BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_018863.1_cdsid_YP_006908487.1 [gene=BCB4_0258] [protein=structural protein] [protein_id=YP_006908487.1] [location=complement(147688..148116)] (142 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|25129|lcl|protein:vir:80710 Length: 140 # NCBI annotation: st... 201 3e-54 gi|24940|lcl|protein:vir:80620 Length: 140 # NCBI annotation: gp... 199 1e-53 gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hyp... 187 6e-50 gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: OR... 187 6e-50 gi|21558|lcl|protein:vir:63764 Length: 123 # NCBI annotation: gp... 175 2e-46 gi|24314|lcl|protein:vir:100800 Length: 155 # NCBI annotation: h... 174 4e-46 gi|23709|lcl|protein:vir:96672 Length: 121 # NCBI annotation: OR... 171 2e-45 gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: pu... 21 6.1 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 21 7.0 gi|5997|lcl|protein:vir:95545 Length: 195 # NCBI annotation: hyp... 20 9.3 >gi|25129|lcl|protein:vir:80710 Length: 140 # NCBI annotation: structural protein # Family: family:all:2792 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504133;genbank:gi:158079320;genbank:Ge neID:5666358 Length = 140 Score = 201 bits (511), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 91/140 (65%), Positives = 115/140 (82%) Query: 1 MASLANQTVQSANTVYFMIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGS 60 MAS+ NQTV + NTVY MI N I RAQS S ER +GTQG+Y+IGSIMPQEHVYL+YEG+ Sbjct: 1 MASVGNQTVHTGNTVYLMIGNKIIGRAQSASGERQYGTQGIYEIGSIMPQEHVYLKYEGT 60 Query: 61 VTVERFRMKKENLASLGFAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSYNESVN 120 +T+ER RMKKE+LASLG ALGE++LQ DI+DIV+ DNLT+E+V+AYRGCS SY+ES Sbjct: 61 ITLERMRMKKEDLASLGITALGEDILQRDIIDIVMMDNLTKEIVVAYRGCSAISYSESFT 120 Query: 121 VGEISSETARFYFLTSANVR 140 E++SE+ +F +LTSA V+ Sbjct: 121 ANEVTSESTQFTYLTSAKVK 140 >gi|24940|lcl|protein:vir:80620 Length: 140 # NCBI annotation: gp8 # Family: family:all:2792 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468474;genbank:gi:157325049;genbank:Ge neID:5601587 Length = 140 Score = 199 bits (506), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 88/140 (62%), Positives = 114/140 (81%) Query: 1 MASLANQTVQSANTVYFMIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGS 60 MAS+ NQTV + NTVY MIK + R QS S ERS+GT GVY+IGSIMPQEHVYL+YEGS Sbjct: 1 MASVTNQTVHTGNTVYLMIKGKIVGRCQSASGERSYGTTGVYEIGSIMPQEHVYLKYEGS 60 Query: 61 VTVERFRMKKENLASLGFAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSYNESVN 120 +TV+R RM+KE+LA LG ALGE++L+ D++DIV+ DN T+EV+IAYRGCS ++YNE + Sbjct: 61 LTVDRLRMRKEDLAKLGITALGEDILKRDVIDIVMMDNTTKEVIIAYRGCSAETYNEEIK 120 Query: 121 VGEISSETARFYFLTSANVR 140 EI SE+ARF +L++ANV+ Sbjct: 121 ANEIVSESARFLYLSAANVK 140 >gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024480;genbank:gi:48696439;genbank:GeneID :2948028 Length = 142 Score = 187 bits (474), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 83/138 (60%), Positives = 109/138 (78%) Query: 1 MASLANQTVQSANTVYFMIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGS 60 MAS A QTV + NTV MIK P+ RAQS S +R +GT GVY+IGSIMPQEHVYLRYEG+ Sbjct: 1 MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGT 60 Query: 61 VTVERFRMKKENLASLGFAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSYNESVN 120 +TVER RMKKEN A LG+A+LGEE+L+ DI+DI++ DNLT++V+I+Y GCS ++YNE+ Sbjct: 61 ITVERLRMKKENFADLGYASLGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQ 120 Query: 121 VGEISSETARFYFLTSAN 138 EI +E F +LT+++ Sbjct: 121 TNEIVTEEIEFSYLTASD 138 >gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: ORF105 # Family: family:all:2792 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240911;genbank:gi:66395051;genbank:GeneID :5132680 Length = 142 Score = 187 bits (474), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 83/138 (60%), Positives = 109/138 (78%) Query: 1 MASLANQTVQSANTVYFMIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGS 60 MAS A QTV + NTV MIK P+ RAQS S +R +GT GVY+IGSIMPQEHVYLRYEG+ Sbjct: 1 MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGT 60 Query: 61 VTVERFRMKKENLASLGFAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSYNESVN 120 +TVER