSTTITANYFLPGEWLYVGSDT 144 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 23.9 bits (50), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 748 KPGARNDYSVAQVWGETHARKHYLIYQERKK---VDITGLTEMIERVAKRYEVDAILVED 804 K + D +W + K +LI E + VD+ + IE + K YE++ I V Sbjct: 403 KEKMKTDNVPYNIW--SSKEKGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSY 460 Query: 805 KGNGTAYI 812 +G A + Sbjct: 461 DPHGAAML 468 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.136 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 417,753 Number of Sequences: 514 Number of extensions: 19622 Number of successful extensions: 142 Number of sequences better than 100.0: 49 Number of HSP's better than 100.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 64 length of query: 910 length of database: 206,069 effective HSP length: 80 effective length of query: 830 effective length of database: 164,949 effective search space: 136907670 effective search space used: 136907670 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)