RMKKEN A LG+A+LGEE+L+ DI+DI++ DNLT++V+I+Y GCS ++YNE+ Sbjct: 61 ITVERLRMKKENFADLGYASLGEEILKKDIIDILVVDNLTKQVIISYHGCSANNYNETWQ 120 Query: 121 VGEISSETARFYFLTSAN 138 EI +E F +LT+++ Sbjct: 121 TNEIVTEEIEFSYLTASD 138 >gi|21558|lcl|protein:vir:63764 Length: 123 # NCBI annotation: gp25 # Family: family:all:2792 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547630;genbank:GeneID:3783515 Length = 123 Score = 175 bits (444), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 77/123 (62%), Positives = 101/123 (82%) Query: 18 MIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGSVTVERFRMKKENLASLG 77 MIK + R QS S ERS+GT GVY+IGSIMPQEHVYL+YEGS+TV+R RM+KE+LA LG Sbjct: 1 MIKGKIVGRCQSASGERSYGTTGVYEIGSIMPQEHVYLKYEGSLTVDRLRMRKEDLAKLG 60 Query: 78 FAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSYNESVNVGEISSETARFYFLTSA 137 ALGE++L+ D++DIV+ DN T+EV+IAYRGCS ++YNE + EI SE+ARF +L++A Sbjct: 61 ITALGEDILKRDVIDIVMMDNTTKEVIIAYRGCSAETYNEEIKANEIVSESARFLYLSAA 120 Query: 138 NVR 140 NV+ Sbjct: 121 NVK 123 >gi|24314|lcl|protein:vir:100800 Length: 155 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164737;genbank:gi:56693150;genbank:GeneID :3197433 Length = 155 Score = 174 bits (441), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 72/142 (50%), Positives = 111/142 (78%) Query: 1 MASLANQTVQSANTVYFMIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGS 60 MA++ NQTV++ N +Y M+K+ + RAQS++ +RSFGT GVY++G+IMP+EHV+L+Y G+ Sbjct: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 Query: 61 VTVERFRMKKENLASLGFAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSYNESVN 120 V+VER+RM N + AALGE+VL++D++DI + DN T +++I YRGCSID Y E+ Sbjct: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQETYR 120 Query: 121 VGEISSETARFYFLTSANVRSA 142 EI+ E+ARFY+LT++N+++ Sbjct: 121 ANEITGESARFYYLTASNLQNG 142 >gi|23709|lcl|protein:vir:96672 Length: 121 # NCBI annotation: ORF106 # Family: family:all:2792 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238555;genbank:gi:66391358;genbank:GeneID :5130454 Length = 121 Score = 171 bits (434), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 76/115 (66%), Positives = 95/115 (82%) Query: 1 MASLANQTVQSANTVYFMIKNVPIARAQSISSERSFGTQGVYQIGSIMPQEHVYLRYEGS 60 MAS A QTV + NTV MIK P+ RAQS S RS+GT+GVY+IGSIMPQEHVYL+YEG Sbjct: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 Query: 61 VTVERFRMKKENLASLGFAALGEEVLQMDIMDIVLYDNLTQEVVIAYRGCSIDSY 115 +TVER RMKKEN A LG+A+LGEE+L+ DI+DIV+ DNLT+EV+++Y GCS ++Y Sbjct: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNY 115 >gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: putative major tail protein # Family: family:all:1028 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025036;genbank:gi:48697269;genbank:GeneI D:2948286 Length = 210 Score = 21.2 bits (43), Expect = 6.1, Method: Compositional matrix adjust. Identities = 7/15 (46%), Positives = 9/15 (60%) Query: 31 SSERSFGTQGVYQIG 45 + GT GVYQ+G Sbjct: 23 DATNGLGTDGVYQVG 37 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 20.8 bits (42), Expect = 7.0, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 14/27 (51%) Query: 17 FMIKNVPIARAQSISSERSFGTQGVYQ 43 + IKNV + + I + QG+YQ Sbjct: 378 YRIKNVILPTVKEIIVANALWEQGIYQ 404 >gi|5997|lcl|protein:vir:95545 Length: 195 # NCBI annotation: hypothetical protein # Family: family:all:10964 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293365;genbank:gi:148912786;genbank:Ge neID:5228197 Length = 195 Score = 20.4 bits (41), Expect = 9.3, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 12/25 (48%) Query: 41 VYQIGSIMPQEHVYLRYEGSVTVER 65 VY + P V+ Y G +TV R Sbjct: 165 VYDVDVTYPDGTVHRYYSGPITVSR 189 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.130 0.348 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,475 Number of Sequences: 514 Number of extensions: 1654 Number of successful extensions: 10 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of query: 142 length of database: 206,069 effective HSP length: 64 effective length of query: 78 effective length of database: 173,173 effective search space: 13507494 effective search space used: 13507494 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 33 (17.3 bits)